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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039160 ID=TCONS_00039160|Name=TCONS_00039160|organism=Clytia hemisphaerica|type=transcript|length=1917bp
AAAAACCCTGATGACAAAGATGACATCATTATCTCCGAACACAAACTTCA
AAAACTTGGCTACGTCGACTATGTCAAAAACCTCCCGAAGGAAATGCAAC
AGTCATTGGCGCAATCAAATCTACAAAATTACATCCCATGGCGCGCCGTT
TGGAAAGAATCATCAGTATCAACACCATGTCGGGTGGTATTCGATGCATC
CATGACCACCAACTCTGGATTTTCGCTCAATGACCTTCTCGCCAAGGGAA
GGAATAACAAGAACCGTCTTGTTGACATCTTCGTGCGGTGGAGGTGTCAC
TCCGTGGTTTTCCATACAGATGTTCAAAAAATGTACAATTCAATCAAACT
ACATCCAAGCCACTGGGGTCTTCAGCGTTACCTTTGGCAAGATCAGCTCG
ACTCTACAAAGCCACCAGAAGAAAAAGTGATCAAAACCCTCATATATGGA
ATTAAATCAAGTGGCAATCAAGCAGAAAGAGGATTGAGGGAAACTGCACG
ACTGTTCAAAGATGAGTATCCACAAATCCACCAAATAGTTTCAAATGATG
TGTATGTCGACGATTGCCTATCAGGAGCACCAACAATCAACTTGGCCCAC
AAACTGGCAGACGATCTTGAAGTTGTCATCAGTCATGGTGGTTTCAGTCT
AAAAGGGTTCACTTTCTCTGGACAAAGACCACAAGAATCACTATCAAATG
ATGGAGAAACAGTATCAGTGGCTGGACTTAGATGGTTCCCTCATGAAGAC
GAAATCTCACTTGATGTACAACAGCTCAACTTTGCCAAGAAGTCACGAGG
GCGAAAACCAACACTGCAATCTACAATCCCAAAGGATCTAACTCGACGTC
AATGTGTTGCCAAAGTTGCAGAGTTATATGACATCACCGGACTTATCACT
CCAATTGTAGCAACCATGAAGTTGGACCTCCACGATCTGGTCAAAAGAAA
GATGGATTGGGATGACGTCCTTCCAGATAACCTCAGAAGTCTCTGGATCA
ATCATTTCGAGATGATGGATGAAATCAAGAAAGTCAGATTCAAACGTGCA
ATCATCCCAGACGATGCAGCAAACTTGGACATCCAGACACTTGAATTTGG
TGATGCCAGCAAATATCTTGTCTGTATCGCTATTTATGTCAGATTCCAAA
GGAAAAATGGATTGCATTCGTGTCAACTCATATTTGGTCGTTCAAAACTG
ATTTCACAAGAGTACACCCAACCAAGGGCTGAATTGTTTGCTTCAATGAT
CAATGCTCATTCAGGACATACCATCAAACAAGCCCTCAAAGACAAGCACA
AGTCTTCCATAAAATTCACAGATTCACAGATCACATTATATTGGATTAGC
AATGACAACCTGAATCTCAAGCAATGGACAAGAAACAGAGTTTCAGAAAT
ACACCGATTCACAGATATCAATGAATGGAAATACTTAAAGTCAGAAGACA
TGATCGCAGACTTGGGCACAAGAAGATGTGAATCAATCAAAGAAATAGAT
CAAAATTCTCACTGGATCCAAGGATATCCATGGATGAATCAAGACGCATC
AACATTTCCAGACCAATCAGTTCAGGAAATCTCACTCAATGCTCAGGAGA
AACAACTCATGAAAAAGGAATCAAGGGATGATGATCGAAAAGAAGTTATC
AATTGCTTCATTTCCTCCACAAAACTAACACTTCCTGAGGCTATATCAGA
CAGGTACAAGTTATCATGCTACTTGTTGGATCCCAACTTCAAAAGATTTC
ACACGGTCATCAGAATCATGGGATATGTCATCAAATACATCAATGCTCTT
CGAAAGAAATTTACCATAACTTCTAAAATCAATCCTCTAAATCAATTACC
ATCTTTGACCGATGAGGATATCAGCAACTCCAGACAATACTTCTTCAAGA
AGGCAACACAAGAGGTG Run BLAST on NCBI protein sequence of TCONS_00039160-protein >TCONS_00039160-protein ID=TCONS_00039160-protein|Name=TCONS_00039160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=639bp
KNPDDKDDIIISEHKLQKLGYVDYVKNLPKEMQQSLAQSNLQNYIPWRAV
WKESSVSTPCRVVFDASMTTNSGFSLNDLLAKGRNNKNRLVDIFVRWRCH
SVVFHTDVQKMYNSIKLHPSHWGLQRYLWQDQLDSTKPPEEKVIKTLIYG
IKSSGNQAERGLRETARLFKDEYPQIHQIVSNDVYVDDCLSGAPTINLAH
KLADDLEVVISHGGFSLKGFTFSGQRPQESLSNDGETVSVAGLRWFPHED
EISLDVQQLNFAKKSRGRKPTLQSTIPKDLTRRQCVAKVAELYDITGLIT
PIVATMKLDLHDLVKRKMDWDDVLPDNLRSLWINHFEMMDEIKKVRFKRA
IIPDDAANLDIQTLEFGDASKYLVCIAIYVRFQRKNGLHSCQLIFGRSKL
ISQEYTQPRAELFASMINAHSGHTIKQALKDKHKSSIKFTDSQITLYWIS
NDNLNLKQWTRNRVSEIHRFTDINEWKYLKSEDMIADLGTRRCESIKEID
QNSHWIQGYPWMNQDASTFPDQSVQEISLNAQEKQLMKKESRDDDRKEVI
NCFISSTKLTLPEAISDRYKLSCYLLDPNFKRFHTVIRIMGYVIKYINAL
RKKFTITSKINPLNQLPSLTDEDISNSRQYFFKKATQEV Run BLAST on NCBI transcript from alignment at sc0002028:6188..8104 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039160 ID=TCONS_00039160|Name=TCONS_00039160|organism=Clytia hemisphaerica|type=transcript|length=1917bp|location=Sequence derived from alignment at sc0002028:6188..8104 (Clytia hemisphaerica)
CACCTCTTGTGTTGCCTTCTTGAAGAAGTATTGTCTGGAGTTGCTGATAT
CCTCATCGGTCAAAGATGGTAATTGATTTAGAGGATTGATTTTAGAAGTT
ATGGTAAATTTCTTTCGAAGAGCATTGATGTATTTGATGACATATCCCAT
GATTCTGATGACCGTGTGAAATCTTTTGAAGTTGGGATCCAACAAGTAGC
ATGATAACTTGTACCTGTCTGATATAGCCTCAGGAAGTGTTAGTTTTGTG
GAGGAAATGAAGCAATTGATAACTTCTTTTCGATCATCATCCCTTGATTC
CTTTTTCATGAGTTGTTTCTCCTGAGCATTGAGTGAGATTTCCTGAACTG
ATTGGTCTGGAAATGTTGATGCGTCTTGATTCATCCATGGATATCCTTGG
ATCCAGTGAGAATTTTGATCTATTTCTTTGATTGATTCACATCTTCTTGT
GCCCAAGTCTGCGATCATGTCTTCTGACTTTAAGTATTTCCATTCATTGA
TATCTGTGAATCGGTGTATTTCTGAAACTCTGTTTCTTGTCCATTGCTTG
AGATTCAGGTTGTCATTGCTAATCCAATATAATGTGATCTGTGAATCTGT
GAATTTTATGGAAGACTTGTGCTTGTCTTTGAGGGCTTGTTTGATGGTAT
GTCCTGAATGAGCATTGATCATTGAAGCAAACAATTCAGCCCTTGGTTGG
GTGTACTCTTGTGAAATCAGTTTTGAACGACCAAATATGAGTTGACACGA
ATGCAATCCATTTTTCCTTTGGAATCTGACATAAATAGCGATACAGACAA
GATATTTGCTGGCATCACCAAATTCAAGTGTCTGGATGTCCAAGTTTGCT
GCATCGTCTGGGATGATTGCACGTTTGAATCTGACTTTCTTGATTTCATC
CATCATCTCGAAATGATTGATCCAGAGACTTCTGAGGTTATCTGGAAGGA
CGTCATCCCAATCCATCTTTCTTTTGACCAGATCGTGGAGGTCCAACTTC
ATGGTTGCTACAATTGGAGTGATAAGTCCGGTGATGTCATATAACTCTGC
AACTTTGGCAACACATTGACGTCGAGTTAGATCCTTTGGGATTGTAGATT
GCAGTGTTGGTTTTCGCCCTCGTGACTTCTTGGCAAAGTTGAGCTGTTGT
ACATCAAGTGAGATTTCGTCTTCATGAGGGAACCATCTAAGTCCAGCCAC
TGATACTGTTTCTCCATCATTTGATAGTGATTCTTGTGGTCTTTGTCCAG
AGAAAGTGAACCCTTTTAGACTGAAACCACCATGACTGATGACAACTTCA
AGATCGTCTGCCAGTTTGTGGGCCAAGTTGATTGTTGGTGCTCCTGATAG
GCAATCGTCGACATACACATCATTTGAAACTATTTGGTGGATTTGTGGAT
ACTCATCTTTGAACAGTCGTGCAGTTTCCCTCAATCCTCTTTCTGCTTGA
TTGCCACTTGATTTAATTCCATATATGAGGGTTTTGATCACTTTTTCTTC
TGGTGGCTTTGTAGAGTCGAGCTGATCTTGCCAAAGGTAACGCTGAAGAC
CCCAGTGGCTTGGATGTAGTTTGATTGAATTGTACATTTTTTGAACATCT
GTATGGAAAACCACGGAGTGACACCTCCACCGCACGAAGATGTCAACAAG
ACGGTTCTTGTTATTCCTTCCCTTGGCGAGAAGGTCATTGAGCGAAAATC
CAGAGTTGGTGGTCATGGATGCATCGAATACCACCCGACATGGTGTTGAT
ACTGATGATTCTTTCCAAACGGCGCGCCATGGGATGTAATTTTGTAGATT
TGATTGCGCCAATGACTGTTGCATTTCCTTCGGGAGGTTTTTGACATAGT
CGACGTAGCCAAGTTTTTGAAGTTTGTGTTCGGAGATAATGATGTCATCT
TTGTCATCAGGGTTTTT Coding sequence (CDS) from alignment at sc0002028:6188..8104 >TCONS_00039160 ID=TCONS_00039160|Name=TCONS_00039160|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at sc0002028:6188..8104 (Clytia hemisphaerica)
CACCTCTTGTGTTGCCTTCTTGAAGAAGTATTGTCTGGAGTTGCTGATAT
CCTCATCGGTCAAAGATGGTAATTGATTTAGAGGATTGATTTTAGAAGTT
ATGGTAAATTTCTTTCGAAGAGCATTGATGTATTTGATGACATATCCCAT
GATTCTGATGACCGTGTGAAATCTTTTGAAGTTGGGATCCAACAAGTAGC
ATGATAACTTGTACCTGTCTGATATAGCCTCAGGAAGTGTTAGTTTTGTG
GAGGAAATGAAGCAATTGATAACTTCTTTTCGATCATCATCCCTTGATTC
CTTTTTCATGAGTTGTTTCTCCTGAGCATTGAGTGAGATTTCCTGAACTG
ATTGGTCTGGAAATGTTGATGCGTCTTGATTCATCCATGGATATCCTTGG
ATCCAGTGAGAATTTTGATCTATTTCTTTGATTGATTCACATCTTCTTGT
GCCCAAGTCTGCGATCATGTCTTCTGACTTTAAGTATTTCCATTCATTGA
TATCTGTGAATCGGTGTATTTCTGAAACTCTGTTTCTTGTCCATTGCTTG
AGATTCAGGTTGTCATTGCTAATCCAATATAATGTGATCTGTGAATCTGT
GAATTTTATGGAAGACTTGTGCTTGTCTTTGAGGGCTTGTTTGATGGTAT
GTCCTGAATGAGCATTGATCATTGAAGCAAACAATTCAGCCCTTGGTTGG
GTGTACTCTTGTGAAATCAGTTTTGAACGACCAAATATGAGTTGACACGA
ATGCAATCCATTTTTCCTTTGGAATCTGACATAAATAGCGATACAGACAA
GATATTTGCTGGCATCACCAAATTCAAGTGTCTGGATGTCCAAGTTTGCT
GCATCGTCTGGGATGATTGCACGTTTGAATCTGACTTTCTTGATTTCATC
CATCATCTCGAAATGATTGATCCAGAGACTTCTGAGGTTATCTGGAAGGA
CGTCATCCCAATCCATCTTTCTTTTGACCAGATCGTGGAGGTCCAACTTC
ATGGTTGCTACAATTGGAGTGATAAGTCCGGTGATGTCATATAACTCTGC
AACTTTGGCAACACATTGACGTCGAGTTAGATCCTTTGGGATTGTAGATT
GCAGTGTTGGTTTTCGCCCTCGTGACTTCTTGGCAAAGTTGAGCTGTTGT
ACATCAAGTGAGATTTCGTCTTCATGAGGGAACCATCTAAGTCCAGCCAC
TGATACTGTTTCTCCATCATTTGATAGTGATTCTTGTGGTCTTTGTCCAG
AGAAAGTGAACCCTTTTAGACTGAAACCACCATGACTGATGACAACTTCA
AGATCGTCTGCCAGTTTGTGGGCCAAGTTGATTGTTGGTGCTCCTGATAG
GCAATCGTCGACATACACATCATTTGAAACTATTTGGTGGATTTGTGGAT
ACTCATCTTTGAACAGTCGTGCAGTTTCCCTCAATCCTCTTTCTGCTTGA
TTGCCACTTGATTTAATTCCATATATGAGGGTTTTGATCACTTTTTCTTC
TGGTGGCTTTGTAGAGTCGAGCTGATCTTGCCAAAGGTAACGCTGAAGAC
CCCAGTGGCTTGGATGTAGTTTGATTGAATTGTACATTTTTTGAACATCT
GTATGGAAAACCACGGAGTGACACCTCCACCGCACGAAGATGTCAACAAG
ACGGTTCTTGTTATTCCTTCCCTTGGCGAGAAGGTCATTGAGCGAAAATC
CAGAGTTGGTGGTCATGGATGCATCGAATACCACCCGACATGGTGTTGAT
ACTGATGATTCTTTCCAAACGGCGCGCCATGGGATGTAATTTTGTAGATT
TGATTGCGCCAATGACTGTTGCATTTCCTTCGGGAGGTTTTTGACATAGT
CGACGTAGCCAAGTTTTTGAAGTTTGTGTTCGGAGATAATGATGTCATCT
TTGTCATCAGGGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039160-exon-sc0002028-1491911889:6188..8104 | TCONS_00039160-exon-sc0002028-1491911889:6188..8104 | Clytia hemisphaerica | exon |
| TCONS_00039160-exon-sc0002028-1510915933:6188..8104 | TCONS_00039160-exon-sc0002028-1510915933:6188..8104 | Clytia hemisphaerica | exon |
| TCONS_00039160-exon-sc0002028-1575043694:6188..8104 | TCONS_00039160-exon-sc0002028-1575043694:6188..8104 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002028 | supercontig | sc0002028:6188..8104 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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