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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039153 ID=TCONS_00039153|Name=TCONS_00039153|organism=Clytia hemisphaerica|type=transcript|length=5071bp
CATCTTTAGAAATTGGTCCCATGTGTAGTGCTATCGGGTTGACTTCTGCT
CAAATTGATGGGAATGATAAGGATTGCCTAAAAAATGCCATCGCTGAAAT
TACGAAAGATGACAAGTCAGTTGTTGTCACAAATGGGATTGTTTTAGAGT
TGAAGTCCTACTTTATGGATCATTTCACTCCAAGTTGGAGCAAATTTCAT
GAATGTATGATTCCCTTATTTCCTGAGTGTGTCCATCATTTTGAgagatt
caaaaaaattctaacaaAGTTAagtgaagataaaaaaagtttgcGTGCTA
ACAATTTAAGCACCTTTTCAAACCAGCCATTTTCTTTTCCTGTTCCCTCA
GGTATAAACCGAACTGTTTCAAATGATAGTCCCGTGAGCAGCAAAAATCT
TGGTAAAACCAGAAATGAAACTTTCAATCGTGaagaatttgataaaacaa
tatcattattattagaaaaaaataatgatctgGAATCCAAAGTTTTTCTA
CTTTTTGAGGCCTTAAAGGAAGAGAGTAAAGACAAGATTAAGTATTTGAA
TGAACTTAAATGCCTTCAGATAGAAAGTGAGAAAACTTCCTCTGATTTAA
GTAAAGCATTATCAAAGTTGGGACACTTGTCGACACGTAATGTCAACAAA
CGTATCAAACTTCAGAAGGATAAAGTGATCGAGGCAAATGAGGAGttgtg
tgaaaaaaatgaaatgataaGTTCCCTTCAGTCTTCTATTGCAGAAAGCa
cttctgaaaatgaaaaatacatacaaaaattGAATGCCAAACTAGATAAA
GCCCTAGTCAAATCTACCAAATATAGGCGAAGGAAcaatgatttgaaaaa
aaaagtactgaacttcgaaaaaaaacttggTGAAACCAATGAAAATGGCT
TTCAATCTCATACTGAAAATCTCAAagctgaaatcaaaattttgatagat
catgtaaaatttttagaaaatgaaaaacttgcTGCCGAGGAAGAGCTAGA
AGATTTGATGAAAAGTaatgaaataaaagtttttcataaAGGGTGTTACA
ATGCTGACATCCGCGCTGTTTATGAAGACCTCCTATGCATGGGTGTGGGT
ACATCCAAAGTAAAGGAGGTTATTAGAACAGTACTTAAAAATATTGCCAA
GCGAGATGCTCCTGTTCTACCGGGGGTGACTTTTGCTAAGGGAATGCTTC
TTGAGGCCAGGAATCTTGCACAACAACATTTAGTTTATGTTTTATCTGGG
GAAAAGATTTCTGAAAGTGATTCTGCAACAAACTTTTCTGATCTAAATAC
CCTGCATAGTGAtggaacttcaaaaaaaggtcgTTCATACTTATCATACG
ACATTACAACTAAAACTGGTGAAACTCTCAATGCTGGCCTGAGAGAGACA
AGCTCAGGGGATGCTGAAATGCAATTAAAAGTCTTACAAAATATCCTTGA
TGATTTATCTAAAAAGTCCTCTGACAAATCTTTCAGCAACAAAGTCTTTG
GTTCAATAAAAAATCTCATGAGTGACCGCTGCAgcactcaaaaaaaattt
aatcacaTCTTTATAGAATATAGAGCCTCTGTTTTACCACAAATTATAGA
GGGATGGGATAACCTAACAGATAAAGAAAAGTCAAAGTTGAAGAATATAA
ATGAATTCTTTTGCGGACTTCATTATCTTGTCGGACTAGCAGATCAAGCT
GAAGCCACTTTGAAAGTTTGGGAGGGTTTACTTTATTATAAAGATAAAAA
AGTAGGGTCCCTTGCTCATGGTGGCTATTCTAACGGGGAGTCAGGGTGTC
TCCGCACTATTAGAACAGTGTGCAAATCAGTACAGGAAAGGGGTTGTGAT
AAAAGTGGACGTATGGTCCACTTTGCCACCTTTTTAAAAAGTGAGTACAA
CATTACTGAAATTCCACTGTACCCATTTTTAGGCAATAGgtttaatattt
tgtttttgaatgcaGCTGGAGTATTCCAGCTGTATTCGCTACTTCAAGCC
TTTTTTTCTGAATGTTACGATGAGAATAGGCTTTTGACAGCTGTCTATCA
TGATTTAAATGTTTTGGCTTATAAGGTGGGTTGTAGAGCTTTAGGCCTGA
TACATAAAAAGGTGACAGGTCCTTTTTGGCGACAGATGGTTGAATCGGAA
ACTGCCCTGAATATgtcaaagaattatcaaaaaatggttgaaaaatttga
aaagtggaGTGCTGATTCCTCTGATTTCTTATTTGGCTCAGATTGTCTCT
TTCCTAAACACATTCACAAGGAtacaatttttgaaacattGACTTCTCAA
TTTGAACATGATGAATCCATGACTAAACCTTTACTTGAAATGATATTTGC
CAGTTTCACTGTGGTCTCAAAAAGAATGTTAGAAGATCATTTAGTTGGAG
GCAAATACGATAATCCTTCAGAGGAAACTTCCCAAGAAGCAGTGGCTGTG
CCAACATCAAATGCTCTAAACGAGCGTACGTTTGGTATGCTCGATTACCT
TAAACGTGCTAAACCAAAAGCACTAGACATGGTGTATGAAGGAATCATCA
TGTTCAATTTGAATAAAACAAAAGCCTGGAGGGATAATCTATCAAAGTCT
GATCTTATGATGGTAATGGAGAGAGCTAGAACAAGtgtaaaagaacaaaa
aaagcttttttttcaaagaaagcaACAGATTcacaatgaaaaagaagaaa
aaactaaacaagcagcacttgaaaaaaaaagaaaagcagaAAACCTAGCA
TCATTTAAGGAACAATTGACAGTGCAAATTCAAGAGAAGTGCAATGGGCT
GTGGACTGACAAAGAAACTATTGAAAAGGAACTAGGCAAACTTGATACTG
CTAAAAGCAAAAGAGAATCATTAAAGGTCCAATTGGACTTTCGCAAAACT
GTCCTCCAAATGAATACAATATGTCATAAATCTCTTTTCTTTCTTACATC
GCAAGGAAAAAACAAGAGTATTGAGGAACTTAAAAATAATCTGTTGAAAA
TTATAGAAGAAAAGGAAATGGAAACTAATGAGGAACCAAAAACTGATAAT
TTTGACTTTTCTGAGCCTGTAACTTTGTCAACTGAAATagtgaaacaaag
aaaagaagaaatacTTACTAAtgggaagaaagaaaaaaaacagggAAAAC
AAAAGGTGGGTGTcaaaattcaaaccaaaaataaaaagagaGTGGCGACA
AATTCGAAAAAGAACATCTCTAAGAAGCAAAGAGTTTCAAAAAATTCTGA
GTCACAGTCACCGATAATTTCTATTCCCTCTGATTTAATTGGAAAACTTG
TTTGTCATTATACTGAAAGAGATGAGGAAGTTGGATGGCACAGGGGCGTA
GTCATTCGGCAGGTAGGGCGGGCAGTAAAAAACCCAAAATTTCTCATTCA
ATATCATCTTTGTGACTCAGAAGGAAATGATACATGTACTGCTAACCTCT
ATGAAGATTTTTTAAGTGATGACTTGACTCTAATAAATATTGTTTCATCA
GATTTTATCGATTCCAAAATAGAAGTCCTCTATGAGGAAGACAACATTGA
TAAATGGTGGGAAGGTGAGGTTGCAGATGTCGATCAGGAAAGTAAAGACC
CTGAAAACCCTGATTTCTTTGTTTATTACGAGTTTAATGATGGGAGTGAA
GATGATATCACAGAGAAAGAATATTTTCTTGAGCCTTTGATAGAACTGTA
TTTGAATGGGCGTGTAAGGTTTCTAGAATGCGTAGTGGgattggaaaaat
aaatttatatgtAAGTAATGAGGTTTACTATAATTTTTTAGTTACAAACA
ACAATTCATATTCTCAACTTTTTCCTCACTGaccaaaatatgaaataaat
acacataattttaagaacattatcaTGCCATAATAAATTCTTTCAATATA
TCACTAGTGatgtgtgaaaaaaaaacatgttgaaCAGGctatttaaaaat
ttgaaagccAAAAATATCAACTTGAAATTTCACCTTCCAAGTGAGTTTAA
CTGAAAGATTGATAAGGTATTAAATAGTACTCGTGTTAAATATTGTGTAT
TGAAACAGCAGGTCTGGAATAAAAAGTTGAATctgaaatgttttgaattt
tatagtCTGAGAACAACCTCTTTATTCATAAATACTTTTTCCAATATCAT
TAATCTGAGCTCATGATTTTATGTGCATGAAAGGACCACCAGTGTTTGTT
GGTGTGGTGGACTCAAGGTTGCGTGGAGGGGCAACTCTTGCACAAGTCTA
GTCGTGTCagtaaaaagataaaatacTAGACTCTAGACTGTCATATCTTA
TGtcttttcaaattaatttccAGTCTACCTAAAACTGAGTCAAGTCATTT
ATTTAAATTATTGCTCCTTTTTTTTTAGAAGATAAATAAGTAATAAAATG
CCAGCTAATGGAAAAGGTCCTCCTTATCAGGATGGTGAGTTGCTGGATAT
GCTAATGAATCGACAACACCCACTACAACACCCACAACTGCATTCACCAG
CATCACCAGCATCTGATGCTTCCACAATTCCATATTATGTAAAGTATTCG
TTAGTTACTACTTAAATCGTATTAAACTTTGTGAGATTAAACTTCGCatg
attaaatttcgcaaggtcaaaaatttgcgaaattttttggatttgatttt
GCAAATGAGCAGttcgaaaaatttcgcgtggatttaatttcacaAATGAG
CAACTGCCAAACCATTTGGCGAGTTTCAATTACGCAAAAAGGGTGAAAAT
TCACGTAAACGCAAAATTTTATCTTGCCAAGTTTAATACGATTTAAAGTA
ATTTAAGAGTAATGTTTAAGATTAAGTATTTGTTTCAGTGAAAGTTACTG
TCCCTAATAACGCAGCAGtttttcgaaaagaaattgaaaatcacTTAACT
ATTTAGGgtaatgaagatgaagaaggtgtTACTGCAGAATACGTTCCCTA
CGAGCCAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATGATC
AGCCAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATGATCAG
CCAGAACCAGTAGTTGATGAT Run BLAST on NCBI transcript from alignment at sc0002027:4675..9745- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039153 ID=TCONS_00039153|Name=TCONS_00039153|organism=Clytia hemisphaerica|type=transcript|length=5071bp|location=Sequence derived from alignment at sc0002027:4675..9745- (Clytia hemisphaerica)
CATCTTTAGAAATTGGTCCCATGTGTAGTGCTATCGGGTTGACTTCTGCT
CAAATTGATGGGAATGATAAGGATTGCCTAAAAAATGCCATCGCTGAAAT
TACGAAAGATGACAAGTCAGTTGTTGTCACAAATGGGATTGTTTTAGAGT
TGAAGTCCTACTTTATGGATCATTTCACTCCAAGTTGGAGCAAATTTCAT
GAATGTATGATTCCCTTATTTCCTGAGTGTGTCCATCATTTTGAGAGATT
CAAAAAAATTCTAACAAAGTTAAGTGAAGATAAAAAAAGTTTGCGTGCTA
ACAATTTAAGCACCTTTTCAAACCAGCCATTTTCTTTTCCTGTTCCCTCA
GGTATAAACCGAACTGTTTCAAATGATAGTCCCGTGAGCAGCAAAAATCT
TGGTAAAACCAGAAATGAAACTTTCAATCGTGAAGAATTTGATAAAACAA
TATCATTATTATTAGAAAAAAATAATGATCTGGAATCCAAAGTTTTTCTA
CTTTTTGAGGCCTTAAAGGAAGAGAGTAAAGACAAGATTAAGTATTTGAA
TGAACTTAAATGCCTTCAGATAGAAAGTGAGAAAACTTCCTCTGATTTAA
GTAAAGCATTATCAAAGTTGGGACACTTGTCGACACGTAATGTCAACAAA
CGTATCAAACTTCAGAAGGATAAAGTGATCGAGGCAAATGAGGAGTTGTG
TGAAAAAAATGAAATGATAAGTTCCCTTCAGTCTTCTATTGCAGAAAGCA
CTTCTGAAAATGAAAAATACATACAAAAATTGAATGCCAAACTAGATAAA
GCCCTAGTCAAATCTACCAAATATAGGCGAAGGAACAATGATTTGAAAAA
AAAAGTACTGAACTTCGAAAAAAAACTTGGTGAAACCAATGAAAATGGCT
TTCAATCTCATACTGAAAATCTCAAAGCTGAAATCAAAATTTTGATAGAT
CATGTAAAATTTTTAGAAAATGAAAAACTTGCTGCCGAGGAAGAGCTAGA
AGATTTGATGAAAAGTAATGAAATAAAAGTTTTTCATAAAGGGTGTTACA
ATGCTGACATCCGCGCTGTTTATGAAGACCTCCTATGCATGGGTGTGGGT
ACATCCAAAGTAAAGGAGGTTATTAGAACAGTACTTAAAAATATTGCCAA
GCGAGATGCTCCTGTTCTACCGGGGGTGACTTTTGCTAAGGGAATGCTTC
TTGAGGCCAGGAATCTTGCACAACAACATTTAGTTTATGTTTTATCTGGG
GAAAAGATTTCTGAAAGTGATTCTGCAACAAACTTTTCTGATCTAAATAC
CCTGCATAGTGATGGAACTTCAAAAAAAGGTCGTTCATACTTATCATACG
ACATTACAACTAAAACTGGTGAAACTCTCAATGCTGGCCTGAGAGAGACA
AGCTCAGGGGATGCTGAAATGCAATTAAAAGTCTTACAAAATATCCTTGA
TGATTTATCTAAAAAGTCCTCTGACAAATCTTTCAGCAACAAAGTCTTTG
GTTCAATAAAAAATCTCATGAGTGACCGCTGCAGCACTCAAAAAAAATTT
AATCACATCTTTATAGAATATAGAGCCTCTGTTTTACCACAAATTATAGA
GGGATGGGATAACCTAACAGATAAAGAAAAGTCAAAGTTGAAGAATATAA
ATGAATTCTTTTGCGGACTTCATTATCTTGTCGGACTAGCAGATCAAGCT
GAAGCCACTTTGAAAGTTTGGGAGGGTTTACTTTATTATAAAGATAAAAA
AGTAGGGTCCCTTGCTCATGGTGGCTATTCTAACGGGGAGTCAGGGTGTC
TCCGCACTATTAGAACAGTGTGCAAATCAGTACAGGAAAGGGGTTGTGAT
AAAAGTGGACGTATGGTCCACTTTGCCACCTTTTTAAAAAGTGAGTACAA
CATTACTGAAATTCCACTGTACCCATTTTTAGGCAATAGGTTTAATATTT
TGTTTTTGAATGCAGCTGGAGTATTCCAGCTGTATTCGCTACTTCAAGCC
TTTTTTTCTGAATGTTACGATGAGAATAGGCTTTTGACAGCTGTCTATCA
TGATTTAAATGTTTTGGCTTATAAGGTGGGTTGTAGAGCTTTAGGCCTGA
TACATAAAAAGGTGACAGGTCCTTTTTGGCGACAGATGGTTGAATCGGAA
ACTGCCCTGAATATGTCAAAGAATTATCAAAAAATGGTTGAAAAATTTGA
AAAGTGGAGTGCTGATTCCTCTGATTTCTTATTTGGCTCAGATTGTCTCT
TTCCTAAACACATTCACAAGGATACAATTTTTGAAACATTGACTTCTCAA
TTTGAACATGATGAATCCATGACTAAACCTTTACTTGAAATGATATTTGC
CAGTTTCACTGTGGTCTCAAAAAGAATGTTAGAAGATCATTTAGTTGGAG
GCAAATACGATAATCCTTCAGAGGAAACTTCCCAAGAAGCAGTGGCTGTG
CCAACATCAAATGCTCTAAACGAGCGTACGTTTGGTATGCTCGATTACCT
TAAACGTGCTAAACCAAAAGCACTAGACATGGTGTATGAAGGAATCATCA
TGTTCAATTTGAATAAAACAAAAGCCTGGAGGGATAATCTATCAAAGTCT
GATCTTATGATGGTAATGGAGAGAGCTAGAACAAGTGTAAAAGAACAAAA
AAAGCTTTTTTTTCAAAGAAAGCAACAGATTCACAATGAAAAAGAAGAAA
AAACTAAACAAGCAGCACTTGAAAAAAAAAGAAAAGCAGAAAACCTAGCA
TCATTTAAGGAACAATTGACAGTGCAAATTCAAGAGAAGTGCAATGGGCT
GTGGACTGACAAAGAAACTATTGAAAAGGAACTAGGCAAACTTGATACTG
CTAAAAGCAAAAGAGAATCATTAAAGGTCCAATTGGACTTTCGCAAAACT
GTCCTCCAAATGAATACAATATGTCATAAATCTCTTTTCTTTCTTACATC
GCAAGGAAAAAACAAGAGTATTGAGGAACTTAAAAATAATCTGTTGAAAA
TTATAGAAGAAAAGGAAATGGAAACTAATGAGGAACCAAAAACTGATAAT
TTTGACTTTTCTGAGCCTGTAACTTTGTCAACTGAAATAGTGAAACAAAG
AAAAGAAGAAATACTTACTAATGGGAAGAAAGAAAAAAAACAGGGAAAAC
AAAAGGTGGGTGTCAAAATTCAAACCAAAAATAAAAAGAGAGTGGCGACA
AATTCGAAAAAGAACATCTCTAAGAAGCAAAGAGTTTCAAAAAATTCTGA
GTCACAGTCACCGATAATTTCTATTCCCTCTGATTTAATTGGAAAACTTG
TTTGTCATTATACTGAAAGAGATGAGGAAGTTGGATGGCACAGGGGCGTA
GTCATTCGGCAGGTAGGGCGGGCAGTAAAAAACCCAAAATTTCTCATTCA
ATATCATCTTTGTGACTCAGAAGGAAATGATACATGTACTGCTAACCTCT
ATGAAGATTTTTTAAGTGATGACTTGACTCTAATAAATATTGTTTCATCA
GATTTTATCGATTCCAAAATAGAAGTCCTCTATGAGGAAGACAACATTGA
TAAATGGTGGGAAGGTGAGGTTGCAGATGTCGATCAGGAAAGTAAAGACC
CTGAAAACCCTGATTTCTTTGTTTATTACGAGTTTAATGATGGGAGTGAA
GATGATATCACAGAGAAAGAATATTTTCTTGAGCCTTTGATAGAACTGTA
TTTGAATGGGCGTGTAAGGTTTCTAGAATGCGTAGTGGGATTGGAAAAAT
AAATTTATATGTAAGTAATGAGGTTTACTATAATTTTTTAGTTACAAACA
ACAATTCATATTCTCAACTTTTTCCTCACTGACCAAAATATGAAATAAAT
ACACATAATTTTAAGAACATTATCATGCCATAATAAATTCTTTCAATATA
TCACTAGTGATGTGTGAAAAAAAAACATGTTGAACAGGCTATTTAAAAAT
TTGAAAGCCAAAAATATCAACTTGAAATTTCACCTTCCAAGTGAGTTTAA
CTGAAAGATTGATAAGGTATTAAATAGTACTCGTGTTAAATATTGTGTAT
TGAAACAGCAGGTCTGGAATAAAAAGTTGAATCTGAAATGTTTTGAATTT
TATAGTCTGAGAACAACCTCTTTATTCATAAATACTTTTTCCAATATCAT
TAATCTGAGCTCATGATTTTATGTGCATGAAAGGACCACCAGTGTTTGTT
GGTGTGGTGGACTCAAGGTTGCGTGGAGGGGCAACTCTTGCACAAGTCTA
GTCGTGTCAGTAAAAAGATAAAATACTAGACTCTAGACTGTCATATCTTA
TGTCTTTTCAAATTAATTTCCAGTCTACCTAAAACTGAGTCAAGTCATTT
ATTTAAATTATTGCTCCTTTTTTTTTAGAAGATAAATAAGTAATAAAATG
CCAGCTAATGGAAAAGGTCCTCCTTATCAGGATGGTGAGTTGCTGGATAT
GCTAATGAATCGACAACACCCACTACAACACCCACAACTGCATTCACCAG
CATCACCAGCATCTGATGCTTCCACAATTCCATATTATGTAAAGTATTCG
TTAGTTACTACTTAAATCGTATTAAACTTTGTGAGATTAAACTTCGCATG
ATTAAATTTCGCAAGGTCAAAAATTTGCGAAATTTTTTGGATTTGATTTT
GCAAATGAGCAGTTCGAAAAATTTCGCGTGGATTTAATTTCACAAATGAG
CAACTGCCAAACCATTTGGCGAGTTTCAATTACGCAAAAAGGGTGAAAAT
TCACGTAAACGCAAAATTTTATCTTGCCAAGTTTAATACGATTTAAAGTA
ATTTAAGAGTAATGTTTAAGATTAAGTATTTGTTTCAGTGAAAGTTACTG
TCCCTAATAACGCAGCAGTTTTTCGAAAAGAAATTGAAAATCACTTAACT
ATTTAGGGTAATGAAGATGAAGAAGGTGTTACTGCAGAATACGTTCCCTA
CGAGCCAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATGATC
AGCCAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATGATCAG
CCAGAACCAGTAGTTGATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039153-exon-sc0002027-1575043694:4675..9745 | TCONS_00039153-exon-sc0002027-1575043694:4675..9745 | Clytia hemisphaerica | exon |
| TCONS_00039153-exon-sc0002027-1510915933:4675..9745 | TCONS_00039153-exon-sc0002027-1510915933:4675..9745 | Clytia hemisphaerica | exon |
| TCONS_00039153-exon-sc0002027-1491911889:4675..9745 | TCONS_00039153-exon-sc0002027-1491911889:4675..9745 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002027 | supercontig | sc0002027:4675..9745 - |
Blast
The following BLAST results are available for this feature:
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