TCONS_00039152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039152
Unique NameTCONS_00039152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039152 ID=TCONS_00039152|Name=TCONS_00039152|organism=Clytia hemisphaerica|type=transcript|length=1215bp
attttgctattttccagCGGGTATCCTCACATTTCCAAGAATTTATTCTT
GACTTTAAAAGGTTCGTCCAGGTACGCCCCGAAAGCTTCGTATAGTAGTC
GACTAAGCACGACGAACAAGACGGCGGCGGTTGAACACACGCGCATGGAG
CAGATGCCAAGCACGACGCCAAGAGGACAGGGCGAAGTCATCAAGTTCGG
AAAAATCAATAAGATTAATGAGGATGGTCGAAAAGAACCAGATCTTaaca
aatttaaagatttttcacaCTCCTTCAAActtgaatcaaaaacaaaaaag
actgAAGTGAAGACAGACACGACCGCTTCCACAACACATGTGGCTGTTGC
AACCCCATCTTCCACGACCAAAGACAGTAAGGCGGTCGTCGAAGAAACAA
TCATGAAATCTGTTGCAAATGTTGCTTTATCTGCACCAGTTCCTGAAACT
GTTCTTTTATCTAAACCCAACACCAAAGACGTCTCCGCAAGACCTTCCAT
CACAACCACGATTTCTACAACAACTACTACAACCTCTGCAACACGAGTCG
CGACATCTGCAACCGACACTAAGAACGTCTCAACAACAACCCCGACAGTT
TCAACGACAACTACGACATCTGTCGTCTCTAGTGTTGTCAGTACCGTCAC
AGCCTCCTCTACGACACCTTCCAAGTAAGTAAAACTAATCAGAGAGGAGT
ATATTTGATTCTAGAATACTAGAATAAGAGTAATTTATTAACTCTTTCGG
AGGCAATTTTTCGAGGGGGGGGGGCGAATTTCTTAGAATCaatgatattt
ttaaagatatatttctatttcttctttctttttggccatgtccgtccgtc
cgtccgttcgttcgttcgttcgtctgttgccagcttttttcaggattggc
tcattagttttttttgatttttggcataaagatgcaaaatggcaatgccc
aaaatgtgacggagcccgattttcgaaaaaaaacatttccggcggtaaat
accggaaatatgccggaaaaactgtttttttggcattttcacgagatttt
atcattagttttttctgattttttgctcaaagatgcgtattaacaatgcc
caaaacatggccgagtccaatttttgagaaagaattttttcggtcgaaaa
tgccggaaatatgccggaaatcgccgtttttctggattttcattggattt
ttttcttataattgg
Run BLAST on NCBI

protein sequence of TCONS_00039152-protein

>TCONS_00039152-protein ID=TCONS_00039152-protein|Name=TCONS_00039152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
ILLFSSGYPHISKNLFLTLKGSSRYAPKASYSSRLSTTNKTAAVEHTRME
QMPSTTPRGQGEVIKFGKINKINEDGRKEPDLNKFKDFSHSFKLESKTKK
TEVKTDTTASTTHVAVATPSSTTKDSKAVVEETIMKSVANVALSAPVPET
VLLSKPNTKDVSARPSITTTISTTTTTTSATRVATSATDTKNVSTTTPTV
STTTTTSVVSSVVSTVTASSTTPSK
Run BLAST on NCBI

transcript from alignment at sc0002026:9..5064-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039152 ID=TCONS_00039152|Name=TCONS_00039152|organism=Clytia hemisphaerica|type=transcript|length=5056bp|location=Sequence derived from alignment at sc0002026:9..5064- (Clytia hemisphaerica)
ATTTTGCTATTTTCCAGCGGGTATCCTCACATTTCCAAGAATTTATTCTT GACTTTAAAAGGTTCGTCCAGGTACGCCCCGAAAGCTTCGTATAGTAGTC GACTAAGCACGACGAACAAGACGGCGGCGGTTGAACACACGCGCATGGAG CAGATGCCAAGCACGACGCCAAGAGGACAGGGCGAAGTCATCAAGTTCGG AAAAATCAATAAGATTAATGAGGATGGTATGGCTTTTTTTTGTCCGTAAC TTTTTAACAACTCTTTTTGTGAATCAGAGCAGGTCCGATGCAGTACTATT ACAGGTTTAGCGTAAAGTTTTCCCAGAAATAAACGGATTTATGCCAAGAA AGGATTTCAAAAGGGAAAGAATTCTCGTAAAAAACGCTAATTTCATACCT TCGCACCTCGAAGATAAGTTTTGTCAGAGTACTGTGTTAACAAGGATCGC AAGATTGACAGTTTAAAATGGTGCCAGATCATTTTTGTCCATAATCGAAG ATATAGTCGATATTTTACAGCAATATATGAACTCTAACGCGGCGTTGGAA GTGGTATAGGTTCGTGGGGTTGGCGCTTTTAGACGTCTCAGCCATCGTTC CAGCCATTGGGCCATTCCATTTTATCTCCATACAGGAGGGGGGGGGGGAC AAACATTTCCAGGGGGTAACCTGAGAAGAATTTCCAGGGGGGGTCTAAAG GAGTGTTTTTTTTTCCAGGGGGTAAATATAGTTATTCTAAAATTTGGACA AGACAAGTTTTATTTCGTCCACTGTCACTTTAAAGTATAAAATAAAACTT TTCCGAGGGTTATTTTGCAAATTTTGCTATTTTCCAGCGGGTATCCTCAC ATTTCCAAGAATTTATTCTTGACTTTAAAAGGTTCGTCCAGGTACGCCCC GAAAGCTTCGTATAGTAGTCGACTAAGCACGACGAACAAGACGGCGGCGG TTGAACACACGCGCATGGAGCAGATGCCAAGCACGACGCCAAGAGGACAG GGCGAAGTCATCAAGTTCGGAAAAATCAATAAGATTAATGAGGATGGTAT GGCTTTTTTTTGTCCGTAACTTTTTAACAACTCTTTTTGTGAATCAGAGC AGGTCCGATGCAGTACTATTACAGGTTTAGCGTAAAGTTTTCCCAGAAAT AAACGGATTTATGCCAAGAAAGGATTTCAAAAGAGAAAGAATTCTCGTAA AAAACGCTAATTTCATACCTTCGCACCTCGAAGATAAGTTTTGTCAGAGT ACTGTGTTAACAAGGATCGCAAGATTAACAGTTTAAAATGGTGCCAGATC ATTTTTGTCCATAATCGAAGATATAGTCGATATTTTACAGCAATATATGA ACTCTAACGCGGCGTTGGAAGTGGTATAGGTTCGTGGGGTTGGCGCTTTT AGACGTCTCAGCCATCGTTCCAGCCATTGGGCCATTCCATTTTATCTCCA TACAGGAGGGGGGGGTGGACAAACATTTCCAGGGGGTAACCTGAGAAGAA TTTCCAGGGGGGGTCTAAAGGAGTGTTTTTTTTTCCAGGGGGTAAATATA GTTATTCTAAAATTTGGACAAGACAAGTTTTATTTCGTCCACTGTCACTT TAAAGTATAAAATAAAACTTTTCCGAGGGTTATTTTGCAAATTTTGCTAT TTTCCAGCGGGTATCCTCACATTTCCAAGAATTTATTCTTGACTTTAAAA GGTTCGTCCCCCCCCCCCCCCTACCCTGTATCAATTTTTAAATGGAACAG CCCATTGGTGTCGTTGATTTTTTCTGAAGATGATCCTTCTTTTCTTTACT TGCAGGTCGAAAAGAACCAGATCTTAACAAATTTAAAGATTTTTCACACT CCTTCAAAGTAAGTAATGCATGAATGCTTCTGCACGCTTTTTTTTTATAA GAATATGTTTTATAAGAATATCAGGGTGCTAAATTTACCAAATCGTAAGA ATACCCTGAGAATACCCTCTAGGGTGAATTTCACAGAATTTGATAAGAAT ACAATCATTTTGTATTTGGTTGACAGAAAAAGCTGCTTCCTTTGTTAGAC TTGAATTTGAACTTTGAGGCAGAAATGTAATTTTAGCTCCAAATGTTCAT TCAAAAGCCCCAAAACTCTCAAATTGATCATTTCTCATGTTTGTAAAAAG TCAAGTCTAAAAAAGTAAGAATACGTTAAGAATACTTGACCCTCATTCAA ATTACACAATTCTTATTAAAAGAAAGCGCGCATTTTACCGATGGTTTGTT TGTATGTCAAAATTTGGAGATTTATTTGGGAACAGTTGAGTAGAGTGTCC ACTTTTTATGTTCTTTTTGCCATATTGCAAATAAAACATTGGTTTTTAAT TACAGGCATATGTCTAGATTTATTTTTTTGCGATAAACAAATTTGCGATG AACTGAAACCCAGCCTTAGGTTAAGCGAGTAGTGATTTCCCTAGACTATA GTCTATTTCTGACTGAACTGTGGTGCTTTTTGATGACTCTGATAGCGCTG AGTCCAGTGAAGTAGACTAGAGGACTTCGCCATCTTGATTTTGTTCACTT TCGTTTTCAAAAATTATATGAAAACATCAAAGCAATAAAATTTTTTCTGA AAATCCATTACAGTTTATGAAATTATAATAAAAACAAGAAAATACCTCCA AAATTTGAAAAAAATTGGTCTATCGGTCATGGTTTTCTGTTTGTTTTTCT TCAAAAAGGGACTGTATCTAGTGGTACGGATTTGCTACCACCTCAAGCAA AGCCAAAAATTGGAGCCTGCCAAATTACATCGGGCCACTTATCAGCGCCA TCCAGTCTATCAAAAAGCTTTAATTGACCCCCGGGTTATGATTTCCCAGC CTTTCTTCAAAAAAAGTAAATAAAGTTGGAAAACTTTCGTTCATGCCAAG GAGATCTGGAGGTATCTACGACAGTTAGTCAGAAAATTGACTTGTCAAAG CTTGGATCAAGTCGGTTCCAACAAGTTACCATAAAAGCTACCCTCAGAAA AACACACAGTTTCTATTGCATCTTTAGCTACCACCCACCCCTTCATTAGT CTGAATATTATTAAAAAGAGAGTTTTTAGAAGCTCCCAAAACTATACGAC AAAAATTCAAAATAAATTTCGAATATTCTAATACTTCGACATACCTTATN ACAAAAATTCAAAATAAATTTCGAATATTCTAATACTTCGACATACCTTA TCGCCCCTGTTTACGCTGGCCCTTATTGGTGTTATTTTCTCGTCGCTGGA GAAATAAGGGCCGGCGTAAGGGGCTGGATTTAAATTAAAGACGACCTAAA AAGGACAGAAATTGAGTTTTGATGTAATAAGGGCCGGCGTTGAAGGGGTC GGCGTTAAATTAGGACTGGCGTAAAAAGGACTGGCGTAAAAAGATGTCGA TAAGGTAGCTGCTTTCAACCAGTAAAATCCAGGTCTTCGGTATCGGGGGA ATTGATATCTCACAAAATTTTCTTATAATTTTAGCTTGAATCAAAAACAA AAAAGACTGAAGTGAAGACAGACACGACCGCTTCCACAACACATGTGGCT GTTGCAACCCCATCTTCCACGACCAAAGACAGTAAGGCGGTCGTCGAAGA AACAATCATGAAATCTGTTGCAAATGTTGCTTTATCTGCACCAGGTATAT AGTACCTATATAGTATAGGCGCAATTACCCCTCTCTTCTGTAAATCTACA ACGGTCTACCCAGAATTTCTAATGTTTTAACAAGTAGGATGCTTGTTTTT GCAGGACATTGTTTTCATTCAAAACATGAAGTAATCTCAGATCTTTTACT TTGGTGTCCTGTCGGTCCTAAACGATCGAGGAAACGAACGTTTCTCGACA CTCTAAAGCGGGAAACAGGCCTGGAAACGCTAGAGCTCGGAACAGTAATG GCTGATCGTGAACTTTGGAGAGAGGGTTATTGTTTGTTTCTGACCTAGGT CCTCTCGGACCTAGATCGAAGGATGATGATGATGATGATATAGTCCCTAC CCCCATTGATGTCATTTCTACAGCGGAGTGTATTTTTTAAGTCTTTTCAA TAATTAATATTGAACTATTTCATTCGGTACCAATGACATAATTTGTATTA AATAATTCATATTTTGTATAGAATTCTGAGTCTGATACGGACTAGTACAA TAGTCGTTGAGAAAGACTCATTTTAAGTAAAATACAAAACAAACTCAAAA GTAATGATGGTGCATGGTCCGTTTTCCTCAAAAAGTGTTGATTTAAAATT TCAACCTTTTTTTTCTGTCTATGTTTACAGTTCCTGAAACTGTTCTTTTA TCTAAACCCAACACCAAAGACGTCTCCGCAAGACCTTCCATCACAACCAC GATTTCTACAACAACTACTACAACCTCTGCAACACGAGTCGCGACATCTG CAACCGACACTAAGAACGTCTCAACAACAACCCCGACAGTTTCAACGACA ACTACGACATCTGTCGTCTCTAGTGTTGTCAGTACCGTCACAGCCTCCTC TACGACACCTTCCAAGTAAGTAAAACTAATCAGAGAGGAGTATATTTGAT TCTAGAATACTAGAATAAGAGTAATTTATTAACTCTTTCGGAGGCAATTT TTCGAGGGGGGGGGGCGAATTTCTTAGAATCAATGATATTTTTAAAGATA TATTTCTATTTCTTCTTTCTTTTTGGCCATGTCCGTCCGTCCGTCCGTTC GTTCGTTCGTTCGTCTGTTGCCAGCTTTTTTCAGGATTGGCTCATTAGTT TTTTTTGATTTTTGGCATAAAGATGCAAAATGGCAATGCCCAAAATGTGA CGGAGCCCGATTTTCGAAAAAAAACATTTCCGGCGGTAAATACCGGAAAT ATGCCGGAAAAACTGTTTTTTTGGCATTTTCACGAGATTTTATCATTAGT TTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAACATG GCCGAGTCCAATTTTTGAGAAAGAATTTTTTCGGTCGAAAATGCCGGAAA TATGCCGGAAATCGCCGTTTTTCTGGATTTTCATTGGATTTTTTTCTTAT AATTGG

Coding sequence (CDS) from alignment at sc0002026:9..5064-

>TCONS_00039152 ID=TCONS_00039152|Name=TCONS_00039152|organism=Clytia hemisphaerica|type=CDS|length=2712bp|location=Sequence derived from alignment at sc0002026:9..5064- (Clytia hemisphaerica)
TTCCTGAAACTGTTCTTTTATCTAAACCCAACACCAAAGACGTCTCCGCA
AGACCTTCCATCACAACCACGATTTCTACAACAACTACTACAACCTCTGC
AACACGAGTCGCGACATCTGCAACCGACACTAAGAACGTCTCAACAACAA
CCCCGACAGTTTCAACGACAACTACGACATCTGTCGTCTCTAGTGTTGTC
AGTACCGTCACAGCCTCCTCTACGACACCTTCCAAGTAACTTGAATCAAA
AACAAAAAAGACTGAAGTGAAGACAGACACGACCGCTTCCACAACACATG
TGGCTGTTGCAACCCCATCTTCCACGACCAAAGACAGTAAGGCGGTCGTC
GAAGAAACAATCATGAAATCTGTTGCAAATGTTGCTTTATCTGCACCAGG
TCGAAAAGAACCAGATCTTAACAAATTTAAAGATTTTTCACACTCCTTCA
AAATTTTGCTATTTTCCAGCGGGTATCCTCACATTTCCAAGAATTTATTC
TTGACTTTAAAAGGTTCGTCCAGGTACGCCCCGAAAGCTTCGTATAGTAG
TCGACTAAGCACGACGAACAAGACGGCGGCGGTTGAACACACGCGCATGG
AGCAGATGCCAAGCACGACGCCAAGAGGACAGGGCGAAGTCATCAAGTTC
GGAAAAATCAATAAGATTAATGAGGATGTTCCTGAAACTGTTCTTTTATC
TAAACCCAACACCAAAGACGTCTCCGCAAGACCTTCCATCACAACCACGA
TTTCTACAACAACTACTACAACCTCTGCAACACGAGTCGCGACATCTGCA
ACCGACACTAAGAACGTCTCAACAACAACCCCGACAGTTTCAACGACAAC
TACGACATCTGTCGTCTCTAGTGTTGTCAGTACCGTCACAGCCTCCTCTA
CGACACCTTCCAAGTAACTTGAATCAAAAACAAAAAAGACTGAAGTGAAG
ACAGACACGACCGCTTCCACAACACATGTGGCTGTTGCAACCCCATCTTC
CACGACCAAAGACAGTAAGGCGGTCGTCGAAGAAACAATCATGAAATCTG
TTGCAAATGTTGCTTTATCTGCACCAGGTCGAAAAGAACCAGATCTTAAC
AAATTTAAAGATTTTTCACACTCCTTCAAAATTTTGCTATTTTCCAGCGG
GTATCCTCACATTTCCAAGAATTTATTCTTGACTTTAAAAGGTTCGTCCA
GGTACGCCCCGAAAGCTTCGTATAGTAGTCGACTAAGCACGACGAACAAG
ACGGCGGCGGTTGAACACACGCGCATGGAGCAGATGCCAAGCACGACGCC
AAGAGGACAGGGCGAAGTCATCAAGTTCGGAAAAATCAATAAGATTAATG
AGGATGTTCCTGAAACTGTTCTTTTATCTAAACCCAACACCAAAGACGTC
TCCGCAAGACCTTCCATCACAACCACGATTTCTACAACAACTACTACAAC
CTCTGCAACACGAGTCGCGACATCTGCAACCGACACTAAGAACGTCTCAA
CAACAACCCCGACAGTTTCAACGACAACTACGACATCTGTCGTCTCTAGT
GTTGTCAGTACCGTCACAGCCTCCTCTACGACACCTTCCAAGTAACTTGA
ATCAAAAACAAAAAAGACTGAAGTGAAGACAGACACGACCGCTTCCACAA
CACATGTGGCTGTTGCAACCCCATCTTCCACGACCAAAGACAGTAAGGCG
GTCGTCGAAGAAACAATCATGAAATCTGTTGCAAATGTTGCTTTATCTGC
ACCAGGTCGAAAAGAACCAGATCTTAACAAATTTAAAGATTTTTCACACT
CCTTCAAAATTTTGCTATTTTCCAGCGGGTATCCTCACATTTCCAAGAAT
TTATTCTTGACTTTAAAAGGTTCGTCCAGGTACGCCCCGAAAGCTTCGTA
TAGTAGTCGACTAAGCACGACGAACAAGACGGCGGCGGTTGAACACACGC
GCATGGAGCAGATGCCAAGCACGACGCCAAGAGGACAGGGCGAAGTCATC
AAGTTCGGAAAAATCAATAAGATTAATGAGGATGTTCCTGAAACTGTTCT
TTTATCTAAACCCAACACCAAAGACGTCTCCGCAAGACCTTCCATCACAA
CCACGATTTCTACAACAACTACTACAACCTCTGCAACACGAGTCGCGACA
TCTGCAACCGACACTAAGAACGTCTCAACAACAACCCCGACAGTTTCAAC
GACAACTACGACATCTGTCGTCTCTAGTGTTGTCAGTACCGTCACAGCCT
CCTCTACGACACCTTCCAAGTAACTTGAATCAAAAACAAAAAAGACTGAA
GTGAAGACAGACACGACCGCTTCCACAACACATGTGGCTGTTGCAACCCC
ATCTTCCACGACCAAAGACAGTAAGGCGGTCGTCGAAGAAACAATCATGA
AATCTGTTGCAAATGTTGCTTTATCTGCACCAGGTCGAAAAGAACCAGAT
CTTAACAAATTTAAAGATTTTTCACACTCCTTCAAAATTTTGCTATTTTC
CAGCGGGTATCCTCACATTTCCAAGAATTTATTCTTGACTTTAAAAGGTT
CGTCCAGGTACGCCCCGAAAGCTTCGTATAGTAGTCGACTAAGCACGACG
AACAAGACGGCGGCGGTTGAACACACGCGCATGGAGCAGATGCCAAGCAC
GACGCCAAGAGGACAGGGCGAAGTCATCAAGTTCGGAAAAATCAATAAGA
TTAATGAGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023580XLOC_023580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039152-exon-sc0002026-1575043694:4839..5064TCONS_00039152-exon-sc0002026-1575043694:4839..5064Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1575043694:3207..3259TCONS_00039152-exon-sc0002026-1575043694:3207..3259Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1575043694:1421..1580TCONS_00039152-exon-sc0002026-1575043694:1421..1580Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1575043694:9..784TCONS_00039152-exon-sc0002026-1575043694:9..784Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1510915933:4839..5064TCONS_00039152-exon-sc0002026-1510915933:4839..5064Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1510915933:3207..3259TCONS_00039152-exon-sc0002026-1510915933:3207..3259Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1510915933:1421..1580TCONS_00039152-exon-sc0002026-1510915933:1421..1580Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1510915933:9..784TCONS_00039152-exon-sc0002026-1510915933:9..784Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1491911889:4839..5064TCONS_00039152-exon-sc0002026-1491911889:4839..5064Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1491911889:3207..3259TCONS_00039152-exon-sc0002026-1491911889:3207..3259Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1491911889:1421..1580TCONS_00039152-exon-sc0002026-1491911889:1421..1580Clytia hemisphaericaexon
TCONS_00039152-exon-sc0002026-1491911889:9..784TCONS_00039152-exon-sc0002026-1491911889:9..784Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039152-proteinTCONS_00039152-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002026supercontigsc0002026:9..5064 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 1.69568 4.88382 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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