TCONS_00039150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039150
Unique NameTCONS_00039150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039150 ID=TCONS_00039150|Name=TCONS_00039150|organism=Clytia hemisphaerica|type=transcript|length=295bp
CACACCAAAAAACGAGGagaaaatcagtataaaatTTAGACAAGATTCAC
AAGAAACGCAATCGTCAAACGAAAACGAATCCACATCACAATTGTTGGAT
GAACCCACGCCCACACAATCGACAACTCAGCTATCGTCTGatgaaaattc
gcaaacggaaAACGACACGTCAGATGAAGATTCAGAGGACACCATTTCTT
GGACGAGAGGTGAAGATTaagtactttcaaggtttggcCCATCTAATGGG
CTCGTCAATCGTCAACGttgtttgtttcaaaatttgctACTTCTT
Run BLAST on NCBI

transcript from alignment at sc0002025:18271..18838-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039150 ID=TCONS_00039150|Name=TCONS_00039150|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0002025:18271..18838- (Clytia hemisphaerica)
CACACCAAAAAACGAGGAGAAAATCAGTATAAAATTTAGACAAGGTATGC
CCTTTCAGGCTCCGTAGATGGCTCTATAAATGACCCTTGTTACGTAATTG
TTCGACTTTTTCCAGCCCCCTGTCTTTTGAGATTCCTCTAATCTGAAGAA
AGTCCCTTCCTGGTTTTAGTCTATAATCATACAACTTTTAATTTTAAGGC
TTTCTCTCCAAGCAATTAAACCCACTTTTAATGATTGTTTCGTAACGAAG
AAAAGGGCATGGTTTAGCTTTGTAGAAAATAGTCTCTAAACAATTATAAA
CTATACTAAATATCTAGATTCACAAGAAACGCAATCGTCAAACGAAAACG
AATCCACATCACAATTGTTGGATGAACCCACGCCCACACAATCGACAACT
CAGCTATCGTCTGATGAAAATTCGCAAACGGAAAACGACACGTCAGATGA
AGATTCAGAGGACACCATTTCTTGGACGAGAGGTGAAGATTAAGTACTTT
CAAGGTTTGGCCCATCTAATGGGCTCGTCAATCGTCAACGTTGTTTGTTT
CAAAATTTGCTACTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023579XLOC_023579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039150-exon-sc0002025-1575043694:18795..18838TCONS_00039150-exon-sc0002025-1575043694:18795..18838Clytia hemisphaericaexon
TCONS_00039150-exon-sc0002025-1575043694:18271..18521TCONS_00039150-exon-sc0002025-1575043694:18271..18521Clytia hemisphaericaexon
TCONS_00039150-exon-sc0002025-1510915933:18795..18838TCONS_00039150-exon-sc0002025-1510915933:18795..18838Clytia hemisphaericaexon
TCONS_00039150-exon-sc0002025-1510915933:18271..18521TCONS_00039150-exon-sc0002025-1510915933:18271..18521Clytia hemisphaericaexon
TCONS_00039150-exon-sc0002025-1491911889:18795..18838TCONS_00039150-exon-sc0002025-1491911889:18795..18838Clytia hemisphaericaexon
TCONS_00039150-exon-sc0002025-1491911889:18271..18521TCONS_00039150-exon-sc0002025-1491911889:18271..18521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002025supercontigsc0002025:18271..18838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.40132	0	0	0	0	0	0	0	0.429567	1.25085	0.274086	0.547409	1.70547	0	1.00313	0.308944	0	1.74992	0	0	0	0.943735	0.428996	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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