TCONS_00039149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039149
Unique NameTCONS_00039149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039149 ID=TCONS_00039149|Name=TCONS_00039149|organism=Clytia hemisphaerica|type=transcript|length=1115bp
NTCCGGAAAAACGAGCTGGTTCAGTTGTTTTCAAGGAATCATCCCGTCCA
AATATATTGCGGGTGTGATGAACGACGGGCGATTCTCAGCAGCTTTGATA
AACAGTAACACCCAGATTGTGATGATGGATGAGTGGACCCCTGACTCTTT
GTCATGTGAAGATGCCAAACGTGTCCTTCAAAGCGGAATGAATTTTCTAC
CCCAGAAACACAAGAGCGGCTTACGTGTCAACTACAATTCCGGTTTTTTT
ATAACCACCAACGTCTATCCGGATTTCGGCAACGAAAGAGACTGCGATGC
GATAAGAAAAAGACTTGAAGTTTTCCGAACGACatcattgaagcgaaaag
attCATCAGTCTCAGCTTGGCTGAGAATGAATTGTATGATGGTGTTTCAT
TTTCTGGCCCACGAATTGCGAAACGAACCCATCTTTGATACACCCAACGT
GGCACCTGCTGCTGGGAATGGAGCAATCTACAACGACTTTGATTTTGATC
CCATGTCTTTGATGTACGACGATCAAGTCGAGTTATTCTCATTCAGCCAA
CTAGCTGCTCCGGCTGCAGTCCAAGATTCCGGTAACGAAGTATCAGGCTT
AACTCAAGCATTAGACCATGCCGTCTTGGAAGCTGACCGTCACGAAGGCA
TTCACTACGAAGATTTGCAGTGGGAAACACCTTTATTCGACAACGCCAGC
GAACACTGTGACGACGTCTATGTCCAAAAAGTCGTTACTCTTGCTTCAAA
CAAGACTGGAGCTTGGGACGAGTTGGCCTTGACTGACAACGCGAAGAACA
TGTTCAGGCGACGATTGAGAGCGAAGTGGGAAGGTGCAGATTCCGTGTAC
GATGCTTGGTTGATTCGAAAAGGTTGTCAGCGACCTTGGTTTGACTATCA
TCTTTTAGACACCCAATATCCAGAGTTTGATGCGGACTTAGAGCAAGAAC
CACCAACTCAAGTCGTCACAGGCGTCCCCGAAACGCCTACCAAGCAGAGC
ACCTCCTGCCAGccaccagaatcaccaaaacCTGACGATGCCAACAGTCA
GAAATCCATCGATTCTGTTATCACGTCCTATCAGCCGCCAAAATCACCTA
AATCTGACGATGAAA
Run BLAST on NCBI

protein sequence of TCONS_00039149-protein

>TCONS_00039149-protein ID=TCONS_00039149-protein|Name=TCONS_00039149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
SGKTSWFSCFQGIIPSKYIAGVMNDGRFSAALINSNTQIVMMDEWTPDSL
SCEDAKRVLQSGMNFLPQKHKSGLRVNYNSGFFITTNVYPDFGNERDCDA
IRKRLEVFRTTSLKRKDSSVSAWLRMNCMMVFHFLAHELRNEPIFDTPNV
APAAGNGAIYNDFDFDPMSLMYDDQVELFSFSQLAAPAAVQDSGNEVSGL
TQALDHAVLEADRHEGIHYEDLQWETPLFDNASEHCDDVYVQKVVTLASN
KTGAWDELALTDNAKNMFRRRLRAKWEGADSVYDAWLIRKGCQRPWFDYH
LLDTQYPEFDADLEQEPPTQVVTGVPETPTKQSTSCQPPESPKPDDANSQ
KSIDSVITSYQPPKSPKSDDE
Run BLAST on NCBI

transcript from alignment at sc0002024:24924..26456-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039149 ID=TCONS_00039149|Name=TCONS_00039149|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at sc0002024:24924..26456- (Clytia hemisphaerica)
NTCCGGAAAAACGAGCTGGTTCAGTTGTTTTCAAGGAATCATCCCGTCCA
AATATATTGCGGGTGTGATGAACGACGGGCGATTCTCAGCAGCTTTGATA
AACAGTAACACCCAGATTGTGATGATGGATGAGTGGACCCCTGACTCTTT
GTCATGTGAAGATGCCAAACGTGTCCTTCAAAGTGAGTGAATTGATTCAC
ATTGTTCTTTTTTTGTGGCCCTGACGAAGGCGACGAAAAATCGCTTTTGG
TTTATCTTTACGCTTGCGCACTTTGAAGATATTTAAAGAAAAAAAACTTG
AAAGTTTGCTTTCTTCCTATGTCCGGTTATTCATGAAGATTACCGCTTGA
TTTGCACGTAACTCAAAAACCTCATTTTCGTTTTTATTTCTCCAGGCGGA
ATGAATTTTCTACCCCAGAAACACAAGAGCGGCTTACGTGTCAACTACAA
TTCCGGTTTTTTTATAACCACCAACGTCTATCCGGATTTCGGCAACGAAA
GAGACTGCGATGCGATAAGAAAAAGACTTGAAGTTTTCCGAACGACATCA
TTGAAGCGAAAAGATTCATCAGTCTCAGGTAAGACAAAAAGCTGACAGTT
TCACACGTCATTTAATCTTTGGCACTTTGACTTTTAGGGTGCATTCACTC
GTTTAGAAATGAGGGAGTCTCCGAATGTGAAGATAAATATGTTTCCTTTT
TCTGCTACTCTATTTGGAACGAGAATCTGAAAAGAGTTTGTTTTTCCAAA
TTCAATGACAAACTATTTTTTTTATCTCTTCAGCTTGGCTGAGAATGAAT
TGTATGATGGTGTTTCATTTTCTGGCCCACGAATTGCGAAACGAACCCAT
CTTTGATACACCCAACGTGGCACCTGCTGCTGGGAATGGAGCAATCTACA
ACGACTTTGATTTTGATCCCATGTCTTTGATGTACGACGATCAAGTCGAG
TTATTCTCATTCAGCCAACTAGCTGCTCCGGCTGCAGTCCAAGATTCCGG
TAACGAAGTATCAGGCTTAACTCAAGCATTAGACCATGCCGTCTTGGAAG
CTGACCGTCACGAAGGCATTCACTACGAAGATTTGCAGTGGGAAACACCT
TTATTCGACAACGCCAGCGAACACTGTGACGACGTCTATGTCCAAAAAGT
CGTTACTCTTGCTTCAAACAAGACTGGAGCTTGGGACGAGTTGGCCTTGA
CTGACAACGCGAAGAACATGTTCAGGCGACGATTGAGAGCGAAGTGGGAA
GGTGCAGATTCCGTGTACGATGCTTGGTTGATTCGAAAAGGTTGTCAGCG
ACCTTGGTTTGACTATCATCTTTTAGACACCCAATATCCAGAGTTTGATG
CGGACTTAGAGCAAGAACCACCAACTCAAGTCGTCACAGGCGTCCCCGAA
ACGCCTACCAAGCAGAGCACCTCCTGCCAGCCACCAGAATCACCAAAACC
TGACGATGCCAACAGTCAGAAATCCATCGATTCTGTTATCACGTCCTATC
AGCCGCCAAAATCACCTAAATCTGACGATGAAA

Coding sequence (CDS) from alignment at sc0002024:24924..26456-

>TCONS_00039149 ID=TCONS_00039149|Name=TCONS_00039149|organism=Clytia hemisphaerica|type=CDS|length=3339bp|location=Sequence derived from alignment at sc0002024:24924..26456- (Clytia hemisphaerica)
CTTGGCTGAGAATGAATTGTATGATGGTGTTTCATTTTCTGGCCCACGAA
TTGCGAAACGAACCCATCTTTGATACACCCAACGTGGCACCTGCTGCTGG
GAATGGAGCAATCTACAACGACTTTGATTTTGATCCCATGTCTTTGATGT
ACGACGATCAAGTCGAGTTATTCTCATTCAGCCAACTAGCTGCTCCGGCT
GCAGTCCAAGATTCCGGTAACGAAGTATCAGGCTTAACTCAAGCATTAGA
CCATGCCGTCTTGGAAGCTGACCGTCACGAAGGCATTCACTACGAAGATT
TGCAGTGGGAAACACCTTTATTCGACAACGCCAGCGAACACTGTGACGAC
GTCTATGTCCAAAAAGTCGTTACTCTTGCTTCAAACAAGACTGGAGCTTG
GGACGAGTTGGCCTTGACTGACAACGCGAAGAACATGTTCAGGCGACGAT
TGAGAGCGAAGTGGGAAGGTGCAGATTCCGTGTACGATGCTTGGTTGATT
CGAAAAGGTTGTCAGCGACCTTGGTTTGACTATCATCTTTTAGACACCCA
ATATCCAGAGTTTGATGCGGACTTAGAGCAAGAACCACCAACTCAAGTCG
TCACAGGCGTCCCCGAAACGCCTACCAAGCAGAGCACCTCCTGCCAGCCA
CCAGAATCACCAAAACCTGACGATGCCAACAGTCAGAAATCCATCGATTC
TGTTATCACGTCCTATCAGCCGCCAAAATCACCTAAATCTGACGATGAAG
CGGAATGAATTTTCTACCCCAGAAACACAAGAGCGGCTTACGTGTCAACT
ACAATTCCGGTTTTTTTATAACCACCAACGTCTATCCGGATTTCGGCAAC
GAAAGAGACTGCGATGCGATAAGAAAAAGACTTGAAGTTTTCCGAACGAC
ATCATTGAAGCGAAAAGATTCATCAGTCTCAGTCCGGAAAAACGAGCTGG
TTCAGTTGTTTTCAAGGAATCATCCCGTCCAAATATATTGCGGGTGTGAT
GAACGACGGGCGATTCTCAGCAGCTTTGATAAACAGTAACACCCAGATTG
TGATGATGGATGAGTGGACCCCTGACTCTTTGTCATGTGAAGATGCCAAA
CGTGTCCTTCAAACTTGGCTGAGAATGAATTGTATGATGGTGTTTCATTT
TCTGGCCCACGAATTGCGAAACGAACCCATCTTTGATACACCCAACGTGG
CACCTGCTGCTGGGAATGGAGCAATCTACAACGACTTTGATTTTGATCCC
ATGTCTTTGATGTACGACGATCAAGTCGAGTTATTCTCATTCAGCCAACT
AGCTGCTCCGGCTGCAGTCCAAGATTCCGGTAACGAAGTATCAGGCTTAA
CTCAAGCATTAGACCATGCCGTCTTGGAAGCTGACCGTCACGAAGGCATT
CACTACGAAGATTTGCAGTGGGAAACACCTTTATTCGACAACGCCAGCGA
ACACTGTGACGACGTCTATGTCCAAAAAGTCGTTACTCTTGCTTCAAACA
AGACTGGAGCTTGGGACGAGTTGGCCTTGACTGACAACGCGAAGAACATG
TTCAGGCGACGATTGAGAGCGAAGTGGGAAGGTGCAGATTCCGTGTACGA
TGCTTGGTTGATTCGAAAAGGTTGTCAGCGACCTTGGTTTGACTATCATC
TTTTAGACACCCAATATCCAGAGTTTGATGCGGACTTAGAGCAAGAACCA
CCAACTCAAGTCGTCACAGGCGTCCCCGAAACGCCTACCAAGCAGAGCAC
CTCCTGCCAGCCACCAGAATCACCAAAACCTGACGATGCCAACAGTCAGA
AATCCATCGATTCTGTTATCACGTCCTATCAGCCGCCAAAATCACCTAAA
TCTGACGATGAAGCGGAATGAATTTTCTACCCCAGAAACACAAGAGCGGC
TTACGTGTCAACTACAATTCCGGTTTTTTTATAACCACCAACGTCTATCC
GGATTTCGGCAACGAAAGAGACTGCGATGCGATAAGAAAAAGACTTGAAG
TTTTCCGAACGACATCATTGAAGCGAAAAGATTCATCAGTCTCAGTCCGG
AAAAACGAGCTGGTTCAGTTGTTTTCAAGGAATCATCCCGTCCAAATATA
TTGCGGGTGTGATGAACGACGGGCGATTCTCAGCAGCTTTGATAAACAGT
AACACCCAGATTGTGATGATGGATGAGTGGACCCCTGACTCTTTGTCATG
TGAAGATGCCAAACGTGTCCTTCAAACTTGGCTGAGAATGAATTGTATGA
TGGTGTTTCATTTTCTGGCCCACGAATTGCGAAACGAACCCATCTTTGAT
ACACCCAACGTGGCACCTGCTGCTGGGAATGGAGCAATCTACAACGACTT
TGATTTTGATCCCATGTCTTTGATGTACGACGATCAAGTCGAGTTATTCT
CATTCAGCCAACTAGCTGCTCCGGCTGCAGTCCAAGATTCCGGTAACGAA
GTATCAGGCTTAACTCAAGCATTAGACCATGCCGTCTTGGAAGCTGACCG
TCACGAAGGCATTCACTACGAAGATTTGCAGTGGGAAACACCTTTATTCG
ACAACGCCAGCGAACACTGTGACGACGTCTATGTCCAAAAAGTCGTTACT
CTTGCTTCAAACAAGACTGGAGCTTGGGACGAGTTGGCCTTGACTGACAA
CGCGAAGAACATGTTCAGGCGACGATTGAGAGCGAAGTGGGAAGGTGCAG
ATTCCGTGTACGATGCTTGGTTGATTCGAAAAGGTTGTCAGCGACCTTGG
TTTGACTATCATCTTTTAGACACCCAATATCCAGAGTTTGATGCGGACTT
AGAGCAAGAACCACCAACTCAAGTCGTCACAGGCGTCCCCGAAACGCCTA
CCAAGCAGAGCACCTCCTGCCAGCCACCAGAATCACCAAAACCTGACGAT
GCCAACAGTCAGAAATCCATCGATTCTGTTATCACGTCCTATCAGCCGCC
AAAATCACCTAAATCTGACGATGAAGCGGAATGAATTTTCTACCCCAGAA
ACACAAGAGCGGCTTACGTGTCAACTACAATTCCGGTTTTTTTATAACCA
CCAACGTCTATCCGGATTTCGGCAACGAAAGAGACTGCGATGCGATAAGA
AAAAGACTTGAAGTTTTCCGAACGACATCATTGAAGCGAAAAGATTCATC
AGTCTCAGTCCGGAAAAACGAGCTGGTTCAGTTGTTTTCAAGGAATCATC
CCGTCCAAATATATTGCGGGTGTGATGAACGACGGGCGATTCTCAGCAGC
TTTGATAAACAGTAACACCCAGATTGTGATGATGGATGAGTGGACCCCTG
ACTCTTTGTCATGTGAAGATGCCAAACGTGTCCTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023578XLOC_023578Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039149-proteinTCONS_00039149-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039149-exon-sc0002024-1575043694:26275..26456TCONS_00039149-exon-sc0002024-1575043694:26275..26456Clytia hemisphaericaexon
TCONS_00039149-exon-sc0002024-1575043694:25879..26061TCONS_00039149-exon-sc0002024-1575043694:25879..26061Clytia hemisphaericaexon
TCONS_00039149-exon-sc0002024-1575043694:24924..25673TCONS_00039149-exon-sc0002024-1575043694:24924..25673Clytia hemisphaericaexon
TCONS_00039149-exon-sc0002024-1510915933:26275..26456TCONS_00039149-exon-sc0002024-1510915933:26275..26456Clytia hemisphaericaexon
TCONS_00039149-exon-sc0002024-1510915933:25879..26061TCONS_00039149-exon-sc0002024-1510915933:25879..26061Clytia hemisphaericaexon
TCONS_00039149-exon-sc0002024-1510915933:24924..25673TCONS_00039149-exon-sc0002024-1510915933:24924..25673Clytia hemisphaericaexon
TCONS_00039149-exon-sc0002024-1491911889:26275..26456TCONS_00039149-exon-sc0002024-1491911889:26275..26456Clytia hemisphaericaexon
TCONS_00039149-exon-sc0002024-1491911889:25879..26061TCONS_00039149-exon-sc0002024-1491911889:25879..26061Clytia hemisphaericaexon
TCONS_00039149-exon-sc0002024-1491911889:24924..25673TCONS_00039149-exon-sc0002024-1491911889:24924..25673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002024supercontigsc0002024:24924..26456 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156635	0.152743	0	0.0433773	0.0528076	0.0834586	0.251723	0.424188	0.197989	0.490484	0.39673	0.443351	0.494821	2.0295	0.444712	0.760903	0.357656	0.676556	0.707651	0.446121	0.378608	0.72022	0.187974	0.326554	0.210215	0.0750446	2.53182	1.69186	1.13004	1.01849
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top