TCONS_00039143 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039143
Unique Name	TCONS_00039143
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	297

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002023:4584..10513+

transcript sequence

>TCONS_00039143 ID=TCONS_00039143|Name=TCONS_00039143|organism=Clytia hemisphaerica|type=transcript|length=297bp
ttatagCCTTTTctggacaaaaatgtccttcgtccgccaaattgaattcc
caccaaaatttcttcctttaatgtattttCCTATTATAGGTGAACTTGAA
GACAGACCCGCCCGATGTCTTccaaaattgataattttacacAAGTTAAT
AAAGATATCGAGTATGGAATATGGACCCAAAGAATTCCTATGgaTGATTC
AAATTCAATGAGCGGCACAACCCAAAGCAGTCTAGCTGTCATGCGTGAAT
TTTGTAGCACTTTTTCTTCCTCTATCTTGAAATGAACTCTGACAGGT

Run BLAST on NCBI

transcript from alignment at sc0002023:4584..10513+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039143 ID=TCONS_00039143|Name=TCONS_00039143|organism=Clytia hemisphaerica|type=transcript|length=5930bp|location=Sequence derived from alignment at sc0002023:4584..10513+ (Clytia hemisphaerica)
ttatagCCTTTTctggacaaaaatgtccttcgtccgccaaattgaattcc
caccaaaatttcttcctttaatgtattttCCTATTATAGGTGAACTTGAA
GACAGACCCGCCCGATGTCTTccaaaattgataattttacacAAGTTAAT
AAAGATATCGAGTATGGAATATGGACCCAAAGAATTCCTATGGTAAGTTT
TATGTATAGCTTAGAAGAttagtttaatattttaatgttcggattttttt
ctttcacttgaACCAAAATATCTGCTTCATAATAAACTTTTCGTTTATTG
GTGCTAAATAGCCCTCTTGAGAAAGGTCAACTTATGCAAAcactttaaat
caaaatttgagtTAAATTGAAGGGATATTAAATGTAAGGTAACTTCCATG
ACAATTTTTATCCAAAGAGGAAGGTTAATGTCTCCTTACAGAGGATGCCA
GGTACTGTATTGAGCGGTCTAATAGTCGCTTTGTCTTGTACTCATTCTAG
TTTATACTGCCTGTTAGCTTGCGAGACACTGTTCCATGTGGACTTTTTAC
GTGTGTCCTTTTTTCGCGAATCAAAGATCTGAAATTTTCGCGTTGATTAC
TTACACATACATACATAATTCATGCACTTGAAAATGACGACATTGGTCCT
ATCTCTCCACTTGTTCCTGTCGTTTACCGAACGAATTATTTCATCCTTTG
TGAGCGCAGTGTCTGGTTCGATGACCTTATTGAGTGTTTTCTGAAGTCGA
CCTTTTTTCATCGTCAAGTGGGACGGGATCCCTAAGAATCAATTTCGTAG
CGGGTTAATACCCTCTGATGGCATTATGACCGGTAAGTTGCAGTCTCCTC
TTTTGAATTAAGCTGCTTTCTTTTGGATAAAGCTGCTTACTTTTGGATGT
GTCCCATAAAAAACCTTGTTTGACACGTGATTATCGGTGGGTAGGCTCTG
AATAGTTTCTTCGTAAGGACAGTCGTGATTGACCAAGATTCACACGATGA
AGGAGGATAGATGCCACTGGTTTCAGATTCATACTAAATCTCCAGACTTT
ATCAAGTGAATTTAACACAGATTAGGCTTGAGAAAGTCTTGTATGAATGT
CGTGACTATACAAACAGGTGTCATGGCCATTGCTGTGTTCTTTCTGTGCA
AGATTTCAATGGCGTTGACAATTTTCTCCGAAATCCCATAGGCAAGAAGA
ATCTTGTACATAGTCTTGCTATCAATACTATTATCTTCATTGGTTGACAG
AGATTATCAAAGCTCAAAACCTCAATTCAAANNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNCAAAAGGCCCTCGATGCTCCAAACCTCAAACGGGAGCCCA
TCAAGTCCTGAGGCTTTTTTTCCAGACTTCATCTGTTTGATAGCCTTCTT
GATCTCGTCTATTGTAAAATCCACAGACGATATTTTTGTGCAAACAGGAA
ATATTGATTGTCGCTATTGTTATCAAAATTGACAGATAGATATGGTTGAC
TACGATACATATGGTAGAAGTTTCTTAAAATAATCTTTTCAGCTTTTCTT
TGGGTCATCACTTTTGATTGAGACTGATACTGCTTTTTTCTTTCCTCCTT
TTTCCTTGATAAGTTTCTGAGCATTTTTCAGGTTGTTTGTAGCATCCGAC
TTGTTTGCTTGGTTAAGAATTCGAGTTGGATGGTACACACGCTGAAGATT
CAGTCGATTTCTTTGGAGATCGTCATCTTTAATTGATGAGCTTGTGAAAT
GGTTAGGGGTTCGAACTCTTTGTCGCTTGTTTTGACAAGAATGTGTTTCT
TGCAGGAAGACATACTAACAACGAGAAAGGTGTAATAGTCTCATTCTATT
TCATTTGAACTTCATTGGAAATTGTAGACGATATTATCTGGTCTCTTAAT
GTAGCCCAGTTAATATTCTTGGTAAAGATTTTTTTAGTAGTGCGCAGGTT
CAATTTACATTCACAAACTACGATGAGATGATCGGAACCGACAGGGTTAA
ATGATGAGTGAACTTGGTAGTCATGTAGAGTGTTTCTCCAACGGTTACCT
TACGGTAGAGAATGTAGTCAATCTTGGAAAGTTGATTCAGAGGAGATCGC
CAGACTTTTTCTCCGTTTCTAAAGCATATATTTGAATCAAGTAAATTAAA
TTCATGAAATCTTGTAAGTGAGAGCGATTCCTGTTGTCAGCTGAATAATA
GGAAAATACACCTTTCAGTTGGGCATTGAAGTCACCACAGACAAGTAAGA
ATGAATGATTTAAAATGGATGTAATGTGATTAGGGAGGGATTCAAAAAGT
TCCTCGACTTCGGCTTCTGTTTGAGCAGACGATTGTGGTTTTAGAGTTAT
AGGGTTTCCTATGAAGGTGACTGATACGAAACGATCAGAAATTTCATCGA
TTGGCAATATTATGACCTCCTTGCAGACGCTGTAAAATGTGTATATAGGA
ACCAAAGACATGAGAAACGGTTGGTGGGTCGGTATCAAAATGCATTATTG
GATGAAAAGCACAGACCGAGACGTTGTGCTTGAAGGACTTGTTTGAATTC
TTTTCTCGTGGCTGTCGAGTTTAGGGTACGGAAATTTAGTTTAACAATCA
TactgtacatgtttttttacaaGCATTGTATTTACAAGCATATATAGGCT
TGGATATGGCAAAAAGATTAAGCATATGGTATGTacaatttggctgtttt
tttggCTGGGATTTTACGGATTTTTAGAATTCCCCTAAATTTCTGCTTAT
GATATAAGCATCCTCCAAGCATTATCAGCCCTGACAATCTCTCGAATCTC
ACTCCGAAtcagtttttggatttttgtatgcttatataaaaaaacaaaac
atttaggGATGTTAACCAAATGGTTCTTTTCCCTTTCTTCTGTTATAAGC
AGTTATAAGTATGAATCCCTCTATTCGGGTTTAGGATAGATGCTTCATCA
CGATTCTCAAAGACACTATCAGACTCGAATGTATGACTAAACATTTCAAG
GCCTTCAAAATTGGTACTGTTTTGAGACATAATTCATGATTTCTTATACG
TAAACATAATAACAGTGAGTGGCTGATTTCTGTCGTTGCCTTGTCCTACT
CTGTAAACAGAAGCTATGCACAAGAACAATGAACAATGCCAGAGAGTCGG
TACGTTGACACCTGCCATTGACACTACGACTGCCACCAAGAGAAGTTGCT
TGGTTTGGTGTGTGTTGTCCTTCACTATCAGACCTCCACTAGACTGGATG
CGTTATAATTCTGATTCTTCACCCTAGGCTTGTCGGAAGACATGATAATG
CTTGGCCTCCATTAGGCCAGCAACTACCAACCCTCATATAAGCTTTAGCT
CTCAGAAAGAATCACCCCTGGCTCCCTAAGCGCGGTGGATTTGATTCAAA
CTAAAAGTTACGACACCAGAAagctgaaatttatttttattcaggTTCCT
CTAGATCCACTCCTTCAGGATGTGGCTCCCAAAGTACAGGTAGAACTGAC
CTGTACAGAAAACTTTCTGATTGACCGCTAACATAACCCGGGTCGGGAAG
TTTTGGCTACTGAAGGGCAAACTGCGCGAACTTTAGATAGTTATACGGCA
ATTGAATTAGGACTTCATAATATGCTTTAAAGCTCAAAGTTTTGGCTTTA
ACTAtcaatctttattttattttaggaTGATTCAAATTCAATGAGCGGCA
CAACCCAAAGCAGTCTAGCTGTCATGCGTGAATTTTGTAGCACTTTTTCT
TCCTCTATCTTGAAATGAACTCTGACAGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023573	XLOC_023573	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00039143-exon-sc0002023-1491911889:4584..4775	TCONS_00039143-exon-sc0002023-1491911889:4584..4775	Clytia hemisphaerica	exon
TCONS_00039143-exon-sc0002023-1510915933:4584..4775	TCONS_00039143-exon-sc0002023-1510915933:4584..4775	Clytia hemisphaerica	exon
TCONS_00039143-exon-sc0002023-1575043694:4584..4775	TCONS_00039143-exon-sc0002023-1575043694:4584..4775	Clytia hemisphaerica	exon
TCONS_00039143-exon-sc0002023-1491911889:10409..10513	TCONS_00039143-exon-sc0002023-1491911889:10409..10513	Clytia hemisphaerica	exon
TCONS_00039143-exon-sc0002023-1510915933:10409..10513	TCONS_00039143-exon-sc0002023-1510915933:10409..10513	Clytia hemisphaerica	exon
TCONS_00039143-exon-sc0002023-1575043694:10409..10513	TCONS_00039143-exon-sc0002023-1575043694:10409..10513	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002023	supercontig	sc0002023:4584..10513 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60951	1.96191	0.911184	0	9.22468	11.1486	5.69051	11.6234	1.3563	1.26	4.07662	3.21577	1.87326	1.11166	0.228483	2.20678	1.51032	2.16723	0.427736	2.68557	1.55616	1.70785	3.2295	0.838882	4.75216	14.6514	3.31043	1.76649	1.78643	0.910044

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00039143 vs. Swiss-Prot (Human)

BLAST of TCONS_00039143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00039143 (transcript) - C. hemisphaerica