TCONS_00039140 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039140
Unique NameTCONS_00039140
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039140 ID=TCONS_00039140|Name=TCONS_00039140|organism=Clytia hemisphaerica|type=transcript|length=330bp
gattttttgacgtcttCGAAATCGAGCATGTGCACCGATGAATTCGTTTT
CGCATATTGGTCGGATTCGAACAGAGGTGGAATAAAAATGGCTTCGTGGA
GGGCAGAGTCGAAAAGTGCTGAATCAGCGTACTCACGTTCAAGAAGCTGA
TCAGCGGCTTTGATTGGGTCGTTGAAAAATCGTCCATTGCCTAAATtgaa
ctttttgttttgttcgTTCAATACTTTTTGTGGACTTTTTTTGATCTGTT
GATAAAGTGATTTTTGTGTACTGCAATTCGTTGGATCAATCGACATGGGT
TTTAAAGCAAATATCTCTTGTTGAAAACGT
Run BLAST on NCBI

protein sequence of TCONS_00039140-protein

>TCONS_00039140-protein ID=TCONS_00039140-protein|Name=TCONS_00039140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
RFQQEIFALKPMSIDPTNCSTQKSLYQQIKKSPQKVLNEQNKKFNLGNGR
FFNDPIKAADQLLEREYADSALFDSALHEAIFIPPLFESDQYAKTNSSVH
MLDFEDVKK
Run BLAST on NCBI

transcript from alignment at sc0002022:4609..4938

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039140 ID=TCONS_00039140|Name=TCONS_00039140|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at sc0002022:4609..4938 (Clytia hemisphaerica)
ACGTTTTCAACAAGAGATATTTGCTTTAAAACCCATGTCGATTGATCCAA
CGAATTGCAGTACACAAAAATCACTTTATCAACAGATCAAAAAAAGTCCA
CAAAAAGTATTGAAcgaacaaaacaaaaagttcaATTTAGGCAATGGACG
ATTTTTCAACGACCCAATCAAAGCCGCTGATCAGCTTCTTGAACGTGAGT
ACGCTGATTCAGCACTTTTCGACTCTGCCCTCCACGAAGCCATTTTTATT
CCACCTCTGTTCGAATCCGACCAATATGCGAAAACGAATTCATCGGTGCA
CATGCTCGATTTCGaagacgtcaaaaaatc

Coding sequence (CDS) from alignment at sc0002022:4609..4938

>TCONS_00039140 ID=TCONS_00039140|Name=TCONS_00039140|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0002022:4609..4938 (Clytia hemisphaerica)
CGTTTTCAACAAGAGATATTTGCTTTAAAACCCATGTCGATTGATCCAAC
GAATTGCAGTACACAAAAATCACTTTATCAACAGATCAAAAAAAGTCCAC
AAAAAGTATTGAAcgaacaaaacaaaaagttcaATTTAGGCAATGGACGA
TTTTTCAACGACCCAATCAAAGCCGCTGATCAGCTTCTTGAACGTGAGTA
CGCTGATTCAGCACTTTTCGACTCTGCCCTCCACGAAGCCATTTTTATTC
CACCTCTGTTCGAATCCGACCAATATGCGAAAACGAATTCATCGGTGCAC
ATGCTCGATTTCGaagacgtcaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023570XLOC_023570Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039140-proteinTCONS_00039140-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039140-exon-sc0002022-1491911889:4609..4938TCONS_00039140-exon-sc0002022-1491911889:4609..4938Clytia hemisphaericaexon
TCONS_00039140-exon-sc0002022-1510915933:4609..4938TCONS_00039140-exon-sc0002022-1510915933:4609..4938Clytia hemisphaericaexon
TCONS_00039140-exon-sc0002022-1575043694:4609..4938TCONS_00039140-exon-sc0002022-1575043694:4609..4938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002022supercontigsc0002022:4609..4938 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293195	0.285912	0	0	0	0.508148	0	0	0	0.480767	0	0	0.397328	0.629993	0	0	0.0403265	0	2.11778	0.36053	0.548296	0	0	0.705696	0.629582	0	0.899323	0	0.111421	0.663111
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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