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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039139 ID=TCONS_00039139|Name=TCONS_00039139|organism=Clytia hemisphaerica|type=transcript|length=1272bp
AACCTTCAAACAAGCTTGCATCCAAAAGCTGACAACGATGCAAGTATCTC
AACTCAAAGAAGCTTTAAAGGTTAAGAACTGTAAGAAAGGAATCGAAAAG
CTGGTCAAACAAAATCCACCAAAGGATCCCATCATGAGATGGTATTTCGA
ATTCCAACCTTCCGAAGTCGGTGAAAAAGCAGAGCATTCCGTTTTTGACC
ACCTTTATTCCCTCAAAGATGAGGAAGTGCTCCAAGACACAGTTATTCTG
AATTCTCTTGACTTTCGTACTAACGTGAGCAACCGAATGCAACAAGAATT
TGACGTTCTTCTTTTCTCTTGGTCCAGAAAATTGATCATCGGTATAGAAA
TTAAACGGACACTCGCCTCGACAAGAGCGTTTGAACAACTCGACAGATAT
CACGAGTTGATTGAAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGGAC
TTTTTATCCAGCTGTTTGCGTTGAGAACGATACTGAACTTTATGCCACTC
GACATTTCATCAATCTGGACACTGATTTTAAAGGCTGGCTTACAAACATC
TTCACAAAATACCCTATTGTACCAACCTTCATCCCCTACGTTCCCCCAGT
CAATCAACTTAAGGATGTTTTACGAATCGTCATTTTCGCTCTCCACTCTT
CCAAGACTGCACCCATCACAACAACAAATTGGGTGAATTACATTATCGAA
GCTTTTGATACCGTATGTACAACCGACAACATTTTATTCTACAGTAAGAA
ACAACTCCCCATCATGAGAGCAAACAATCCTCGTTTCAATAAAGTGCTGT
TCTTCGGGGGCTGGGGCTGTGACAAGTCTTTCTTGCTACAGCAGAAAGCC
AAACAGTTAAGTGGAATGAATAAATACAAAGACAAGATAATGTACGTAGT
GTTGAATACCTACTTTCATGATAAAGAAACTTTATTAACTTGGAGATTGA
AGAAAGAGTTGGAAGAACAACACGGAGTGATTGTTTATCAATCAACATTT
GACGATAGGAATGGGCTTAACAACTTGACCGATTTAATTCGAAAGAAACA
CATTACAGTATTATTCGTGGACGAATGTGATGTTTCATATTGGCGAAATG
CATTACAAACTGTCAAAGGTCAGCTCGACATCATTTGGATTGCGTCTAAC
GCAAACGGTCATCTTTCCTTACTCAATGCAAGAGAAGGAATCCAAACGTa
taatgatttcaaaaaatacgaGCTTTCAACTAACTTCCGCAACCCGAAGG
CTATAGTAGAGGAAGCTTTACA Run BLAST on NCBI protein sequence of TCONS_00039139-protein >TCONS_00039139-protein ID=TCONS_00039139-protein|Name=TCONS_00039139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
TFKQACIQKLTTMQVSQLKEALKVKNCKKGIEKLVKQNPPKDPIMRWYFE
FQPSEVGEKAEHSVFDHLYSLKDEEVLQDTVILNSLDFRTNVSNRMQQEF
DVLLFSWSRKLIIGIEIKRTLASTRAFEQLDRYHELIEERLSDQLGSGWT
FYPAVCVENDTELYATRHFINLDTDFKGWLTNIFTKYPIVPTFIPYVPPV
NQLKDVLRIVIFALHSSKTAPITTTNWVNYIIEAFDTVCTTDNILFYSKK
QLPIMRANNPRFNKVLFFGGWGCDKSFLLQQKAKQLSGMNKYKDKIMYVV
LNTYFHDKETLLTWRLKKELEEQHGVIVYQSTFDDRNGLNNLTDLIRKKH
ITVLFVDECDVSYWRNALQTVKGQLDIIWIASNANGHLSLLNAREGIQTY
NDFKKYELSTNFRNPKAIVEEAL Run BLAST on NCBI transcript from alignment at sc0002022:5219..7086+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039139 ID=TCONS_00039139|Name=TCONS_00039139|organism=Clytia hemisphaerica|type=transcript|length=1868bp|location=Sequence derived from alignment at sc0002022:5219..7086+ (Clytia hemisphaerica)
AACCTTCAAACAAGCTTGCATCCAAAAGCTGACAACGATGCAAGTATCTC
AACTCAAAGAAGCTTTAAAGGTACGTTTCTCACGtgtgtatatattttta
tatttaaatgATTAACTAGCTAATTAgctaatttttaatttcaagtaTAT
GCTACAGAGAAGACAATACTTGGATGTGGTCTCGTTTACGTCATAATTTG
GAATCGTCTCATTTTCGTAGTCTGTACCGTACAACAACTGTTActtactt
taattggattaaatttcgcgaacgaaaatattgagaaattttctggattt
actTTTTGAGTCAGAGTATGAAATACTTATCGAGATTTCACTTTGCTTAT
TCTCTCATGATTTTTCAGGTTAAGAACTGTAAGAAAGGAATCGAAAAGCT
GGTCAAACAAAATCCACCAAAGGATCCCATCATGAGATGGTATTTCGAAT
TCCAACCTTCCGAAGTCGGTGAAAAAGCAGAGCATTCCGTTTTTGACCAC
CTTTATTCCCTCAAAGATGAGGAAGTGCTCCAAGACACAGTTATTCTGAA
TTCTCTTGACTTTCGTACTAACGTGAGCAACCGAATGCAACAAGAATTTG
ACGTTCTTCTTTTCTCTTGGTCCAGAAAATTGATCATCGGTATAGAAATT
AAACGGACACTCGCCTCGACAAGAGCGTTTGAACAACTCGACAGATATCA
CGAGTTGATTGAAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGGACTT
TTTATCCAGCTGTTTGCGTTGAGAACGATACTGAACTTTATGCCACTCGA
CATTTCATCAATCTGGACACTGATTTTAAAGGCTGGCTTACAAACATCTT
CACAAAATACCCTATTGTACCAACCTTCATCCCCTACGTTCCCCCAGTCA
ATCAACTTAAGGATGTTTTACGAATCGTCATTTTCGCTCTCCACTCTTCC
AAGACTGCACCCATCACAACAACAAATTGGGTGAATTACATTATCGAAGC
TTTTGATACCGTATGTACAACCGACAACATTTTATTCTACAGTAAGAAAC
AACTCCCCATCATGAGAGCAAACAATCCTCGTTTCAATAAAGTGCTGTTC
TTCGGGGGCTGGGGCTGTGACAAGTCTTTCTTGCTACAGCAGAAAGCCAA
ACAGTTAAGTGGAATGAATAAATACAAAGACAAGATAATGTACGTAGTGT
TGAATACCTACTTTCATGATAAAGAAACTTTATTAACTTGGAGATTGAAG
AAAGAGTTGGAAGAACAACACGGAGTGATTGTTTATCAATCAACATTTGA
CGATAGGGTAAGTTACTTCTTCCTTGTGGTAAGGTTGCTGGATTAATAAA
CACGTGTTGAAGTGTATTTTATGTAAAAGTGATACAAAATCATGGTTGGT
GATTGATTGATTcaagttttgttgtttttcgcTTTTCTCCCGAAATATAA
ACCTTTGGATTCATCAACATTCCGTTATGTTAGCAAGAAAATAATGAATC
TGTTTATCACCCACTCAACTTTCATATAGACCAGATgaagaaaacttaaa
attctgaTTTCATCAAGTCTTAATTTTTCACTTAATTATTTTTCGTCTCT
ATTAGAATGGGCTTAACAACTTGACCGATTTAATTCGAAAGAAACACATT
ACAGTATTATTCGTGGACGAATGTGATGTTTCATATTGGCGAAATGCATT
ACAAACTGTCAAAGGTCAGCTCGACATCATTTGGATTGCGTCTAACGCAA
ACGGTCATCTTTCCTTACTCAATGCAAGAGAAGGAATCCAAACGTataat
gatttcaaaaaatacgaGCTTTCAACTAACTTCCGCAACCCGAAGGCTAT
AGTAGAGGAAGCTTTACA Coding sequence (CDS) from alignment at sc0002022:5219..7086+ >TCONS_00039139 ID=TCONS_00039139|Name=TCONS_00039139|organism=Clytia hemisphaerica|type=CDS|length=3807bp|location=Sequence derived from alignment at sc0002022:5219..7086+ (Clytia hemisphaerica)
ACCTTCAAACAAGCTTGCATCCAAAAGCTGACAACGATGCAAGTATCTCA
ACTCAAAGAAGCTTTAAAGGTTAAGAACTGTAAGAAAGGAATCGAAAAGC
TGGTCAAACAAAATCCACCAAAGGATCCCATCATGAGATGGTATTTCGAA
TTCCAACCTTCCGAAGTCGGTGAAAAAGCAGAGCATTCCGTTTTTGACCA
CCTTTATTCCCTCAAAGATGAGGAAGTGCTCCAAGACACAGTTATTCTGA
ATTCTCTTGACTTTCGTACTAACGTGAGCAACCGAATGCAACAAGAATTT
GACGTTCTTCTTTTCTCTTGGTCCAGAAAATTGATCATCGGTATAGAAAT
TAAACGGACACTCGCCTCGACAAGAGCGTTTGAACAACTCGACAGATATC
ACGAGTTGATTGAAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGGACT
TTTTATCCAGCTGTTTGCGTTGAGAACGATACTGAACTTTATGCCACTCG
ACATTTCATCAATCTGGACACTGATTTTAAAGGCTGGCTTACAAACATCT
TCACAAAATACCCTATTGTACCAACCTTCATCCCCTACGTTCCCCCAGTC
AATCAACTTAAGGATGTTTTACGAATCGTCATTTTCGCTCTCCACTCTTC
CAAGACTGCACCCATCACAACAACAAATTGGGTGAATTACATTATCGAAG
CTTTTGATACCGTATGTACAACCGACAACATTTTATTCTACAGTAAGAAA
CAACTCCCCATCATGAGAGCAAACAATCCTCGTTTCAATAAAGTGCTGTT
CTTCGGGGGCTGGGGCTGTGACAAGTCTTTCTTGCTACAGCAGAAAGCCA
AACAGTTAAGTGGAATGAATAAATACAAAGACAAGATAATGTACGTAGTG
TTGAATACCTACTTTCATGATAAAGAAACTTTATTAACTTGGAGATTGAA
GAAAGAGTTGGAAGAACAACACGGAGTGATTGTTTATCAATCAACATTTG
ACGATAGGAATGGGCTTAACAACTTGACCGATTTAATTCGAAAGAAACAC
ATTACAGTATTATTCGTGGACGAATGTGATGTTTCATATTGGCGAAATGC
ATTACAAACTGTCAAAGGTCAGCTCGACATCATTTGGATTGCGTCTAACG
CAAACGGTCATCTTTCCTTACTCAATGCAAGAGAAGGAATCCAAACGTat
aatgatttcaaaaaatacgaGCTTTCAACTAACTTCCGCAACCCGAAGGC
TATAGTAGAGGAAGCTTTAACCTTCAAACAAGCTTGCATCCAAAAGCTGA
CAACGATGCAAGTATCTCAACTCAAAGAAGCTTTAAAGGTTAAGAACTGT
AAGAAAGGAATCGAAAAGCTGGTCAAACAAAATCCACCAAAGGATCCCAT
CATGAGATGGTATTTCGAATTCCAACCTTCCGAAGTCGGTGAAAAAGCAG
AGCATTCCGTTTTTGACCACCTTTATTCCCTCAAAGATGAGGAAGTGCTC
CAAGACACAGTTATTCTGAATTCTCTTGACTTTCGTACTAACGTGAGCAA
CCGAATGCAACAAGAATTTGACGTTCTTCTTTTCTCTTGGTCCAGAAAAT
TGATCATCGGTATAGAAATTAAACGGACACTCGCCTCGACAAGAGCGTTT
GAACAACTCGACAGATATCACGAGTTGATTGAAGAAAGGTTGAGTGATCA
ACTCGGATCAGGTTGGACTTTTTATCCAGCTGTTTGCGTTGAGAACGATA
CTGAACTTTATGCCACTCGACATTTCATCAATCTGGACACTGATTTTAAA
GGCTGGCTTACAAACATCTTCACAAAATACCCTATTGTACCAACCTTCAT
CCCCTACGTTCCCCCAGTCAATCAACTTAAGGATGTTTTACGAATCGTCA
TTTTCGCTCTCCACTCTTCCAAGACTGCACCCATCACAACAACAAATTGG
GTGAATTACATTATCGAAGCTTTTGATACCGTATGTACAACCGACAACAT
TTTATTCTACAGTAAGAAACAACTCCCCATCATGAGAGCAAACAATCCTC
GTTTCAATAAAGTGCTGTTCTTCGGGGGCTGGGGCTGTGACAAGTCTTTC
TTGCTACAGCAGAAAGCCAAACAGTTAAGTGGAATGAATAAATACAAAGA
CAAGATAATGTACGTAGTGTTGAATACCTACTTTCATGATAAAGAAACTT
TATTAACTTGGAGATTGAAGAAAGAGTTGGAAGAACAACACGGAGTGATT
GTTTATCAATCAACATTTGACGATAGGAATGGGCTTAACAACTTGACCGA
TTTAATTCGAAAGAAACACATTACAGTATTATTCGTGGACGAATGTGATG
TTTCATATTGGCGAAATGCATTACAAACTGTCAAAGGTCAGCTCGACATC
ATTTGGATTGCGTCTAACGCAAACGGTCATCTTTCCTTACTCAATGCAAG
AGAAGGAATCCAAACGTataatgatttcaaaaaatacgaGCTTTCAACTA
ACTTCCGCAACCCGAAGGCTATAGTAGAGGAAGCTTTAACCTTCAAACAA
GCTTGCATCCAAAAGCTGACAACGATGCAAGTATCTCAACTCAAAGAAGC
TTTAAAGGTTAAGAACTGTAAGAAAGGAATCGAAAAGCTGGTCAAACAAA
ATCCACCAAAGGATCCCATCATGAGATGGTATTTCGAATTCCAACCTTCC
GAAGTCGGTGAAAAAGCAGAGCATTCCGTTTTTGACCACCTTTATTCCCT
CAAAGATGAGGAAGTGCTCCAAGACACAGTTATTCTGAATTCTCTTGACT
TTCGTACTAACGTGAGCAACCGAATGCAACAAGAATTTGACGTTCTTCTT
TTCTCTTGGTCCAGAAAATTGATCATCGGTATAGAAATTAAACGGACACT
CGCCTCGACAAGAGCGTTTGAACAACTCGACAGATATCACGAGTTGATTG
AAGAAAGGTTGAGTGATCAACTCGGATCAGGTTGGACTTTTTATCCAGCT
GTTTGCGTTGAGAACGATACTGAACTTTATGCCACTCGACATTTCATCAA
TCTGGACACTGATTTTAAAGGCTGGCTTACAAACATCTTCACAAAATACC
CTATTGTACCAACCTTCATCCCCTACGTTCCCCCAGTCAATCAACTTAAG
GATGTTTTACGAATCGTCATTTTCGCTCTCCACTCTTCCAAGACTGCACC
CATCACAACAACAAATTGGGTGAATTACATTATCGAAGCTTTTGATACCG
TATGTACAACCGACAACATTTTATTCTACAGTAAGAAACAACTCCCCATC
ATGAGAGCAAACAATCCTCGTTTCAATAAAGTGCTGTTCTTCGGGGGCTG
GGGCTGTGACAAGTCTTTCTTGCTACAGCAGAAAGCCAAACAGTTAAGTG
GAATGAATAAATACAAAGACAAGATAATGTACGTAGTGTTGAATACCTAC
TTTCATGATAAAGAAACTTTATTAACTTGGAGATTGAAGAAAGAGTTGGA
AGAACAACACGGAGTGATTGTTTATCAATCAACATTTGACGATAGGAATG
GGCTTAACAACTTGACCGATTTAATTCGAAAGAAACACATTACAGTATTA
TTCGTGGACGAATGTGATGTTTCATATTGGCGAAATGCATTACAAACTGT
CAAAGGTCAGCTCGACATCATTTGGATTGCGTCTAACGCAAACGGTCATC
TTTCCTTACTCAATGCAAGAGAAGGAATCCAAACGTataatgatttcaaa
aaatacgaGCTTTCAACTAACTTCCGCAACCCGAAGGCTATAGTAGAGGA
AGCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039139-exon-sc0002022-1491911889:5219..5288 | TCONS_00039139-exon-sc0002022-1491911889:5219..5288 | Clytia hemisphaerica | exon |
| TCONS_00039139-exon-sc0002022-1510915933:5219..5288 | TCONS_00039139-exon-sc0002022-1510915933:5219..5288 | Clytia hemisphaerica | exon |
| TCONS_00039139-exon-sc0002022-1575043694:5219..5288 | TCONS_00039139-exon-sc0002022-1575043694:5219..5288 | Clytia hemisphaerica | exon |
| TCONS_00039139-exon-sc0002022-1491911889:5587..6525 | TCONS_00039139-exon-sc0002022-1491911889:5587..6525 | Clytia hemisphaerica | exon |
| TCONS_00039139-exon-sc0002022-1510915933:5587..6525 | TCONS_00039139-exon-sc0002022-1510915933:5587..6525 | Clytia hemisphaerica | exon |
| TCONS_00039139-exon-sc0002022-1575043694:5587..6525 | TCONS_00039139-exon-sc0002022-1575043694:5587..6525 | Clytia hemisphaerica | exon |
| TCONS_00039139-exon-sc0002022-1491911889:6824..7086 | TCONS_00039139-exon-sc0002022-1491911889:6824..7086 | Clytia hemisphaerica | exon |
| TCONS_00039139-exon-sc0002022-1510915933:6824..7086 | TCONS_00039139-exon-sc0002022-1510915933:6824..7086 | Clytia hemisphaerica | exon |
| TCONS_00039139-exon-sc0002022-1575043694:6824..7086 | TCONS_00039139-exon-sc0002022-1575043694:6824..7086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002022 | supercontig | sc0002022:5219..7086 + |
Blast
The following BLAST results are available for this feature:
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