TCONS_00039128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039128
Unique NameTCONS_00039128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039128 ID=TCONS_00039128|Name=TCONS_00039128|organism=Clytia hemisphaerica|type=transcript|length=1440bp
aataaacgCAGAGGAAGTAATGGTTCtaattggaataaaaatGTAAGATT
TATTGACCGAAAAAAAGACCGTAATCGTAGGAATAAAGATTACCtaaagc
aaacaaagaaaaagataAATGATTGGGGTGTTTAGTGTAAAGCAACTGTT
GGAGTTCTTCATATATACGAAGAGACGCCTCATTATTTTGgcAATAATCC
GCTGATGTCGAACTGTCGAACGATCAGAgagtaaaagaaattttaaaaga
atattgTGAATTTACAGATGAGATGGAAGAAAAGAAACCTGCTAATACAT
TTAATGCATCTTCGGAAAAAAGAAAAGATTGCACTGATGTAGATTTTCCG
AAAAAGGCAAAATTGACTGAAGAAGAAAAGACAAATGACACTGTTCTATC
CGAGAATTTTGAGAGAGGTGTGTGGAACCGATACCAGAAGTCCCTTATTC
TTGTGGATGTCACCGTATTGCTGCTTTAAATATAGAATTCGAAAGGCTGC
TGTCATGGACGGAGAATCcaaatgaatttaaaagaaagtttatgAGATAT
TGgaataaaagttttcaaaatgtagtTTTACAACTGAACGAAGGATGCTG
CAAGAAATCTACATCGTCTATATCTCACCTTTTCAGACCAGACATTattg
CTATTTTGGAAAACCTGATCAAAGAAATGCTACCAATGGCTGAACCTGAA
TTGATACGTAGCTTTATCCTACCCGAGATGATTGTTCGAACGATTTCACA
GGAATGTAAATGTGCTGTTTTGTCTGTACGGAAAGTTTTACTGGAGAGAG
TTCTAATAATTACAATGCTTCTATATAATACTTATATTATTTCATAGGTT
GCTTAACTCTTATTCGATATTGTAAGCAAGTATAATATTATAAAATATTG
TTATAAATAATGAATTTCTTATATTCTTGTTATAAGTAAAGAAATGGATT
TTACGAATTATGATAAAGTCTTTGTTTTAGTACCTAGAGGTTACACTTGG
GTCCATCTGTTACTCGTTTTAATCCAGGGGATAAGAATTTGAAGACCAAG
TATATCCAGGGGGTTGGTGTTAAGAAAAACTCAAGTGCCAAAATAAACGC
GGAATGGGATGGGAAATTTCCAAAGGAGTAAATAGAAACTCAGCTGTTAA
AAATAGTAATGATTAGGAAATGATATAAAAACAAGCTGTACGGAGCAAAA
GAATAGCGGCTTTGCTTGGTATACTACAGAAATTatttagtcaaaaaaaa
atgaataaggGGAGGTGGAGTCTTAAGAAAGTCGAGGGGGTTGCAACCCC
TCCTCTCACCAACACCGGGTATACCGGGTTTGTATATTGGCCCTATATAT
GGGTTCATTCTTTACTATAGGGGATAAATTTGCCTCGAAATGTTCAATCT
CGGAAAGGAGTCGAAATACCACACCTTATCCGTCTAAAAT
Run BLAST on NCBI

transcript from alignment at sc0002020:16498..22083-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039128 ID=TCONS_00039128|Name=TCONS_00039128|organism=Clytia hemisphaerica|type=transcript|length=5586bp|location=Sequence derived from alignment at sc0002020:16498..22083- (Clytia hemisphaerica)
AATAAACGCAGAGGAAGTAATGGTTCTAATTGGAATAAAAATGTGAGTTT
AATTTATACAAATTGCATCAATATTTTTATCAAAAATGAAGACATGTAAG
CGCGTGCTATGCTTAAGTTTTCGGTAGACGGTATCTACTCGAACCACAAC
TTGAATTAGAAACCTTGTTGTGTGTCTTTAAAACTGGTATGGACAAATAG
ACCTTATTCAATGATGTTCAAATTGCTTTCCAGGTAAGATTTATTGACCG
AAAAAAAGACCGTAATCGTAGGAATAAAGATTACCTAAAGCAAACAAAGA
AAAAGGTATTAGTTTTGTTAAATTTTGGTTATTTGTATTTTCCTTTTTAG
CTATAATGCAAGAAATAATACAATGATATCTAAATACTCGAATGTTACCG
TCTCTATGTGTTTTCGTGTATTTTATTGGTTTTACGGAGAAAAGAAAAAA
ATAGCTAACAACAACAACAACAACAACAACAGAAAGTCGGTAACTAAGAA
TTAAGAACCTAGCTTTAAAAAATTGTCCATTGTTTTTTTTTACAGATAAA
TGATTGGGGTGTTTAGTGTAAAGCAACTGTTGGAGTTCTTCATATATACG
AAGAGACGCCTCATTATTTTGGTAAAATAATAATCTTTTCTCTTGAATCT
TATAGACACAGATGTCATAATGCAACTGTGTTGATAAATCATAAGTATTA
GTTTAATGATAAAGTTTTCGTGAACGACAAGAGGCTTATAATGTTTATTT
TTATTTAGGCAATAATCCGCTGATGTCGAACTGTCGAACGATCAGAGAGT
AAAAGAAATTTTAAAAGAATATTGTGAATTTACAGGTATCTCTTGATTTA
TATAAGTTAGAATGCGCATTTATGTTTATCCTTTACACAAATGCTTTAAA
TACCAATCAAGGAAAAACAACAACATTTTAGGAGATTGATGTAGATAGAG
AATACGAAAAAAAAAAAGAATTTTCCGTTTCTAGATGAGATGGAAGAAAA
GAAACCTGCTAATACATTTAATGCATCTTCGGAAAAAAGAAAAGGTCAGG
ATATGATTTTTTAGAATCACGTTTCCATTATGGTACATGATATCTATCCA
TTGACTCCTATTATCTACTTGTCATTGTTCGTTATATAATTGATAAATTT
GATGTGTCGTTGAATTACATTTTTATACTATTTTTTAGATTGCACTGATG
TAGATTTTCCGAAAAAGGCAAAATTGACTGAAGAAGAAAAGACAAATGAC
ACTGTTCTATCCGAGAATTTTGAGAGAGGTAGAACTGTTGCGAAAAGGCC
TTGGAAATATGGCACATAGTACTCGTCTCTATTGAAACTAACTTTGCTTG
GAAACAATTGAGTCTTGTGCTGCTACTACATGTTTTTATAAACAATGAAA
AATTCAAAATCGGGCTCAGATATGCTTACTTCTAGATCTATCTAATAAGG
TTCAATAAATGCTTCCAGTATGCTTATCACAAAAAATATAATTGTTTTTT
ATATTCAAAATTCGAATGTTTATTGTATGTATACTCAAATTCAAAAGTTT
CAAATTTATTATATTCGAATATTTGCTAAAATATTTAAATGGATGGGCAA
GATCGAGCCGCTTTGTCTTTGTTTAGTGAAAACATACAGGCCAAAATACA
GTGTTGTAAACAATTTTTGAAGGTTTGGTATTATGCTTAGCATATACTTT
AATATTTTCCCTGAGCCAAAACATTTACTACCTCTTTTAGCACTCTTAGT
TAAAATTTGGAACTGAAAAAACTCCATCCTGATAATCTCCTGCTGATAAA
ACTATGAAATGAAATTATGATCGCTGGATAGAATGAGCATTTCGGAAAAT
GTTTACACTGAATATGAATTAGATTTTTTAAACCGCTGCATTATATCTTT
TTCCTTATTCAGAAATAGTTTGCTGCACAAAATTTTGCTTGAAACCTAAA
TCTTCTAGCGAGGTATACATTTGCAGCAAATGTAAATCTCCCTATCATCG
CAGGTGTGTGGAACCGATACCAGAAGTCCCTTATTCTTGTGGATGTCACC
GTATTGCTGCTTTAAATATAGAATTCGAAAGGTGATTCTTTTGTTGGGAA
ATCTTTAATCTGTAAATTGTGAAAACTACTTGCAACACAAACTCTTACAA
CCCCATCCTGATAATCTCCTGCTTATAAAACTGTAATTAAAAATATGATT
GCTGGCTGGATGAAATGAACTTTTCGGAGAATTTTTAATCTTTTAATTGA
ATTTTCAGGCTGCTGTCATGGACGGAGAATCCAAATGAATTTAAAAGAAA
GTTTATGAGATATTGGAATAAAAGTTTTCAAAATGTAGTAAGTTACTGAT
TTCTATTTTGTTAGTGAGCTTACCAGAGAAAAATTGAGTACCAGCTATTT
TTATTCCTCGTGTAACAATGAAATAAGTTTGTATTTGAACCATTAAGTGA
AGGAGATTTAAGTTTTGTACATGTCAAACTTGTGCCGTTTCACTTACATT
CTGATTCTCCATTATTTCCATGGTTATACTTTTTTCTCATTTTCAGGTTT
TACAACTGAACGAAGGATGCTGCAAGAAATCTACATCGTCTATATCTCAC
CTTTTCAGACCAGACATTGTAAGTATAACCTATCCTATACTCATAGCTGG
CACCCACTCCCCAACTTAAATTGGTTGAGGTAAATCTCAAATTTGCCAAA
AAAGTGGGTGGGGGCTGTTTCACTTTTAAGTTCAGTGGGGCCTAAAAGAG
TGGGTTTAGTAAAGATAGTATTTATTTCATTATGATCAGGATTTTAGGCC
GAAATTATTCACCTTCAAAGTTGTAACACGGCCCCTGAAAAATGTCGGAG
GCACGACCTCTTATTTATTTCCCAAATATATTTCCTGGAAAATTTTACCC
AAAATGCAATTTCTTTATCCATTGCCCAATTATGACGGACAACAACGTCT
AATGATTTTAATATATATTACTTTGAATTCTGACCTAAAATCATTATTCT
TAGTTTTTGGTGATTATTTTAAGCTGGAAAACAGTGCATGCTTCAGCATT
GAGGAAAACATCTCCTTTTTTCACTAAAAAATAATTTTGTGTGCAAGGCA
GCGTGTTTTCAAATAGCCTCTACGCAACAATGCAAAATAATAGATAACCA
ACTTGCATTGATCCTCAAAACAAATTTTGAAGCAAGAGCCTTCCGGAGGT
AGTTAGTTATCTATTATTTCTACATCGTTTCTTTACGTGAAGTGCAAATT
CTTATTGTCACTTCACACGTGGAAAAGAAAGCAAGTCAATTCTCTTAAGA
TATTTTTTTGATAAAGTTTAATTATTTTTAGATTTTTAATGACACATGTG
TGAATGTTGAAATGTATGTGATTAACCTTTAACCTTTAGACCTTGTTTCC
AGTCGTTCTTTTTAGATTGCTATTTTGGAAAACCTGATCAAAGAAATGCT
ACCAATGGCTGAACCTGAATTGATACGTAGCTTTATCCTACCCGAGGTAA
AAAATTGTACACCTAAAACAACTTTGTATATCCAGTTTAATAAATTTGAA
GGAAGCAGAATGCTGGGTAGCTAAATCACCCATATTCCCAAGCAATAAAT
GCATATCATTAAGCTAGGAAAATAGCCTGTTTTTAACCCAATAGGTCGAA
CTTTTTACACATTAGTGGATAACAAGCAGATATTCGATATGTCAAAGTTG
GTTAATAAATCCAATAACCAACAAACATAAAACCTTTTGAATATGTTTTA
TTCTATGCAAGGAAAAAACAAAAGAAAAAATCGAAACATTTACAGAATAA
AAAGTGCTCACAAAATCGAACGTTCGAAAAATCTTTCTCTTTATCAACTT
TGTAATTACTTTAAATCATGCAAATGTAAAGTAATATAACAATATATCTA
ATTTCTTTTCCAGCAAGAGTAAAAAACCATGAAATTTCGAAAATTTGGAG
TAAAAGAATTTGCCGTTGAATAATAGCCATGAAATATCGGTAATTATTCA
ACGGCTGTAATAATACAATTTAAAACAATATTATAATATAATCTGATTGC
TTACGGAAGCCCTGAGCGGCCACAACGACACCAATATTCCAAACTCTCAC
AACAATACTTAAAACGTTTACAATAACATCCAAATTCTCATAACAATATC
AAAATTTTGACAACAATATGAAAACTCAGAAAGAATCTAAAGCACTTTCT
CTCGCAGTGATGTTTTTACGTCTTGTTGACGATGAAAAATCTTCCATTAG
GACAGTGCCTTAAGTTTCTAAACACTAGTCTAAATGTAGCTAAATATTTC
ACGTGGTGAGAGATTTGTTACATTAAAATTACAAGAGAGTCTGATAGTTG
TCCCTTTCANAGAAAGATAGACTTAAATTTTGATGGGTCATTTATTAAAT
TCAATACTCTAGTCTAAATGTAGCTAAATATTTCACGTGGTGAGAGATTT
GTTACATTAAAATTACAAGAGAGTCTGATAGTTGTCCCTTTATAATTGAT
AGGAAAAAAGTTATCCATTAAGTATAGAGTTGGTAAGCATCTGGTGTACA
AAAGGCTTCAATTTCTGGTGTACAAAAGGTTCCGATTTCCAGAAAAACCA
TAAGTACCATAAGCTTTATGGACGGTATGGACCAGCTTCTAAGATCGTAT
AGAAAATACTTGCAAATAAGGTGACTGTGGTGCAGTCTCTTCCCCACATT
CTATGCAGTACTTTTCATCGTGGATTTCTCCACGGCACTCCATGACGACT
ATTACCAGACTATCTGTAATTTTATTTTAACACAAGGTAGCATGTGTGTA
AATTGTTATCGTTGTGCTCACTCTTCTGTAATTGCTAGATTGCTCTAATT
ATCAATCGCTTTTGTTCTTTTAGATGATTGTTCGAACGATTTCACAGGAA
TGTAAATGTGCTGTTTTGTCTGTACGGAAAGTTTTACTGGAGAGAGTTCT
AATAATTACAATGCTTCTATATAATACTTATATTATTTCATAGGTTGCTT
AACTCTTATTCGATATTGTAAGCAAGTATAATATTATAAAATATTGTTAT
AAATAATGAATTTCTTATATTCTTGTTATAAGTAAAGAAATGGATTTTAC
GAATTATGATAAAGTCTTTGTTTTAGTACCTAGAGGTTACACTTGGGTCC
ATCTGTTACTCGTTTTAATCCAGGGGATAAGAATTTGAAGACCAAGTATA
TCCAGGGGGTTGGTGTTAAGAAAAACTCAAGTGCCAAAATAAACGCGGAA
TGGGATGGGAAATTTCCAAAGGAGTAAATAGAAACTCAGCTGTTAAAAAT
AGTAATGATTAGGAAATGATATAAAAACAAGCTGTACGGAGCAAAAGAAT
AGCGGCTTTGCTTGGTATACTACAGAAATTATTTAGTCAAAAAAAAATGA
ATAAGGGGAGGTGGAGTCTTAAGAAAGTCGAGGGGGTTGCAACCCCTCCT
CTCACCAACACCGGGTATACCGGGTTTGTATATTGGCCCTATATATGGGT
TCATTCTTTACTATAGGGGATAAATTTGCCTCGAAATGTTCAATCTCGGA
AAGGAGTCGAAATACCACACCTTATCCGTCTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023566XLOC_023566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039128-exon-sc0002020-1575043694:22042..22083TCONS_00039128-exon-sc0002020-1575043694:22042..22083Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:21779..21850TCONS_00039128-exon-sc0002020-1575043694:21779..21850Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:21463..21538TCONS_00039128-exon-sc0002020-1575043694:21463..21538Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:21249..21325TCONS_00039128-exon-sc0002020-1575043694:21249..21325Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:21040..21099TCONS_00039128-exon-sc0002020-1575043694:21040..21099Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:20806..20895TCONS_00039128-exon-sc0002020-1575043694:20806..20895Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:20003..20080TCONS_00039128-exon-sc0002020-1575043694:20003..20080Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:19747..19825TCONS_00039128-exon-sc0002020-1575043694:19747..19825Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:19466..19537TCONS_00039128-exon-sc0002020-1575043694:19466..19537Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:18588..18668TCONS_00039128-exon-sc0002020-1575043694:18588..18668Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1575043694:16498..17210TCONS_00039128-exon-sc0002020-1575043694:16498..17210Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:22042..22083TCONS_00039128-exon-sc0002020-1510915933:22042..22083Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:21779..21850TCONS_00039128-exon-sc0002020-1510915933:21779..21850Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:21463..21538TCONS_00039128-exon-sc0002020-1510915933:21463..21538Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:21249..21325TCONS_00039128-exon-sc0002020-1510915933:21249..21325Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:21040..21099TCONS_00039128-exon-sc0002020-1510915933:21040..21099Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:20806..20895TCONS_00039128-exon-sc0002020-1510915933:20806..20895Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:20003..20080TCONS_00039128-exon-sc0002020-1510915933:20003..20080Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:19747..19825TCONS_00039128-exon-sc0002020-1510915933:19747..19825Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:19466..19537TCONS_00039128-exon-sc0002020-1510915933:19466..19537Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:18588..18668TCONS_00039128-exon-sc0002020-1510915933:18588..18668Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1510915933:16498..17210TCONS_00039128-exon-sc0002020-1510915933:16498..17210Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:22042..22083TCONS_00039128-exon-sc0002020-1491911889:22042..22083Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:21779..21850TCONS_00039128-exon-sc0002020-1491911889:21779..21850Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:21463..21538TCONS_00039128-exon-sc0002020-1491911889:21463..21538Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:21249..21325TCONS_00039128-exon-sc0002020-1491911889:21249..21325Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:21040..21099TCONS_00039128-exon-sc0002020-1491911889:21040..21099Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:20806..20895TCONS_00039128-exon-sc0002020-1491911889:20806..20895Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:20003..20080TCONS_00039128-exon-sc0002020-1491911889:20003..20080Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:19747..19825TCONS_00039128-exon-sc0002020-1491911889:19747..19825Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:19466..19537TCONS_00039128-exon-sc0002020-1491911889:19466..19537Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:18588..18668TCONS_00039128-exon-sc0002020-1491911889:18588..18668Clytia hemisphaericaexon
TCONS_00039128-exon-sc0002020-1491911889:16498..17210TCONS_00039128-exon-sc0002020-1491911889:16498..17210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002020supercontigsc0002020:16498..22083 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	9.1877e-09	0.350734	0.852108	1.19836	1.6541	0	0.741009	1.50981	0.797887	1.24028	0.822979	0.806322	1.40451	0	0	1.17788e-08	0	1.63522	0	0.530162	1.81458	6.35058	4.05003	0	0.0324743
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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