TCONS_00039120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039120
Unique NameTCONS_00039120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2154

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039120 ID=TCONS_00039120|Name=TCONS_00039120|organism=Clytia hemisphaerica|type=transcript|length=2154bp
ctcaaaatggtaggtaaagtaGTGCGTGATTAAACCAGTGGCTGTTTTCA
TGGAATTTTACTGTTGCACTAGGTTTTTGATTTATCATTTATTGGGTTAG
CTTAGTTGAATGATAGAATGTTCCATTAGTTTAACGTCACCACAACATGT
TTCTCATtagcttttgttttgatttgagaggcaCGCGCTTTAGACAGTTA
GTTTTAGGTAGTAAATTCCTTTGATCTTGCCattactttcttttttgtta
aacagggcaaaattgattttggtgctCTTTTTTACGCTAGTTTCCTTAAC
TGTCAAGCTCTTACACTCATAAAACTGTTTAACTTATTCGCATATCTTGT
CTTTATGAGTGAATCTTTTTTAATCTCcaacagtcagggaaatccctcaa
ttgcggtataaactgcaattgcggtagttttcaATCGTGATTAGCCTACA
AGGGCTTATAACAgctacatatagtgctggtcgacaaagataaatAAACA
TCGACTGTAAAAAATCGTACAAGAAGATGGTagcttttctttatcaaaag
aatctgatctacggaaaaaatattttgtctgtgcgtgcgttaaaaagata
tgataaaTTACtgtatgtacaaaaattgcctgttttctccttgaatcttg
aattctgtttcttgagtatactgcaattgcggtacatgaaaaatttaaaa
gtgacgtttatactgcaattgcagtaagaaattactaccgcaattgtggg
atttccctgactgtccAAGTAGgagaaaacaattttatataagaaaaatt
tttctaTTGCCAACACGgatcaaattttttgtaaaatctcttcaACCCAT
CATCGTTATGAAACACCAGCAATTGGGTTCATTGGTGtttcttttggttt
ttttatGACTTTCCCTTGTTCCTTTTTCGATTAGTAGAAATGCAAAAATC
AATGTATATACTCATCTTATAGACTGATAGATGGCCCTATCTCTCTGTCA
cctttctattttctgactcCCCACAACCCTCACATTTAGCAATTAAAGAA
ATTCCAATTGATATTTTCTGTATTATACAATGAAAAAGGGAGACAGAATT
AGTGAGGCGGAGAGGGTGACAGAGATAGGGCCATCTatggaaatctttaa
aaattaaaatttatagaTTTCTTTGCCTTGTATACTTTAAAATACATGTG
GTGTGGCCAGGATTAGGCAATTCCGCAAGAGCccattttttctgtgtttt
gctATGAAACAATTCTTTATTTATGTCTTTTGAAATTTACTGATTCCAAT
TTTTCAGAGTATTTGGTCGATATCATTGAGGTCTCCAAAAGGATACCTAC
TTAAGCAGATCAAATCAAAATCTAAATGAAAAATCAACCAGAAATTAGTA
CCCCtaaaatagttgttttggagaacgtgacggcctattgaataaaaaat
atagcAGACATAGTCATAtagaaaatttgttcatttttttaatcatttgt
tTCAACTTTTATCTGCTTTTATCTCAACTTTCCTGCAGGTTGATTCTTCT
CTCAGTTTGATGTATGTCTTTTTGTTGTAGCAATATTGAGCTTATTGTCG
CAATACAGTTTAAAGGGAACTCTAAATAATTCTAAGGAATATCACCTAAA
ACTACAAATTTCTACATAAGACATGTTATCACGTTTTTTTTCAGCCTTCA
ACTTCAATGTctatttcaagaacatttttggtATAAATTAGAATAAGCCA
TGGAACAGTCATCAGCAGATGATGATCAAGATTTTGTCTCAGCTGAAAAC
CAACCCAAAGacTTCAAAGATGAAATTAAAGCCTGTGAAATCTTAcagat
ttttatgaaatgtaGAGAAGCAATTGTTCTTGAACAAGACTTCCAAGCTT
TGATCAAACAAAGCTTATTCGATCCGAACTTCCCATCTACAGGAACTCCA
TCTTTACTCATtgcagaaaatgaaattttgtcaCTATCGACTTACTCAAA
ATGCACTGATGGTATCTTTTATGTTATGCCATTAATATTTGAAGTTTGTG
GGGAAAATCAGCTATATCTAAGGTAAATAATTTACTATCagattttcttt
tgtaaatattgttcatggtttcagccccctGGATTTCTTAAGGGCCCCTA
GGCC
Run BLAST on NCBI

transcript from alignment at sc0002020:8878..12017+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039120 ID=TCONS_00039120|Name=TCONS_00039120|organism=Clytia hemisphaerica|type=transcript|length=3140bp|location=Sequence derived from alignment at sc0002020:8878..12017+ (Clytia hemisphaerica)
ctcaaaatggtaggtaaagtaGTGCGTGATTAAACCAGTGGCTGTTTTCA
TGGAATTTTACTGTTGCACTAGGTTTTTGATTTATCATTTATTGGGTTAG
CTTAGTTGAATGATAGAATGTTCCATTAGTTTAACGTCACCACAACATGT
TTCTCATtagcttttgttttgatttgagaggcaCGCGCTTTAGACAGTTA
GTTTTAGGTAGTAAATTCCTTTGATCTTGCCattactttcttttttgtta
aacagggcaaaattgattttggtgctCTTTTTTACGCTAGTTTCCTTAAC
TGTCAAGCTCTTACACTCATAAAACTGTTTAACTTATTCGCATATCTTGT
CTTTATGAGTGAATCTTTTTTAATCTCcaacagtcagggaaatccctcaa
ttgcggtataaactgcaattgcggtagttttcaATCGTGATTAGCCTACA
AGGGCTTATAACAgctacatatagtgctggtcgacaaagataaatAAACA
TCGACTGTAAAAAATCGTACAAGAAGATGGTagcttttctttatcaaaag
aatctgatctacggaaaaaatattttgtctgtgcgtgcgttaaaaagata
tgataaaTTACtgtatgtacaaaaattgcctgttttctccttgaatcttg
aattctgtttcttgagtatactgcaattgcggtacatgaaaaatttaaaa
gtgacgtttatactgcaattgcagtaagaaattactaccgcaattgtggg
atttccctgactgtccAAGTAGgagaaaacaattttatataagaaaaatt
tttctaTTGCCAACACGgatcaaattttttgtaaaatctcttcaACCCAT
CATCGTTATGAAACACCAGCAATTGGGTTCATTGGTGtttcttttggttt
ttttatGACTTTCCCTTGTTCCTTTTTCGATTAGTAGAAATGCAAAAATC
AATGTATATACTCATCTTATAGACTGATAGATGGCCCTATCTCTCTGTCA
cctttctattttctgactcCCCACAACCCTCACATTTAGCAATTAAAGAA
ATTCCAATTGATATTTTCTGTATTATACAATGAAAAAGGGAGACAGAATT
AGTGAGGCGGAGAGGGTGACAGAGATAGGGCCATCTatggaaatctttaa
aaattaaaatttatagaTTTCTTTGCCTTGTATACTTTAAAATACATGTG
GTGTGGCCAGGATTAGGCAATTCCGCAAGAGCccattttttctgtgtttt
gctATGAAACAATTCTTTATTTATGTCTTTTGAAATTTACTGATTCCAAT
TTTTCAGAGTATTTGGTCGATATCATTGAGGTCTCCAAAAGGATACCTAC
TTAAGCAGATCAAATCAAAATCTAAATGAAAAATCAACCAGAAATTAGTA
CCCCtaaaatagttgttttggagaacgtgacggcctattgaataaaaaat
atagcAGACATAGTCATAtagaaaatttgttcatttttttaatcatttgt
tTCAACTTTTATCTGCTTTTATCTCAACTTTCCTGCAGGTTGATTCTTCT
CTCAGTTTGATGTATGTCTTTTTGTTGTAGCAATATTGAGCTTATTGTCG
CAATACAGTTTAAAGGGAACTCTAAATAATTCTAAGGAATATCACCTAAA
ACTACAAATTTCTACATAAGACATGTTATCACGTTTTTTTTCAGCCTTCA
ACTTCAATGTctatttcaagaacatttttggtATAAATTAGAATAAGCCA
TGGAACAGTCATCAGCAGGTcagttttttattaaatttctgTAACATTTA
GTCCAAAAGTCTGCTCTCCGTACTGCTCCGTAGGCTGGAGAAGATATTTT
GTGTTCTTGTGTttgcaaattaaaatttctAGTAACTTTTATTACTGACT
TACCGGACatcagacagacagacagaatttttatctaaaaataacACAAG
CAAAAATTATTTGTGATCTTAGCCTTAATAATTATCCAATGGGAAACAAT
GACTGCATGTTTCACAAGATAAAAAAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTATCTTGACACTATCTTGACACTACCTTGACACTACAA
ACTGACAGTTGAACATTATTAAGTTATTATAACCTTTGGCATGCAATTAA
AttccaaaattcgaaatttctaaTACATGTTTTCCAATACATACTCTAGA
TGATGATCAAGATTTTGTCTCAGCTGAAAACCAACCCAAAGGTACACAGT
TAATAtctcaaaaactttcaatagaTTCTATGCAATTTTAGATTTGATCA
GATTTGATAAATTTCTAGAattgatcaatttttttatcttttttagacTT
CAAAGATGAAATTAAAGCCTGTGAAATCTTAcagatttttatgaaatgta
GAGAAGCAATTGTTCTTGAACAAGACTTCCAAGCTTTGATCAAACAAAGC
TTATTCGATCCGAACTTCCCATCTACAGGAACTCCATCTTTACTCATtgc
agaaaatgaaattttgtcaCTATCGACTTACTCAAAATGCACTGATGGTA
TCTTTTATGTTATGCCATTAATATTTGAAGTTTGTGGGGAAAATCAGCTA
TATCTAAGGTAAATAATTTACTATCagattttcttttgtaaatattgttc
atggtttcagccccctGGATTTCTTAAGGGCCCCTAGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023564XLOC_023564Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039120-exon-sc0002020-1491911889:8878..10645TCONS_00039120-exon-sc0002020-1491911889:8878..10645Clytia hemisphaericaexon
TCONS_00039120-exon-sc0002020-1510915933:8878..10645TCONS_00039120-exon-sc0002020-1510915933:8878..10645Clytia hemisphaericaexon
TCONS_00039120-exon-sc0002020-1575043694:8878..10645TCONS_00039120-exon-sc0002020-1575043694:8878..10645Clytia hemisphaericaexon
TCONS_00039120-exon-sc0002020-1491911889:11527..11568TCONS_00039120-exon-sc0002020-1491911889:11527..11568Clytia hemisphaericaexon
TCONS_00039120-exon-sc0002020-1510915933:11527..11568TCONS_00039120-exon-sc0002020-1510915933:11527..11568Clytia hemisphaericaexon
TCONS_00039120-exon-sc0002020-1575043694:11527..11568TCONS_00039120-exon-sc0002020-1575043694:11527..11568Clytia hemisphaericaexon
TCONS_00039120-exon-sc0002020-1491911889:11674..12017TCONS_00039120-exon-sc0002020-1491911889:11674..12017Clytia hemisphaericaexon
TCONS_00039120-exon-sc0002020-1510915933:11674..12017TCONS_00039120-exon-sc0002020-1510915933:11674..12017Clytia hemisphaericaexon
TCONS_00039120-exon-sc0002020-1575043694:11674..12017TCONS_00039120-exon-sc0002020-1575043694:11674..12017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002020supercontigsc0002020:8878..12017 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.10495	0	1.09373e-07	3.02157e-07	0	0	0.0464015	1.55023	0	0	0.973478	0	0	0	0	0	0	0	0	0	7.02381e-09	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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