|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039118 ID=TCONS_00039118|Name=TCONS_00039118|organism=Clytia hemisphaerica|type=transcript|length=703bp
TCATtgctttctatttattttcattacgtaatgtatctcaaaatggtagg
taaagtaGTGCGTGATTAAACCAGTGGCTGTTTTCATGGAATTTTACTGT
TGCACTAGGTTTTTGATTTATCATTTATTGGGTTAGCTTAGTTGAATGAT
AGAATGTTCCATTAGTTTAACGTCACCACAACATGTTTCTCATtagcttt
tgttttgatttgagaggcaCGCGCTTTAGACAGTTAGTTTTAGCCTTCAA
CTTCAATGTctatttcaagaacatttttggtATAAATTAGAATAAGCCAT
GGAACAGTCATCAGCAGATGATGATCAAGATTTTGTCTCAGCTGAAAACC
AACCCAAAGacTTCAAAGATGAAATTAAAGCCTGTGAAATCTTAcagatt
tttatgaaatgtaGAGAAGCAATTGTTCTTGAACAAGACTTCCAAGCTTT
GATCAAACAAAGCTTATTCGATCCGAACTTCCCATCTACAGGAACTCCAT
CTTTACTCATtgcagaaaatgaaattttgtcaCTATCGACTTACTCAAAA
TGCACTGATGGTATCTTTTATGTTATGCCATTAATATTTGAAGTTTGTGG
GGAAAATCAGCTATATCTAAGGTAAATAATTTACTATCagattttctttt
gtaaatattgttcatggtttcagccccctGGATTTCTTAAGGGCCCCTAG
GCC Run BLAST on NCBI protein sequence of TCONS_00039118-protein >TCONS_00039118-protein ID=TCONS_00039118-protein|Name=TCONS_00039118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MEQSSADDDQDFVSAENQPKDFKDEIKACEILQIFMKCREAIVLEQDFQA
LIKQSLFDPNFPSTGTPSLLIAENEILSLSTYSKCTDGIFYVMPLIFEVC
GENQLYLR Run BLAST on NCBI transcript from alignment at sc0002020:8842..12017+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039118 ID=TCONS_00039118|Name=TCONS_00039118|organism=Clytia hemisphaerica|type=transcript|length=3176bp|location=Sequence derived from alignment at sc0002020:8842..12017+ (Clytia hemisphaerica)
TCATtgctttctatttattttcattacgtaatgtatctcaaaatggtagg
taaagtaGTGCGTGATTAAACCAGTGGCTGTTTTCATGGAATTTTACTGT
TGCACTAGGTTTTTGATTTATCATTTATTGGGTTAGCTTAGTTGAATGAT
AGAATGTTCCATTAGTTTAACGTCACCACAACATGTTTCTCATtagcttt
tgttttgatttgagaggcaCGCGCTTTAGACAGTTAGTTTTAGGTAGTAA
ATTCCTTTGATCTTGCCattactttcttttttgttaaacagggcaaaatt
gattttggtgctCTTTTTTACGCTAGTTTCCTTAACTGTCAAGCTCTTAC
ACTCATAAAACTGTTTAACTTATTCGCATATCTTGTCTTTATGAGTGAAT
CTTTTTTAATCTCcaacagtcagggaaatccctcaattgcggtataaact
gcaattgcggtagttttcaATCGTGATTAGCCTACAAGGGCTTATAACAg
ctacatatagtgctggtcgacaaagataaatAAACATCGACTGTAAAAAA
TCGTACAAGAAGATGGTagcttttctttatcaaaagaatctgatctacgg
aaaaaatattttgtctgtgcgtgcgttaaaaagatatgataaaTTACtgt
atgtacaaaaattgcctgttttctccttgaatcttgaattctgtttcttg
agtatactgcaattgcggtacatgaaaaatttaaaagtgacgtttatact
gcaattgcagtaagaaattactaccgcaattgtgggatttccctgactgt
ccAAGTAGgagaaaacaattttatataagaaaaatttttctaTTGCCAAC
ACGgatcaaattttttgtaaaatctcttcaACCCATCATCGTTATGAAAC
ACCAGCAATTGGGTTCATTGGTGtttcttttggtttttttatGACTTTCC
CTTGTTCCTTTTTCGATTAGTAGAAATGCAAAAATCAATGTATATACTCA
TCTTATAGACTGATAGATGGCCCTATCTCTCTGTCAcctttctattttct
gactcCCCACAACCCTCACATTTAGCAATTAAAGAAATTCCAATTGATAT
TTTCTGTATTATACAATGAAAAAGGGAGACAGAATTAGTGAGGCGGAGAG
GGTGACAGAGATAGGGCCATCTatggaaatctttaaaaattaaaatttat
agaTTTCTTTGCCTTGTATACTTTAAAATACATGTGGTGTGGCCAGGATT
AGGCAATTCCGCAAGAGCccattttttctgtgttttgctATGAAACAATT
CTTTATTTATGTCTTTTGAAATTTACTGATTCCAATTTTTCAGAGTATTT
GGTCGATATCATTGAGGTCTCCAAAAGGATACCTACTTAAGCAGATCAAA
TCAAAATCTAAATGAAAAATCAACCAGAAATTAGTACCCCtaaaatagtt
gttttggagaacgtgacggcctattgaataaaaaatatagcAGACATAGT
CATAtagaaaatttgttcatttttttaatcatttgttTCAACTTTTATCT
GCTTTTATCTCAACTTTCCTGCAGGTTGATTCTTCTCTCAGTTTGATGTA
TGTCTTTTTGTTGTAGCAATATTGAGCTTATTGTCGCAATACAGTTTAAA
GGGAACTCTAAATAATTCTAAGGAATATCACCTAAAACTACAAATTTCTA
CATAAGACATGTTATCACGTTTTTTTTCAGCCTTCAACTTCAATGTctat
ttcaagaacatttttggtATAAATTAGAATAAGCCATGGAACAGTCATCA
GCAGGTcagttttttattaaatttctgTAACATTTAGTCCAAAAGTCTGC
TCTCCGTACTGCTCCGTAGGCTGGAGAAGATATTTTGTGTTCTTGTGTtt
gcaaattaaaatttctAGTAACTTTTATTACTGACTTACCGGACatcaga
cagacagacagaatttttatctaaaaataacACAAGCAAAAATTATTTGT
GATCTTAGCCTTAATAATTATCCAATGGGAAACAATGACTGCATGTTTCA
CAAGATAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA
TCTTGACACTATCTTGACACTACCTTGACACTACAAACTGACAGTTGAAC
ATTATTAAGTTATTATAACCTTTGGCATGCAATTAAAttccaaaattcga
aatttctaaTACATGTTTTCCAATACATACTCTAGATGATGATCAAGATT
TTGTCTCAGCTGAAAACCAACCCAAAGGTACACAGTTAATAtctcaaaaa
ctttcaatagaTTCTATGCAATTTTAGATTTGATCAGATTTGATAAATTT
CTAGAattgatcaatttttttatcttttttagacTTCAAAGATGAAATTA
AAGCCTGTGAAATCTTAcagatttttatgaaatgtaGAGAAGCAATTGTT
CTTGAACAAGACTTCCAAGCTTTGATCAAACAAAGCTTATTCGATCCGAA
CTTCCCATCTACAGGAACTCCATCTTTACTCATtgcagaaaatgaaattt
tgtcaCTATCGACTTACTCAAAATGCACTGATGGTATCTTTTATGTTATG
CCATTAATATTTGAAGTTTGTGGGGAAAATCAGCTATATCTAAGGTAAAT
AATTTACTATCagattttcttttgtaaatattgttcatggtttcagcccc
ctGGATTTCTTAAGGGCCCCTAGGCC Coding sequence (CDS) from alignment at sc0002020:8842..12017+ >TCONS_00039118 ID=TCONS_00039118|Name=TCONS_00039118|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0002020:8842..12017+ (Clytia hemisphaerica)
ATGGAACAGTCATCAGCAGATGATGATCAAGATTTTGTCTCAGCTGAAAA
CCAACCCAAAGacTTCAAAGATGAAATTAAAGCCTGTGAAATCTTAcaga
tttttatgaaatgtaGAGAAGCAATTGTTCTTGAACAAGACTTCCAAGCT
TTGATCAAACAAAGCTTATTCGATCCGAACTTCCCATCTACAGGAACTCC
ATCTTTACTCATtgcagaaaatgaaattttgtcaCTATCGACTTACTCAA
AATGCACTGATGGTATCTTTTATGTTATGCCATTAATATTTGAAGTTTGT
GGGGAAAATCAGCTATATCTAAGGTAAATGGAACAGTCATCAGCAGATGA
TGATCAAGATTTTGTCTCAGCTGAAAACCAACCCAAAGacTTCAAAGATG
AAATTAAAGCCTGTGAAATCTTAcagatttttatgaaatgtaGAGAAGCA
ATTGTTCTTGAACAAGACTTCCAAGCTTTGATCAAACAAAGCTTATTCGA
TCCGAACTTCCCATCTACAGGAACTCCATCTTTACTCATtgcagaaaatg
aaattttgtcaCTATCGACTTACTCAAAATGCACTGATGGTATCTTTTAT
GTTATGCCATTAATATTTGAAGTTTGTGGGGAAAATCAGCTATATCTAAG
GTAAATGGAACAGTCATCAGCAGATGATGATCAAGATTTTGTCTCAGCTG
AAAACCAACCCAAAGacTTCAAAGATGAAATTAAAGCCTGTGAAATCTTA
cagatttttatgaaatgtaGAGAAGCAATTGTTCTTGAACAAGACTTCCA
AGCTTTGATCAAACAAAGCTTATTCGATCCGAACTTCCCATCTACAGGAA
CTCCATCTTTACTCATtgcagaaaatgaaattttgtcaCTATCGACTTAC
TCAAAATGCACTGATGGTATCTTTTATGTTATGCCATTAATATTTGAAGT
TTGTGGGGAAAATCAGCTATATCTAAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039118-exon-sc0002020-1491911889:8842..9084 | TCONS_00039118-exon-sc0002020-1491911889:8842..9084 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1510915933:8842..9084 | TCONS_00039118-exon-sc0002020-1510915933:8842..9084 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1575043694:8842..9084 | TCONS_00039118-exon-sc0002020-1575043694:8842..9084 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1491911889:10572..10645 | TCONS_00039118-exon-sc0002020-1491911889:10572..10645 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1510915933:10572..10645 | TCONS_00039118-exon-sc0002020-1510915933:10572..10645 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1575043694:10572..10645 | TCONS_00039118-exon-sc0002020-1575043694:10572..10645 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1491911889:11527..11568 | TCONS_00039118-exon-sc0002020-1491911889:11527..11568 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1510915933:11527..11568 | TCONS_00039118-exon-sc0002020-1510915933:11527..11568 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1575043694:11527..11568 | TCONS_00039118-exon-sc0002020-1575043694:11527..11568 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1491911889:11674..12017 | TCONS_00039118-exon-sc0002020-1491911889:11674..12017 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1510915933:11674..12017 | TCONS_00039118-exon-sc0002020-1510915933:11674..12017 | Clytia hemisphaerica | exon |
| TCONS_00039118-exon-sc0002020-1575043694:11674..12017 | TCONS_00039118-exon-sc0002020-1575043694:11674..12017 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002020 | supercontig | sc0002020:8842..12017 + |
Blast
The following BLAST results are available for this feature:
|
