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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039108 ID=TCONS_00039108|Name=TCONS_00039108|organism=Clytia hemisphaerica|type=transcript|length=1162bp
CAAAAGCAGACAGAAGAATTACTAATTTATGTTGGCGATTTGCTAAACTT
AGCACATCCAGACATTTACGATCACTGGCCTCGAGGCTACTCGTCAGCAG
AATCAGTAGTAAAGGCTGGAAATTTGTATTCCTCTGTGAATGAAAAAGCC
ATCTGTTTTAACATGGAGCATCCATTGTACTATTATACACTTGAACCTGG
AGAACCATGCCCAGATTGTTTGGAGATTCCTGATATTCGTCGATATTACC
TTTCATTGAAGGGTAAATTTCAAAGATGGTTTTCGAGCCCCCATATGTGT
CGACTGATGCTAGATCATTGGAAAAATAAAGATGACTGGTTACACGAAAC
CGGAACCTCGTTTCCAgcagatgaaattttgcatggATCACGGTTTAAAG
AAGTGAAATGGTTTTGGGATCCTAATTCAATTTGGGCACTCCCTCATCGA
TGCAGGTGTGAAAATATAATCAATCTTGAAGATGTTACTCAAAATGAACC
TCCATCTTTAACTATAACATGTGATAATTGTCAAAGAAGTGAAACAATTC
GTCCTGTTTATGTCACTGGTGATCCGCGCAATATCGCTCTTATAGGACAT
TGGGATGGATGGCAAACAGGTTTTGGTAGAGGATATTTAAAAGGCTCAGG
TTCCATAGAGCTTACCATTGCCAATATGAGAAAAAAGGAAcgctttaaaa
atgaaaatgtatttGTGTCATCATTTGTGCCAGAGCACAAGCTTCCAAAC
AAACAGCCCACTGCTTTGGATCCTTATTTAGAACCACTTgttgaagaaat
tgaagaattgTTTATTGATGGTATGGACATTGACTATCCAGAGGTTGATG
GTGAGTTTCCAGCGGGTAGATTTAGAGTGCGGTGTATGTTGTTGTGTTGG
ACTGGAGACTATCCAGCCCAATATCAAGTTGGTAAATTTTCCTGTAAAGG
TACTTTTGGTTGCCGTGTAGATAAATgcaaagGCGAGTCAGTTGAAGATG
GTGGTTCAACCAAATATTATATTGGTAATCGTCAAAAGTATCTACAACGC
TGGGATAAAAGAGACATAAAGATTGAAGCAACCACAATGTACGACATAGA
GATGAAGCAATCTATCCATGCAAAGCTTGCTGAGGCAACACAGACTGGCT
ATACAGGACTCA Run BLAST on NCBI protein sequence of TCONS_00039108-protein >TCONS_00039108-protein ID=TCONS_00039108-protein|Name=TCONS_00039108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
QKQTEELLIYVGDLLNLAHPDIYDHWPRGYSSAESVVKAGNLYSSVNEKA
ICFNMEHPLYYYTLEPGEPCPDCLEIPDIRRYYLSLKGKFQRWFSSPHMC
RLMLDHWKNKDDWLHETGTSFPADEILHGSRFKEVKWFWDPNSIWALPHR
CRCENIINLEDVTQNEPPSLTITCDNCQRSETIRPVYVTGDPRNIALIGH
WDGWQTGFGRGYLKGSGSIELTIANMRKKERFKNENVFVSSFVPEHKLPN
KQPTALDPYLEPLVEEIEELFIDGMDIDYPEVDGEFPAGRFRVRCMLLCW
TGDYPAQYQVGKFSCKGTFGCRVDKCKGESVEDGGSTKYYIGNRQKYLQR
WDKRDIKIEATTMYDIEMKQSIHAKLAEATQTGYTGL Run BLAST on NCBI transcript from alignment at sc0002017:7478..10040+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039108 ID=TCONS_00039108|Name=TCONS_00039108|organism=Clytia hemisphaerica|type=transcript|length=2563bp|location=Sequence derived from alignment at sc0002017:7478..10040+ (Clytia hemisphaerica)
CAAAAGCAGACAGAAGAATTACTAATTTATGTTGGCGATTTGCTAAACTT
AGCACATCCAGACATTTACGATCACTGGCCTCGAGGCTACTCGTCAGCAG
AATCAGTAGTAAAGGCTGGAAATTTGTATTCCTCTGTGAATGAAAAAGCC
ATCTGTTTTAACATGGAGCATCCATTGTACTATTATACACTTGAACCTGG
AGAACCATGCCCAGATTGTTTGGAGATTCCTGATATTCGTCGATATTACC
TTTCATTGAAGGGTAAATTTCAAAGATGGTTTTCGAGCCCCCATATGTGT
CGACTGATGCTAGATCATTGGAAAAATAAAGATGACTGGTTACACGAAAC
CGGAACCTCGTTTCCAgcagatgaaattttgcatggATCACGGTTTAAAG
AAGTGAAATGGTTTTGGGATCCTAATTCAATTTGGGCACTCCCTCATCGA
TGCAGGTGTGAAAATATAATCAATCTTGAAGATGTTACTCAAAATGAACC
TCCATCTTTAACTATAACATGTGATAATTGTCAAAGAAGTGAAACAATTC
GTCCTGTTTATGTCACTGGTGATCCGCGCAATATCGCTCTTATAGGACAT
TGGGATGGATGGCAAACAGGTTTTGGTAGAGGATATTTAAAAGGCTCAGG
TAAATTTGTtcttattcttacttttttgtaaGATGATATCTTTTAAACAA
AGAAAGAGAGATGAGAGTTTCAAAAGAATGCTATATTAGCTTAGTCGCAA
ACATTCAATTAAAGgatatttaataaaaaagaacaaaattacAGTTTTCG
AAAAACTTTGAGTCTCAGAACtgttcttagatttttttttttggccattt
tgagcctTGTTGTTGTATAGGAAAGGTTGTACTCTCATGTGACGAATAAA
CAGACTATAGATATATTTGGAGGTTGATTCAGCACCTGTAGAGAGTACTG
ACTAACTTTAATATCAATggtattttgtaattttaaatgGTATATAGAAT
GAACCTGAAATTTGGACAAAGTATTATCTTAAAATTCACCTGATGTAACT
TAAACTTGGTTCAATAAagtgatcaaaattttaaacaaacatttttacaG
TTAGCATTATCTTTTATGCAAAAGATAATCTTTTTTTTAGGTTCCATAGA
GCTTACCATTGCCAATATGAGAAAAAAGGAAcgctttaaaaatgaaaatg
tatttGTGTCATCATTTGTGCCAGAGCACAAGCTTCCAAACAAACAGCCC
ACTGCTTTGGATCCTTATTTAGAACCACTTgttgaagaaattgaagaatt
gTTTATTGATGGTAAACTATATAAGTTAAATCATTAAAATGCTATCTTGA
TGGGTTAAAATTTCTGCGGGtatttatttttatgaatttaacctaatttc
tttcattttcctaagggTTCTCAgtaaaaagcaagaaaaagttaatATTT
CTTCTGTTAAGGTAGTGCAGAGACTTCTTTTAAAGTTGGGGGCTACCTAA
GGGGGGGGGACTTTGTGTTCAGCAACCTAACTGGGGGCTGTGCTAGATTT
ATTTAGGTTTTCCTTGTGACAAAATGCAAATCTACTTGACATTTGTTAAT
AGCTTTATTGTGAAAACCTTTGTTAAAGGTTTTTTAGAAGTTGTCCTTGG
AACACGTacatttctgttttcctcaggAATAGTTGTTCGGGTTCTATTTT
CATATTTGTAAATATTAGTACAGTAAAATAACCTTGAGAAAACTTTTCAT
AGGTATGGACATTGACTATCCAGAGGTTGATGGTGAGTTTCCAGCGGGTA
GATTTAGAGTGCGGTGTATGTTGTTGTGTTGGACTGGAGACTATCCAGCC
CAATATCAAGTTGGTAAATTTTCCTGTAAAGGTACTTTTGGTTGCCGTGT
AGATAAATgcaaaggtaatttttttttgcaaaattcagTTATGCGATTAG
GGATTTTTAGTAAATAACATGAAAAATTTCTTAACGTTTCATTCATGCTT
CATTAATACTGTTATTCAAAAAGTAGTCTTTATTAAGCTTTACTGtgcac
aatagaccttttcataatattacgtcacgagcatcacttgcctcgtattc
aaacaattttcatggtgattatgtccctcgagacattaaatgattgtTTT
ATGAATGgaaagtagttttgataaaatccactgggagtgttaatcaccat
ggcaataatttcaaaacgtggcaagtgatgttcttgacgtaatttatgaa
aagatctatctaaaattaagttttattttttattttttccaaagtgtGTC
TGGGAAGAATTTAGTTtatcttgttgttttttttacttataAGAGGTTCC
CAAGTTGCTAATtgtttgatcaaatttttctaGGCGAGTCAGTTGAAGAT
GGTGGTTCAACCAAATATTATATTGGTAATCGTCAAAAGTATCTACAACG
CTGGGATAAAAGAGACATAAAGATTGAAGCAACCACAATGTACGACATAG
AGATGAAGCAATCTATCCATGCAAAGCTTGCTGAGGCAACACAGACTGGC
TATACAGGACTCA Coding sequence (CDS) from alignment at sc0002017:7478..10040+ >TCONS_00039108 ID=TCONS_00039108|Name=TCONS_00039108|organism=Clytia hemisphaerica|type=CDS|length=4644bp|location=Sequence derived from alignment at sc0002017:7478..10040+ (Clytia hemisphaerica)
CAAAAGCAGACAGAAGAATTACTAATTTATGTTGGCGATTTGCTAAACTT
AGCACATCCAGACATTTACGATCACTGGCCTCGAGGCTACTCGTCAGCAG
AATCAGTAGTAAAGGCTGGAAATTTGTATTCCTCTGTGAATGAAAAAGCC
ATCTGTTTTAACATGGAGCATCCATTGTACTATTATACACTTGAACCTGG
AGAACCATGCCCAGATTGTTTGGAGATTCCTGATATTCGTCGATATTACC
TTTCATTGAAGGGTAAATTTCAAAGATGGTTTTCGAGCCCCCATATGTGT
CGACTGATGCTAGATCATTGGAAAAATAAAGATGACTGGTTACACGAAAC
CGGAACCTCGTTTCCAgcagatgaaattttgcatggATCACGGTTTAAAG
AAGTGAAATGGTTTTGGGATCCTAATTCAATTTGGGCACTCCCTCATCGA
TGCAGGTGTGAAAATATAATCAATCTTGAAGATGTTACTCAAAATGAACC
TCCATCTTTAACTATAACATGTGATAATTGTCAAAGAAGTGAAACAATTC
GTCCTGTTTATGTCACTGGTGATCCGCGCAATATCGCTCTTATAGGACAT
TGGGATGGATGGCAAACAGGTTTTGGTAGAGGATATTTAAAAGGCTCAGG
TTCCATAGAGCTTACCATTGCCAATATGAGAAAAAAGGAAcgctttaaaa
atgaaaatgtatttGTGTCATCATTTGTGCCAGAGCACAAGCTTCCAAAC
AAACAGCCCACTGCTTTGGATCCTTATTTAGAACCACTTgttgaagaaat
tgaagaattgTTTATTGATGGTATGGACATTGACTATCCAGAGGTTGATG
GTGAGTTTCCAGCGGGTAGATTTAGAGTGCGGTGTATGTTGTTGTGTTGG
ACTGGAGACTATCCAGCCCAATATCAAGTTGGTAAATTTTCCTGTAAAGG
TACTTTTGGTTGCCGTGTAGATAAATgcaaagGCGAGTCAGTTGAAGATG
GTGGTTCAACCAAATATTATATTGGTAATCGTCAAAAGTATCTACAACGC
TGGGATAAAAGAGACATAAAGATTGAAGCAACCACAATGTACGACATAGA
GATGAAGCAATCTATCCATGCAAAGCTTGCTGAGGCAACACAGACTGGCT
ATACAGGACTCCAAAAGCAGACAGAAGAATTACTAATTTATGTTGGCGAT
TTGCTAAACTTAGCACATCCAGACATTTACGATCACTGGCCTCGAGGCTA
CTCGTCAGCAGAATCAGTAGTAAAGGCTGGAAATTTGTATTCCTCTGTGA
ATGAAAAAGCCATCTGTTTTAACATGGAGCATCCATTGTACTATTATACA
CTTGAACCTGGAGAACCATGCCCAGATTGTTTGGAGATTCCTGATATTCG
TCGATATTACCTTTCATTGAAGGGTAAATTTCAAAGATGGTTTTCGAGCC
CCCATATGTGTCGACTGATGCTAGATCATTGGAAAAATAAAGATGACTGG
TTACACGAAACCGGAACCTCGTTTCCAgcagatgaaattttgcatggATC
ACGGTTTAAAGAAGTGAAATGGTTTTGGGATCCTAATTCAATTTGGGCAC
TCCCTCATCGATGCAGGTGTGAAAATATAATCAATCTTGAAGATGTTACT
CAAAATGAACCTCCATCTTTAACTATAACATGTGATAATTGTCAAAGAAG
TGAAACAATTCGTCCTGTTTATGTCACTGGTGATCCGCGCAATATCGCTC
TTATAGGACATTGGGATGGATGGCAAACAGGTTTTGGTAGAGGATATTTA
AAAGGCTCAGGTTCCATAGAGCTTACCATTGCCAATATGAGAAAAAAGGA
AcgctttaaaaatgaaaatgtatttGTGTCATCATTTGTGCCAGAGCACA
AGCTTCCAAACAAACAGCCCACTGCTTTGGATCCTTATTTAGAACCACTT
gttgaagaaattgaagaattgTTTATTGATGGTATGGACATTGACTATCC
AGAGGTTGATGGTGAGTTTCCAGCGGGTAGATTTAGAGTGCGGTGTATGT
TGTTGTGTTGGACTGGAGACTATCCAGCCCAATATCAAGTTGGTAAATTT
TCCTGTAAAGGTACTTTTGGTTGCCGTGTAGATAAATgcaaagGCGAGTC
AGTTGAAGATGGTGGTTCAACCAAATATTATATTGGTAATCGTCAAAAGT
ATCTACAACGCTGGGATAAAAGAGACATAAAGATTGAAGCAACCACAATG
TACGACATAGAGATGAAGCAATCTATCCATGCAAAGCTTGCTGAGGCAAC
ACAGACTGGCTATACAGGACTCCAAAAGCAGACAGAAGAATTACTAATTT
ATGTTGGCGATTTGCTAAACTTAGCACATCCAGACATTTACGATCACTGG
CCTCGAGGCTACTCGTCAGCAGAATCAGTAGTAAAGGCTGGAAATTTGTA
TTCCTCTGTGAATGAAAAAGCCATCTGTTTTAACATGGAGCATCCATTGT
ACTATTATACACTTGAACCTGGAGAACCATGCCCAGATTGTTTGGAGATT
CCTGATATTCGTCGATATTACCTTTCATTGAAGGGTAAATTTCAAAGATG
GTTTTCGAGCCCCCATATGTGTCGACTGATGCTAGATCATTGGAAAAATA
AAGATGACTGGTTACACGAAACCGGAACCTCGTTTCCAgcagatgaaatt
ttgcatggATCACGGTTTAAAGAAGTGAAATGGTTTTGGGATCCTAATTC
AATTTGGGCACTCCCTCATCGATGCAGGTGTGAAAATATAATCAATCTTG
AAGATGTTACTCAAAATGAACCTCCATCTTTAACTATAACATGTGATAAT
TGTCAAAGAAGTGAAACAATTCGTCCTGTTTATGTCACTGGTGATCCGCG
CAATATCGCTCTTATAGGACATTGGGATGGATGGCAAACAGGTTTTGGTA
GAGGATATTTAAAAGGCTCAGGTTCCATAGAGCTTACCATTGCCAATATG
AGAAAAAAGGAAcgctttaaaaatgaaaatgtatttGTGTCATCATTTGT
GCCAGAGCACAAGCTTCCAAACAAACAGCCCACTGCTTTGGATCCTTATT
TAGAACCACTTgttgaagaaattgaagaattgTTTATTGATGGTATGGAC
ATTGACTATCCAGAGGTTGATGGTGAGTTTCCAGCGGGTAGATTTAGAGT
GCGGTGTATGTTGTTGTGTTGGACTGGAGACTATCCAGCCCAATATCAAG
TTGGTAAATTTTCCTGTAAAGGTACTTTTGGTTGCCGTGTAGATAAATgc
aaagGCGAGTCAGTTGAAGATGGTGGTTCAACCAAATATTATATTGGTAA
TCGTCAAAAGTATCTACAACGCTGGGATAAAAGAGACATAAAGATTGAAG
CAACCACAATGTACGACATAGAGATGAAGCAATCTATCCATGCAAAGCTT
GCTGAGGCAACACAGACTGGCTATACAGGACTCCAAAAGCAGACAGAAGA
ATTACTAATTTATGTTGGCGATTTGCTAAACTTAGCACATCCAGACATTT
ACGATCACTGGCCTCGAGGCTACTCGTCAGCAGAATCAGTAGTAAAGGCT
GGAAATTTGTATTCCTCTGTGAATGAAAAAGCCATCTGTTTTAACATGGA
GCATCCATTGTACTATTATACACTTGAACCTGGAGAACCATGCCCAGATT
GTTTGGAGATTCCTGATATTCGTCGATATTACCTTTCATTGAAGGGTAAA
TTTCAAAGATGGTTTTCGAGCCCCCATATGTGTCGACTGATGCTAGATCA
TTGGAAAAATAAAGATGACTGGTTACACGAAACCGGAACCTCGTTTCCAg
cagatgaaattttgcatggATCACGGTTTAAAGAAGTGAAATGGTTTTGG
GATCCTAATTCAATTTGGGCACTCCCTCATCGATGCAGGTGTGAAAATAT
AATCAATCTTGAAGATGTTACTCAAAATGAACCTCCATCTTTAACTATAA
CATGTGATAATTGTCAAAGAAGTGAAACAATTCGTCCTGTTTATGTCACT
GGTGATCCGCGCAATATCGCTCTTATAGGACATTGGGATGGATGGCAAAC
AGGTTTTGGTAGAGGATATTTAAAAGGCTCAGGTTCCATAGAGCTTACCA
TTGCCAATATGAGAAAAAAGGAAcgctttaaaaatgaaaatgtatttGTG
TCATCATTTGTGCCAGAGCACAAGCTTCCAAACAAACAGCCCACTGCTTT
GGATCCTTATTTAGAACCACTTgttgaagaaattgaagaattgTTTATTG
ATGGTATGGACATTGACTATCCAGAGGTTGATGGTGAGTTTCCAGCGGGT
AGATTTAGAGTGCGGTGTATGTTGTTGTGTTGGACTGGAGACTATCCAGC
CCAATATCAAGTTGGTAAATTTTCCTGTAAAGGTACTTTTGGTTGCCGTG
TAGATAAATgcaaagGCGAGTCAGTTGAAGATGGTGGTTCAACCAAATAT
TATATTGGTAATCGTCAAAAGTATCTACAACGCTGGGATAAAAGAGACAT
AAAGATTGAAGCAACCACAATGTACGACATAGAGATGAAGCAATCTATCC
ATGCAAAGCTTGCTGAGGCAACACAGACTGGCTATACAGGACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039108-exon-sc0002017-1491911889:7478..8126 | TCONS_00039108-exon-sc0002017-1491911889:7478..8126 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1510915933:7478..8126 | TCONS_00039108-exon-sc0002017-1510915933:7478..8126 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1575043694:7478..8126 | TCONS_00039108-exon-sc0002017-1575043694:7478..8126 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1491911889:8618..8788 | TCONS_00039108-exon-sc0002017-1491911889:8618..8788 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1510915933:8618..8788 | TCONS_00039108-exon-sc0002017-1510915933:8618..8788 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1575043694:8618..8788 | TCONS_00039108-exon-sc0002017-1575043694:8618..8788 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1491911889:9230..9391 | TCONS_00039108-exon-sc0002017-1491911889:9230..9391 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1510915933:9230..9391 | TCONS_00039108-exon-sc0002017-1510915933:9230..9391 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1575043694:9230..9391 | TCONS_00039108-exon-sc0002017-1575043694:9230..9391 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1491911889:9861..10040 | TCONS_00039108-exon-sc0002017-1491911889:9861..10040 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1510915933:9861..10040 | TCONS_00039108-exon-sc0002017-1510915933:9861..10040 | Clytia hemisphaerica | exon |
| TCONS_00039108-exon-sc0002017-1575043694:9861..10040 | TCONS_00039108-exon-sc0002017-1575043694:9861..10040 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002017 | supercontig | sc0002017:7478..10040 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR004242 | Transposase_21 |
Blast
The following BLAST results are available for this feature:
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