TCONS_00039107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039107
Unique NameTCONS_00039107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039107 ID=TCONS_00039107|Name=TCONS_00039107|organism=Clytia hemisphaerica|type=transcript|length=1513bp
cgaaaaatttagaaaaatagtttttaacaaaaatgcTCCTTAAAAAATAC
CATTTAAATTCAAAAGTGCTATTGCATCGTTATAAATATCAATCCCAAAG
GAATCAGAGTGCTGCTTTGGATTGATATTGTTACGTAAAATTAAGGCAGT
CTGTTCTAGCATTGGAAAATTAAGTTCGGGAACTTCAATAACATTTTCAT
TTCTTCTTTCATATGCTATTGGGTCTTCCCAATCAATACCAAAATCCTGT
TCGTTTACAACTCCAGCTAGAAAGTCTAGGTTCCTTTGAGGGTATTTAAT
CAATCCAGATATCCAAAGTTGAATAGGAGTTCGATTACTTTCAGTCCGAA
GTTGATGATGATCCCAACCGTTCCAAAACAACTTAAGGTGGTCGTTGATA
CGAGTTTCGAAAATATAGTGCAAAACATACAATTGAACACTGTTACTGAT
ATCTAGATAAAAGTTTTCTTCAAGGTAAGTGAAAACAGAATGAAAAATAC
CCAAAGATCCAACAAAAACGTCACGCCAAAGACGCTCGATGCGCTGGTTG
TGGCAACTTTTCCCAGCTATAAAACTGCCACGTCCTGTTCCCCGTAAAGG
ATTTGTTAACATATATCGAGCGACATCTACATTTTCTCCTCCTTGATCTG
CACGTACTCTTGATGGTAAACCATACGTTTCACTTGCTTCTATGAAAAGA
TTGAACACTGTTGACgctttgttgtttgtggaaCAATTTAAATACATGAT
ACGCCTGGAATACCCATCTATTCCTCCATGCACCACAAACCCCCATCTTA
TTAGTTTATGGTTGCCATCAATATGCCATAAGGATAGGGGACCAGGTACA
AAATATTTTCTACGAATGATAATTTTGCAGTGAAGAGATCGTCTCAATAG
TCCTTCAGGATCAACTTCCCACATGGCTGCTCGTACACGCTCCCATTGGA
TTCTGTAGCCACAAGAAAGAAGCATTCCTTTCATTCTACGAATACCGCAA
TTAGGAAATTCAGCTATGATGTTCGAGATGAGAGTGTTCAAATCATTATC
ACTTATGTTGCTATGTCGTGAATGTTTCAATTCAAAATCATGGACTCGTC
GTTTAATAGTTTCTTTGCTTACAGAAAAGTAATCACCAATCTCCTGGTAT
GTAAATCCATATCCGATCAGCAATGATATACTATCAATGTTTAAATCATA
TTTCGGTCTTCCAGCATTTCCTGTATAAATAACCAAAGGCTTAACCGCTT
CTTCATCTCTAATGAAACTATCTAAATTATGGTATACCAAATGAAGCATC
TGTAAAACATCCGGAATATTATACTGTGTGACACCTCTTGAAACTATATT
TATTACTTGTCCAATTTGGTATAATGCGTAGTCAACCATGTTTGCATCAC
CAGAGCTTTCCGTTAAGCATCTTATAATTGATCTGATGCTTGAATTAACA
AATTCCATAAAATGTGTTCTTGTTGTTGTTCTTATTGACATTTTTTAATC
TAAAACATTGAAG
Run BLAST on NCBI

protein sequence of TCONS_00039107-protein

>TCONS_00039107-protein ID=TCONS_00039107-protein|Name=TCONS_00039107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
MSIRTTTRTHFMEFVNSSIRSIIRCLTESSGDANMVDYALYQIGQVINIV
SRGVTQYNIPDVLQMLHLVYHNLDSFIRDEEAVKPLVIYTGNAGRPKYDL
NIDSISLLIGYGFTYQEIGDYFSVSKETIKRRVHDFELKHSRHSNISDND
LNTLISNIIAEFPNCGIRRMKGMLLSCGYRIQWERVRAAMWEVDPEGLLR
RSLHCKIIIRRKYFVPGPLSLWHIDGNHKLIRWGFVVHGGIDGYSRRIMY
LNCSTNNKASTVFNLFIEASETYGLPSRVRADQGGENVDVARYMLTNPLR
GTGRGSFIAGKSCHNQRIERLWRDVFVGSLGIFHSVFTYLEENFYLDISN
SVQLYVLHYIFETRINDHLKLFWNGWDHHQLRTESNRTPIQLWISGLIKY
PQRNLDFLAGVVNEQDFGIDWEDPIAYERRNENVIEVPELNFPMLEQTAL
ILRNNINPKQHSDSFGIDIYNDAIALLNLNGIF
Run BLAST on NCBI

transcript from alignment at sc0002015:17598..19110

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039107 ID=TCONS_00039107|Name=TCONS_00039107|organism=Clytia hemisphaerica|type=transcript|length=1513bp|location=Sequence derived from alignment at sc0002015:17598..19110 (Clytia hemisphaerica)
CTTCAATGTTTTAGATTAAAAAATGTCAATAAGAACAACAACAAGAACAC
ATTTTATGGAATTTGTTAATTCAAGCATCAGATCAATTATAAGATGCTTA
ACGGAAAGCTCTGGTGATGCAAACATGGTTGACTACGCATTATACCAAAT
TGGACAAGTAATAAATATAGTTTCAAGAGGTGTCACACAGTATAATATTC
CGGATGTTTTACAGATGCTTCATTTGGTATACCATAATTTAGATAGTTTC
ATTAGAGATGAAGAAGCGGTTAAGCCTTTGGTTATTTATACAGGAAATGC
TGGAAGACCGAAATATGATTTAAACATTGATAGTATATCATTGCTGATCG
GATATGGATTTACATACCAGGAGATTGGTGATTACTTTTCTGTAAGCAAA
GAAACTATTAAACGACGAGTCCATGATTTTGAATTGAAACATTCACGACA
TAGCAACATAAGTGATAATGATTTGAACACTCTCATCTCGAACATCATAG
CTGAATTTCCTAATTGCGGTATTCGTAGAATGAAAGGAATGCTTCTTTCT
TGTGGCTACAGAATCCAATGGGAGCGTGTACGAGCAGCCATGTGGGAAGT
TGATCCTGAAGGACTATTGAGACGATCTCTTCACTGCAAAATTATCATTC
GTAGAAAATATTTTGTACCTGGTCCCCTATCCTTATGGCATATTGATGGC
AACCATAAACTAATAAGATGGGGGTTTGTGGTGCATGGAGGAATAGATGG
GTATTCCAGGCGTATCATGTATTTAAATTGttccacaaacaacaaagcGT
CAACAGTGTTCAATCTTTTCATAGAAGCAAGTGAAACGTATGGTTTACCA
TCAAGAGTACGTGCAGATCAAGGAGGAGAAAATGTAGATGTCGCTCGATA
TATGTTAACAAATCCTTTACGGGGAACAGGACGTGGCAGTTTTATAGCTG
GGAAAAGTTGCCACAACCAGCGCATCGAGCGTCTTTGGCGTGACGTTTTT
GTTGGATCTTTGGGTATTTTTCATTCTGTTTTCACTTACCTTGAAGAAAA
CTTTTATCTAGATATCAGTAACAGTGTTCAATTGTATGTTTTGCACTATA
TTTTCGAAACTCGTATCAACGACCACCTTAAGTTGTTTTGGAACGGTTGG
GATCATCATCAACTTCGGACTGAAAGTAATCGAACTCCTATTCAACTTTG
GATATCTGGATTGATTAAATACCCTCAAAGGAACCTAGACTTTCTAGCTG
GAGTTGTAAACGAACAGGATTTTGGTATTGATTGGGAAGACCCAATAGCA
TATGAAAGAAGAAATGAAAATGTTATTGAAGTTCCCGAACTTAATTTTCC
AATGCTAGAACAGACTGCCTTAATTTTACGTAACAATATCAATCCAAAGC
AGCACTCTGATTCCTTTGGGATTGATATTTATAACGATGCAATAGCACTT
TTGAATTTAAATGGTATTTTTTAAGGAgcatttttgttaaaaactatttt
tctaaatttttcg

Coding sequence (CDS) from alignment at sc0002015:17598..19110

>TCONS_00039107 ID=TCONS_00039107|Name=TCONS_00039107|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0002015:17598..19110 (Clytia hemisphaerica)
ATGTCAATAAGAACAACAACAAGAACACATTTTATGGAATTTGTTAATTC
AAGCATCAGATCAATTATAAGATGCTTAACGGAAAGCTCTGGTGATGCAA
ACATGGTTGACTACGCATTATACCAAATTGGACAAGTAATAAATATAGTT
TCAAGAGGTGTCACACAGTATAATATTCCGGATGTTTTACAGATGCTTCA
TTTGGTATACCATAATTTAGATAGTTTCATTAGAGATGAAGAAGCGGTTA
AGCCTTTGGTTATTTATACAGGAAATGCTGGAAGACCGAAATATGATTTA
AACATTGATAGTATATCATTGCTGATCGGATATGGATTTACATACCAGGA
GATTGGTGATTACTTTTCTGTAAGCAAAGAAACTATTAAACGACGAGTCC
ATGATTTTGAATTGAAACATTCACGACATAGCAACATAAGTGATAATGAT
TTGAACACTCTCATCTCGAACATCATAGCTGAATTTCCTAATTGCGGTAT
TCGTAGAATGAAAGGAATGCTTCTTTCTTGTGGCTACAGAATCCAATGGG
AGCGTGTACGAGCAGCCATGTGGGAAGTTGATCCTGAAGGACTATTGAGA
CGATCTCTTCACTGCAAAATTATCATTCGTAGAAAATATTTTGTACCTGG
TCCCCTATCCTTATGGCATATTGATGGCAACCATAAACTAATAAGATGGG
GGTTTGTGGTGCATGGAGGAATAGATGGGTATTCCAGGCGTATCATGTAT
TTAAATTGttccacaaacaacaaagcGTCAACAGTGTTCAATCTTTTCAT
AGAAGCAAGTGAAACGTATGGTTTACCATCAAGAGTACGTGCAGATCAAG
GAGGAGAAAATGTAGATGTCGCTCGATATATGTTAACAAATCCTTTACGG
GGAACAGGACGTGGCAGTTTTATAGCTGGGAAAAGTTGCCACAACCAGCG
CATCGAGCGTCTTTGGCGTGACGTTTTTGTTGGATCTTTGGGTATTTTTC
ATTCTGTTTTCACTTACCTTGAAGAAAACTTTTATCTAGATATCAGTAAC
AGTGTTCAATTGTATGTTTTGCACTATATTTTCGAAACTCGTATCAACGA
CCACCTTAAGTTGTTTTGGAACGGTTGGGATCATCATCAACTTCGGACTG
AAAGTAATCGAACTCCTATTCAACTTTGGATATCTGGATTGATTAAATAC
CCTCAAAGGAACCTAGACTTTCTAGCTGGAGTTGTAAACGAACAGGATTT
TGGTATTGATTGGGAAGACCCAATAGCATATGAAAGAAGAAATGAAAATG
TTATTGAAGTTCCCGAACTTAATTTTCCAATGCTAGAACAGACTGCCTTA
ATTTTACGTAACAATATCAATCCAAAGCAGCACTCTGATTCCTTTGGGAT
TGATATTTATAACGATGCAATAGCACTTTTGAATTTAAATGGTATTTTTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023555XLOC_023555Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039107-proteinTCONS_00039107-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039107-exon-sc0002015-1491911889:17598..19110TCONS_00039107-exon-sc0002015-1491911889:17598..19110Clytia hemisphaericaexon
TCONS_00039107-exon-sc0002015-1510915933:17598..19110TCONS_00039107-exon-sc0002015-1510915933:17598..19110Clytia hemisphaericaexon
TCONS_00039107-exon-sc0002015-1575043694:17598..19110TCONS_00039107-exon-sc0002015-1575043694:17598..19110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002015supercontigsc0002015:17598..19110 .
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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