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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039105 ID=TCONS_00039105|Name=TCONS_00039105|organism=Clytia hemisphaerica|type=transcript|length=689bp
GCAAAACatagaaatgaaaaattattaccTATCAACAATGGAAACTTTAC
TGAAAACACCGAGAAGAATTTTGTTTCTTATGGAATAAATGTGCTATCTT
GGACAAAAGTAGTAATTGACCAGCCAGggacaaaatttgaatttatggAT
GTGTTTACAAACTACCAGGATTGAGATACAGATTTATCAAGATTAAAGAT
GCTACTACCAAGGAGCGCTTCAGAAACTTGTAGAGGATGACAAGGTGCAG
TTATCACAAAAGCCAAACATCGAGATCTATAAATCAATGTTTTCATTGGA
AACTGATGTAAAAAACTAGTCGACTGAATCAAAAATATCATTGCTTaata
aaaagatgttttttCCACGAGAAAGGGAATTTCATAGTTGTCTTCACAAT
ATATTTAAAGAAGTGTATGgtATGACGATCAACCTTCTTTGGTTCACACT
TCAGCATTGCCATCAATGTTCATCATAAATTCGTTGATGGAATATTTAGA
TAATTGTTTTAACTTGTTTCTTGGTGGAACGTGAAGATTTGGAATCCAGG
CTGGTTGGTAAATGAGATTTAAAGGCACTCTTCAGCCTAAACATGCTTAT
TAActttatgcttataagaaagTGTACAATTTTAAGGCATTCACTGAATT
TTGGGTTTAGCTGTACTTGCTAAGGATTTGTAAGTTTTT Run BLAST on NCBI transcript from alignment at sc0002015:19531..21034+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039105 ID=TCONS_00039105|Name=TCONS_00039105|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at sc0002015:19531..21034+ (Clytia hemisphaerica)
GCAAAACatagaaatgaaaaattattaccTATCAACAATGGAAACTTTAC
TGAAAACACCGAGAAGAATTTTGTTTCTTATGGAATAAATGTGCTATCTT
GGACAAAAGTAGTAATTGACCAGCCAGggacaaaatttgaatttatggAT
GTGTTTACAAACTACCAGGATTGAGATACAGATTTATCAAGGTAGGTTTA
ATTCAATATTGTTAAGTTGACTCTAACATTCGATGAGTTTCAATGAGATG
CAAAATTGAGTCATTAAACTTTCTAATAAAACATACACAGTCCAAAGCTC
ACAAAAAAGGTTTTAATAGGATACCCTTAAGTTTAAAATGTAAATTCGGA
ATAATTTTACACTGTAGGAAATTAGGAAGGGATACTTAAAACACTGAGCA
AAGTTTACTAATCTACTGGATGTCTACTTGTAAAGTCGATTGTCAATTGA
TAGATCTAAAAAGGtctgaagtttttcaatttgTCTCTAACATTCTCCAT
TCCCATTACCATGACCTGACTGTATGTCCATTGTCAAGAGTAATAGAATT
TGGAAATGATTATTTTTCAGATTAAAGATGCTACTACCAAGGAGCGCTTC
AGAAACTTGTAGAGGATGACAAGGTGCAGTTATCACAAAAGCCAAACATC
GAGATCTATAAATCAATGTTTTCATTGGAAACTGATGTAAAAAACTAGTC
GACTGAATCAAAAATATCATTGCTTaataaaaagatgttttttCCACGAG
AAAGGGAATTTCATAGTTGTCTTCACAATATATTTAAAGAAGTGTATGGT
ACGTATTTAAACATATATACTACCCCCTCCTTATAATCAATATTGAAACC
GTTCAACTTTTGAAACATAATGACGAAAAAAGCTGGAGCTTAATTTGGCA
AAGCCGCCCAATTCGCtaaattttcttcccgccaaaattagtattttgta
TTAGTACAATATAGTATGGCTGACTCAGTATTCTTTCTTTTAACTACAAT
TAAACTACTCAGTTTTTTAGGGCTTTAAAGTTTAAGGGTTTTAAGGGTTC
ATTGTTTTAATATTCATGAATTGCTTGTTAAATCtttgaaattaattaaa
aatgttcATTGATTGTTATtcttttgataaccaggtaCAGGTAGGTCtat
caaagtatcacttgttgctCAACCGTTATTTTGTGTTGCTTCAATGTAGA
AATTTAATatttaaacttatttttttatttctaggtATGACGATCAACCT
TCTTTGGTTCACACTTCAGCATTGCCATCAATGTTCATCATAAATTCGTT
GATGGAATATTTAGATAATTGTTTTAACTTGTTTCTTGGTGGAACGTGAA
GATTTGGAATCCAGGCTGGTTGGTAAATGAGATTTAAAGGCACTCTTCAG
CCTAAACATGCTTATTAActttatgcttataagaaagTGTACAATTTTAA
GGCATTCACTGAATTTTGGGTTTAGCTGTACTTGCTAAGGATTTGTAAGT
TTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039105-exon-sc0002015-1491911889:19531..19721 | TCONS_00039105-exon-sc0002015-1491911889:19531..19721 | Clytia hemisphaerica | exon |
| TCONS_00039105-exon-sc0002015-1510915933:19531..19721 | TCONS_00039105-exon-sc0002015-1510915933:19531..19721 | Clytia hemisphaerica | exon |
| TCONS_00039105-exon-sc0002015-1575043694:19531..19721 | TCONS_00039105-exon-sc0002015-1575043694:19531..19721 | Clytia hemisphaerica | exon |
| TCONS_00039105-exon-sc0002015-1491911889:20101..20328 | TCONS_00039105-exon-sc0002015-1491911889:20101..20328 | Clytia hemisphaerica | exon |
| TCONS_00039105-exon-sc0002015-1510915933:20101..20328 | TCONS_00039105-exon-sc0002015-1510915933:20101..20328 | Clytia hemisphaerica | exon |
| TCONS_00039105-exon-sc0002015-1575043694:20101..20328 | TCONS_00039105-exon-sc0002015-1575043694:20101..20328 | Clytia hemisphaerica | exon |
| TCONS_00039105-exon-sc0002015-1491911889:20765..21034 | TCONS_00039105-exon-sc0002015-1491911889:20765..21034 | Clytia hemisphaerica | exon |
| TCONS_00039105-exon-sc0002015-1510915933:20765..21034 | TCONS_00039105-exon-sc0002015-1510915933:20765..21034 | Clytia hemisphaerica | exon |
| TCONS_00039105-exon-sc0002015-1575043694:20765..21034 | TCONS_00039105-exon-sc0002015-1575043694:20765..21034 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002015 | supercontig | sc0002015:19531..21034 + |
Blast
The following BLAST results are available for this feature:
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