TCONS_00039094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039094
Unique NameTCONS_00039094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039094 ID=TCONS_00039094|Name=TCONS_00039094|organism=Clytia hemisphaerica|type=transcript|length=566bp
AAAACAATTACAAATATTAGCTTTGTCTAATATGGTCATTATATTCAATG
AGCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATTAAACCAAGCTCAC
GACAACTATGGGTGTCATTCAGTTGGTCGTGGAACACTTAAACCGAAAGC
ATCTCTGCTCGCCTCGTCAAATCAACTGATACCACACATAAAGCTGGACA
CACGAATCCAAATTATGACGTGTGAAGAGGGGGAAGACTTCGACAAAGTC
GGAGACAAAAGGGCTTTGGATAATGATTTGACAAAATTGGTTGAATCAAA
TCCTGGATTTCTCATCGCCTGGTGTACCTGGCACAATGATATGGTTTGTA
AAGCGATGGAAAGATTTGCAGACAAAGTTGCCAATGAAATTATCAGTTCA
CGCAACGACATTAAATCTCGCTTGTTGGACGCCAAGCGCGACAACGTGAT
AATTGCTTTCCTGCTCCTCGCTCAGTATGAGAATGATAGGGACTATATTA
GCCCCTCAGCTATCTACAACAAGATTGTTGGCCAGTCCGTCCATGCCAAT
TCGATTGATAAAGAAA
Run BLAST on NCBI

protein sequence of TCONS_00039094-protein

>TCONS_00039094-protein ID=TCONS_00039094-protein|Name=TCONS_00039094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
KQLQILALSNMVIIFNELEIASPMVGKALNQAHDNYGCHSVGRGTLKPKA
SLLASSNQLIPHIKLDTRIQIMTCEEGEDFDKVGDKRALDNDLTKLVESN
PGFLIAWCTWHNDMVCKAMERFADKVANEIISSRNDIKSRLLDAKRDNVI
IAFLLLAQYENDRDYISPSAIYNKIVGQSVHANSIDKE
Run BLAST on NCBI

transcript from alignment at sc0002011:29875..31760+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039094 ID=TCONS_00039094|Name=TCONS_00039094|organism=Clytia hemisphaerica|type=transcript|length=1886bp|location=Sequence derived from alignment at sc0002011:29875..31760+ (Clytia hemisphaerica)
AAAACAATTACAAATATTAGCTTTGTCTAATATGGTCATTATATTCAATG
AGCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATTAAACCAAGCTCAC
GACAACTATGGGTGTCATTCAGTTGGTCGTGGAACACTTAAACCGAAAGC
ATCTCTGCTCGCCTCGTCAAATCAACTGATACCACACATAAAGTAATTat
ctaatttgattttaattaaaTACGTTCTCAAACAGTCTTGACTACTTTAA
TACagtcattttacatttttttacatttttccatTCACTAGAGGGATTCA
ATATTCTCAACTTTAGTTGAGTTAGAATATTGTGTGTATGTATGTAACTG
TGTCTGTCAGTCCCCTCAAAGCTTTGGGGCAAGCCgaagacttttttttt
tttcatttttagggtgGTCACAAGTTTTAGCCCAAAACGAGGTTAAAAAC
TTTGGGCCAGGCTGGAGACATAAAATTATCTAATATGATTTTCATATTGC
TAAAGTTTTCTACGTTTGATCCTTGGGTGTGGATTCAAATTAGCTTGGCT
TACATGgattttacaattgggcctacgaatgactTTAAAGATACTGAAAT
TGTGTCAGTGCGGTTAGCAAGTTAAAGAGTAGAATAAGTCATTGGTCAAT
TTTCTTTAGGCTGGACACACGAATCCAAATTATGACGTGTGAAGAGGGGG
AAGACTTCGACAAAGTCGGAGACAAAAGGGCTTTGGATAATGATTTGACA
AAATTGGTTGAATCAAATCCTGTAAGTAatcattttatttgttttcgaAG
GCTTTTACTTAATTCTATTAGAATCACATTGAAAACAGAGTTTATAGAAA
AGAATGAGAGTATTGGTGATTTACTCTTTTGAAAATCATAGGTGAAGAAT
TAtacctaccttaagggaagaaatttttgcgggaatttaatttcggggtt
gatcaaattattttttttcgcgggaatttaatttcgcggctcagcaattt
tcgaaaaattcgcgggaatttaatttcgcggttgcaggatatttttggcc
aaaagcgttattaagcaaaaaacctattttaaggcttgaaaaagTACGAA
TTTGGGGAATGCgttaaataaattaaattttgcggattaaaattttgtaa
aatttcgcgggaacttaatttcgcggttttaggcaaaatccgcgaaaacc
gAGAAATTTTGTttctgcgaaaatttcttcccttaaggtaatggTTCACA
GTGCTCAAGCGGTGTGTTTTGACAACCTGTGACATGGCAacaccaaaaaa
tatttcatgttttattcTCTTGATTTTAGGGATTTCTCATCGCCTGGTGT
ACCTGGCACAATGATATGGTTTGTAAAGCGATGGAAAGATTTGCAGACAA
AGTTGCCAATGAAATTATCAGTTCACGCAACGACATTAAATCTCGCTTGT
TGGACGCCAAGCGCGACAACGTGATAATTGCTTTCCTGGTTGGTGATTTT
TTATTGTGcttttcattcttttctttttctgaatCTTTGTGGAAGTCCTA
TGAAAGTTCGTTAGTTATTTTGTCCGTTCGTTAGTTTGCTCAtattcgtt
accagcttttctcaaaattggctcattcaatttttcagattttttgcaca
aagatgctaATTATTAACCCTTTAATAATACAGAGCTTGATTtccaggaa
aattttttttcaaatttctacaATAGACAAAAGACAATCAGGTACATGCT
CCAGAATGCAAATCTGTGGTTTTCTTCTTTTAGCTCCTCGCTCAGTATGA
GAATGATAGGGACTATATTAGCCCCTCAGCTATCTACAACAAGATTGTTG
GCCAGTCCGTCCATGCCAATTCGATTGATAAAGAAA

Coding sequence (CDS) from alignment at sc0002011:29875..31760+

>TCONS_00039094 ID=TCONS_00039094|Name=TCONS_00039094|organism=Clytia hemisphaerica|type=CDS|length=2256bp|location=Sequence derived from alignment at sc0002011:29875..31760+ (Clytia hemisphaerica)
AAACAATTACAAATATTAGCTTTGTCTAATATGGTCATTATATTCAATGA
GCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATTAAACCAAGCTCACG
ACAACTATGGGTGTCATTCAGTTGGTCGTGGAACACTTAAACCGAAAGCA
TCTCTGCTCGCCTCGTCAAATCAACTGATACCACACATAAAGCTGGACAC
ACGAATCCAAATTATGACGTGTGAAGAGGGGGAAGACTTCGACAAAGTCG
GAGACAAAAGGGCTTTGGATAATGATTTGACAAAATTGGTTGAATCAAAT
CCTGGATTTCTCATCGCCTGGTGTACCTGGCACAATGATATGGTTTGTAA
AGCGATGGAAAGATTTGCAGACAAAGTTGCCAATGAAATTATCAGTTCAC
GCAACGACATTAAATCTCGCTTGTTGGACGCCAAGCGCGACAACGTGATA
ATTGCTTTCCTGCTCCTCGCTCAGTATGAGAATGATAGGGACTATATTAG
CCCCTCAGCTATCTACAACAAGATTGTTGGCCAGTCCGTCCATGCCAATT
CGATTGATAAAGAAAAACAATTACAAATATTAGCTTTGTCTAATATGGTC
ATTATATTCAATGAGCTAGAGATTGCTTCGCCAATGGTTGGAAAGGCATT
AAACCAAGCTCACGACAACTATGGGTGTCATTCAGTTGGTCGTGGAACAC
TTAAACCGAAAGCATCTCTGCTCGCCTCGTCAAATCAACTGATACCACAC
ATAAAGCTGGACACACGAATCCAAATTATGACGTGTGAAGAGGGGGAAGA
CTTCGACAAAGTCGGAGACAAAAGGGCTTTGGATAATGATTTGACAAAAT
TGGTTGAATCAAATCCTGGATTTCTCATCGCCTGGTGTACCTGGCACAAT
GATATGGTTTGTAAAGCGATGGAAAGATTTGCAGACAAAGTTGCCAATGA
AATTATCAGTTCACGCAACGACATTAAATCTCGCTTGTTGGACGCCAAGC
GCGACAACGTGATAATTGCTTTCCTGCTCCTCGCTCAGTATGAGAATGAT
AGGGACTATATTAGCCCCTCAGCTATCTACAACAAGATTGTTGGCCAGTC
CGTCCATGCCAATTCGATTGATAAAGAAAAACAATTACAAATATTAGCTT
TGTCTAATATGGTCATTATATTCAATGAGCTAGAGATTGCTTCGCCAATG
GTTGGAAAGGCATTAAACCAAGCTCACGACAACTATGGGTGTCATTCAGT
TGGTCGTGGAACACTTAAACCGAAAGCATCTCTGCTCGCCTCGTCAAATC
AACTGATACCACACATAAAGCTGGACACACGAATCCAAATTATGACGTGT
GAAGAGGGGGAAGACTTCGACAAAGTCGGAGACAAAAGGGCTTTGGATAA
TGATTTGACAAAATTGGTTGAATCAAATCCTGGATTTCTCATCGCCTGGT
GTACCTGGCACAATGATATGGTTTGTAAAGCGATGGAAAGATTTGCAGAC
AAAGTTGCCAATGAAATTATCAGTTCACGCAACGACATTAAATCTCGCTT
GTTGGACGCCAAGCGCGACAACGTGATAATTGCTTTCCTGCTCCTCGCTC
AGTATGAGAATGATAGGGACTATATTAGCCCCTCAGCTATCTACAACAAG
ATTGTTGGCCAGTCCGTCCATGCCAATTCGATTGATAAAGAAAAACAATT
ACAAATATTAGCTTTGTCTAATATGGTCATTATATTCAATGAGCTAGAGA
TTGCTTCGCCAATGGTTGGAAAGGCATTAAACCAAGCTCACGACAACTAT
GGGTGTCATTCAGTTGGTCGTGGAACACTTAAACCGAAAGCATCTCTGCT
CGCCTCGTCAAATCAACTGATACCACACATAAAGCTGGACACACGAATCC
AAATTATGACGTGTGAAGAGGGGGAAGACTTCGACAAAGTCGGAGACAAA
AGGGCTTTGGATAATGATTTGACAAAATTGGTTGAATCAAATCCTGGATT
TCTCATCGCCTGGTGTACCTGGCACAATGATATGGTTTGTAAAGCGATGG
AAAGATTTGCAGACAAAGTTGCCAATGAAATTATCAGTTCACGCAACGAC
ATTAAATCTCGCTTGTTGGACGCCAAGCGCGACAACGTGATAATTGCTTT
CCTGCTCCTCGCTCAGTATGAGAATGATAGGGACTATATTAGCCCCTCAG
CTATCTACAACAAGATTGTTGGCCAGTCCGTCCATGCCAATTCGATTGAT
AAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023542XLOC_023542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039094-exon-sc0002011-1491911889:29875..30066TCONS_00039094-exon-sc0002011-1491911889:29875..30066Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1510915933:29875..30066TCONS_00039094-exon-sc0002011-1510915933:29875..30066Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1575043694:29875..30066TCONS_00039094-exon-sc0002011-1575043694:29875..30066Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1491911889:30534..30645TCONS_00039094-exon-sc0002011-1491911889:30534..30645Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1510915933:30534..30645TCONS_00039094-exon-sc0002011-1510915933:30534..30645Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1575043694:30534..30645TCONS_00039094-exon-sc0002011-1575043694:30534..30645Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1491911889:31204..31362TCONS_00039094-exon-sc0002011-1491911889:31204..31362Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1510915933:31204..31362TCONS_00039094-exon-sc0002011-1510915933:31204..31362Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1575043694:31204..31362TCONS_00039094-exon-sc0002011-1575043694:31204..31362Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1491911889:31658..31760TCONS_00039094-exon-sc0002011-1491911889:31658..31760Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1510915933:31658..31760TCONS_00039094-exon-sc0002011-1510915933:31658..31760Clytia hemisphaericaexon
TCONS_00039094-exon-sc0002011-1575043694:31658..31760TCONS_00039094-exon-sc0002011-1575043694:31658..31760Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039094-proteinTCONS_00039094-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002011supercontigsc0002011:29875..31760 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.339833	0.302506	0.154546	0.191902	1.6129	2.07014	1.86899	2.38915	1.1335	1.96036	1.2654	1.64185	0.753005	0.573667	0.877982	0.997248	0.711301	0.41909	0.692989	0.186936	0.737767	0.32729	0.315759	0	0	0.352701	0	0	0.168546	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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