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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039093 ID=TCONS_00039093|Name=TCONS_00039093|organism=Clytia hemisphaerica|type=transcript|length=517bp
CGTTcgtaaagcaaaaaagagGATGACGAAATCAGATGTTCCCATTCCTG
TTAAAGAATCGACAATGGAACTAAAGAAGCATCTTAGATCAGAAGTTATA
GCTGGTACGTATTCTATTGGTGAGTCGATCGTCCCACAGACGTTCACATG
TTTGGAGCTTAATGGGACCAAGATGAGAAAGAAAACATACGAGGTGGCAG
GTCGCAAATTTTCGATACAACACGTGAAAGACACAATGATGAAGCTTCAG
AGACCGTATTACCGTGTCAAACCaaacaaattttatgaagatCTCGATGA
CGAAACATTAAAGAAGGAATTGGCTCGTATTGGCGAAACTGGTAACGCGG
ATGATTTAAAACGTTTTCACCGTCATCGGACAATTATGTGCTGGCACGAC
ACGTCTGGTATCATCAATTCGTCGCACTTTTTGGTCATGTTTTCGACCGT
TTATGATGCGGCCCTTTTCCTTACAGACGACGAATTCTTTGAAATTGCAG
GTAATATAAATGTTTAG Run BLAST on NCBI protein sequence of TCONS_00039093-protein >TCONS_00039093-protein ID=TCONS_00039093-protein|Name=TCONS_00039093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
VRKAKKRMTKSDVPIPVKESTMELKKHLRSEVIAGTYSIGESIVPQTFTC
LELNGTKMRKKTYEVAGRKFSIQHVKDTMMKLQRPYYRVKPNKFYEDLDD
ETLKKELARIGETGNADDLKRFHRHRTIMCWHDTSGIINSSHFLVMFSTV
YDAALFLTDDEFFEIAGNINV Run BLAST on NCBI transcript from alignment at sc0002011:7778..9147+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039093 ID=TCONS_00039093|Name=TCONS_00039093|organism=Clytia hemisphaerica|type=transcript|length=1370bp|location=Sequence derived from alignment at sc0002011:7778..9147+ (Clytia hemisphaerica)
CGTTcgtaaagcaaaaaagaggttTTAAAACTAACATTTTACTTCATTTT
TAATTGGTCTAACGTGggcttttgtttttaatatgtCTTACTAATTTTCT
CTGAGTTTCTGTTGTTAATCTAAATTTActtcattttataattttcttgC
AGTATATATTTCCTACTTATATTGTACAAAAGCCTAACTCCTAACTCTTT
CCCAGTCAAGACGGTATACTTACTGTTATCGTGTTGTTGTTTTAGGATGA
CGAAATCAGATGTTCCCATTCCTGTTAAAGAATCGACAATGGAACTAAAG
AAGCATCTTAGATCAGAAGTTATAGCTGTAAGTACAAATTAATTTGTACT
ACGCTCCTCTattaatttgtattttatttgtttcaagtAAATTTTACTTA
GTTAGACGGTGGACGATATTTCGANCGAAGTTATAGCTGTAAGTACAAAT
TAATTTGTACTACGCTCCTCTATTAtgtaatttgtattttatttgtttca
agtAAATTTTACTTAGTTAGACGGTGGACGATAATTCGACAGAATGTGAG
gaggattttttttctaaattagcTAACTCATTTTTAGGGTACGTATTCTA
TTGGTGAGTCGATCGTCCCACAGACGTTCACATGTTTGGAGCTTAATGGG
ACCAAGATGAGAAAGAAAACATACGAGGTGGCAGGTAGGGCAAATATTTG
AATCccttaaaaataagtttttatttataatgtttgacttttattttgag
aagttttatttttaataagaTAGTGCTTTCTCTTTTTAAGATCTGTATTG
GAAACTGGTCTCGTATAcccttttttaataattttaaggACGACCCCTTG
CACGTGCATTCAAGCgtttgttgaaatatttccaaTGCTTCTCATTTTCA
TTTGGTTAGCCTTCCTatataatttttcgattttgatgaGCAGATTTGTC
GGCACTCATTTTTAAAACATGCTGTTTGAAATAAAATGATGAAATCACCA
TTATAAAGCTTAAAGTAGAGAGTACCAAAATGTCTGGTTGTTTTTAATTC
AAGGTCGCAAATTTTCGATACAACACGTGAAAGACACAATGATGAAGCTT
CAGAGACCGTATTACCGTGTCAAACCaaacaaattttatgaagatCTCGA
TGACGAAACATTAAAGAAGGAATTGGCTCGTATTGGCGAAACTGGTAACG
CGGATGATTTAAAACGTTTTCACCGTCATCGGACAATTATGTGCTGGCAC
GACACGTCTGGTATCATCAATTCGTCGCACTTTTTGGTCATGTTTTCGAC
CGTTTATGATGCGGCCCTTTTCCTTACAGACGACGAATTCTTTGAAATTG
CAGGTAATATAAATGTTTAG Coding sequence (CDS) from alignment at sc0002011:7778..9147+ >TCONS_00039093 ID=TCONS_00039093|Name=TCONS_00039093|organism=Clytia hemisphaerica|type=CDS|length=2064bp|location=Sequence derived from alignment at sc0002011:7778..9147+ (Clytia hemisphaerica)
GTTcgtaaagcaaaaaagagGATGACGAAATCAGATGTTCCCATTCCTGT
TAAAGAATCGACAATGGAACTAAAGAAGCATCTTAGATCAGAAGTTATAG
CTGGTACGTATTCTATTGGTGAGTCGATCGTCCCACAGACGTTCACATGT
TTGGAGCTTAATGGGACCAAGATGAGAAAGAAAACATACGAGGTGGCAGG
TCGCAAATTTTCGATACAACACGTGAAAGACACAATGATGAAGCTTCAGA
GACCGTATTACCGTGTCAAACCaaacaaattttatgaagatCTCGATGAC
GAAACATTAAAGAAGGAATTGGCTCGTATTGGCGAAACTGGTAACGCGGA
TGATTTAAAACGTTTTCACCGTCATCGGACAATTATGTGCTGGCACGACA
CGTCTGGTATCATCAATTCGTCGCACTTTTTGGTCATGTTTTCGACCGTT
TATGATGCGGCCCTTTTCCTTACAGACGACGAATTCTTTGAAATTGCAGG
TAATATAAATGTTTAGGTTcgtaaagcaaaaaagagGATGACGAAATCAG
ATGTTCCCATTCCTGTTAAAGAATCGACAATGGAACTAAAGAAGCATCTT
AGATCAGAAGTTATAGCTGGTACGTATTCTATTGGTGAGTCGATCGTCCC
ACAGACGTTCACATGTTTGGAGCTTAATGGGACCAAGATGAGAAAGAAAA
CATACGAGGTGGCAGGTCGCAAATTTTCGATACAACACGTGAAAGACACA
ATGATGAAGCTTCAGAGACCGTATTACCGTGTCAAACCaaacaaatttta
tgaagatCTCGATGACGAAACATTAAAGAAGGAATTGGCTCGTATTGGCG
AAACTGGTAACGCGGATGATTTAAAACGTTTTCACCGTCATCGGACAATT
ATGTGCTGGCACGACACGTCTGGTATCATCAATTCGTCGCACTTTTTGGT
CATGTTTTCGACCGTTTATGATGCGGCCCTTTTCCTTACAGACGACGAAT
TCTTTGAAATTGCAGGTAATATAAATGTTTAGGTTcgtaaagcaaaaaag
agGATGACGAAATCAGATGTTCCCATTCCTGTTAAAGAATCGACAATGGA
ACTAAAGAAGCATCTTAGATCAGAAGTTATAGCTGGTACGTATTCTATTG
GTGAGTCGATCGTCCCACAGACGTTCACATGTTTGGAGCTTAATGGGACC
AAGATGAGAAAGAAAACATACGAGGTGGCAGGTCGCAAATTTTCGATACA
ACACGTGAAAGACACAATGATGAAGCTTCAGAGACCGTATTACCGTGTCA
AACCaaacaaattttatgaagatCTCGATGACGAAACATTAAAGAAGGAA
TTGGCTCGTATTGGCGAAACTGGTAACGCGGATGATTTAAAACGTTTTCA
CCGTCATCGGACAATTATGTGCTGGCACGACACGTCTGGTATCATCAATT
CGTCGCACTTTTTGGTCATGTTTTCGACCGTTTATGATGCGGCCCTTTTC
CTTACAGACGACGAATTCTTTGAAATTGCAGGTAATATAAATGTTTAGGT
TcgtaaagcaaaaaagagGATGACGAAATCAGATGTTCCCATTCCTGTTA
AAGAATCGACAATGGAACTAAAGAAGCATCTTAGATCAGAAGTTATAGCT
GGTACGTATTCTATTGGTGAGTCGATCGTCCCACAGACGTTCACATGTTT
GGAGCTTAATGGGACCAAGATGAGAAAGAAAACATACGAGGTGGCAGGTC
GCAAATTTTCGATACAACACGTGAAAGACACAATGATGAAGCTTCAGAGA
CCGTATTACCGTGTCAAACCaaacaaattttatgaagatCTCGATGACGA
AACATTAAAGAAGGAATTGGCTCGTATTGGCGAAACTGGTAACGCGGATG
ATTTAAAACGTTTTCACCGTCATCGGACAATTATGTGCTGGCACGACACG
TCTGGTATCATCAATTCGTCGCACTTTTTGGTCATGTTTTCGACCGTTTA
TGATGCGGCCCTTTTCCTTACAGACGACGAATTCTTTGAAATTGCAGGTA
ATATAAATGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039093-exon-sc0002011-1491911889:7778..7798 | TCONS_00039093-exon-sc0002011-1491911889:7778..7798 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1510915933:7778..7798 | TCONS_00039093-exon-sc0002011-1510915933:7778..7798 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1575043694:7778..7798 | TCONS_00039093-exon-sc0002011-1575043694:7778..7798 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1491911889:8023..8104 | TCONS_00039093-exon-sc0002011-1491911889:8023..8104 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1510915933:8023..8104 | TCONS_00039093-exon-sc0002011-1510915933:8023..8104 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1575043694:8023..8104 | TCONS_00039093-exon-sc0002011-1575043694:8023..8104 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1491911889:8365..8461 | TCONS_00039093-exon-sc0002011-1491911889:8365..8461 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1510915933:8365..8461 | TCONS_00039093-exon-sc0002011-1510915933:8365..8461 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1575043694:8365..8461 | TCONS_00039093-exon-sc0002011-1575043694:8365..8461 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1491911889:8831..9147 | TCONS_00039093-exon-sc0002011-1491911889:8831..9147 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1510915933:8831..9147 | TCONS_00039093-exon-sc0002011-1510915933:8831..9147 | Clytia hemisphaerica | exon |
| TCONS_00039093-exon-sc0002011-1575043694:8831..9147 | TCONS_00039093-exon-sc0002011-1575043694:8831..9147 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002011 | supercontig | sc0002011:7778..9147 + |
Blast
The following BLAST results are available for this feature:
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