TCONS_00039084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039084
Unique NameTCONS_00039084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039084 ID=TCONS_00039084|Name=TCONS_00039084|organism=Clytia hemisphaerica|type=transcript|length=1601bp
gaataaaaaaaaacattacagaattctcagaaattttgaaaaaatgatca
aaatggcTGAATCTACTTCCACATCTACTGCTGCTTCAGTTACCACTGCT
AATGAAGACTTTTTTGATGATGATTTAGATGAGGTTATAATAAACTTCAT
TCCAGATGAGCTTGCTCAGTTAATTATCAGTGGAGCCGATCCAAATTTGA
ACTTAATCCATGCACAAGTTGGCGCTTCAGACGATTCTAAAAAAACACTG
cctaaaattgttttgaagcTCACATCTCAGGATGTCGAGTCTAAGTCTGA
TGAGTTGTGGCGAAAAGCTGTCATTACCTTGCAAGAAGACATGTATTATT
TCATTGGGAGTAAAGAAATAGTTGAAAAACGAAAAGATACTTTAGCCAAT
ATGTTATCAAATTTATCAGATTCTCATATGTTTAACTTAAAGATAACAAT
GAAACTTTACACCATGATCGAACTTTCTCTCCCAACAACGTCCCTTATTT
CAGAGGGAAGAAAACTCATGTGGCAAAGATTTTATGGATACCTTAGTTCA
AACGAATCTAAAGTTGACTTAACGCATTTGGAGGAAATATCGACAGTGGT
AAATTTTGATATACTTACTTACAGGttaacttcaaaacttttggaatTGC
TAATCACCGCCAACATCGAATCATACATAGCTGAGTCATCATCAACTACA
TCCTCTGCATCTAATAATGGAAGAGAGAAAATGGATGATCGTGAGCAGAA
TATTGTGAATTATGTTGCCGGATTTATTGCACACTCAGCAAAAAAGTACT
ACAAACGAAAAGGCAGTGAGGGGGAACAATTTATTGCAGCTATCAAAACA
TGGAGCACTGGGAAGAAAGCAAAATGTTTTGAGTTCAAAAACAAATGGAT
TGACCTCCGGGATCGTGGTGGATTAGTGCATGTTAGTGacaattgttttt
tattctttcGGGCTATTGAGTATTCTGTACGTGACGTCTTCAATCCTGTG
ACATTAAATAACTATGCTGGtgagaatttgaaagaattgATCAAAGAGAG
AATTTACAAACGGAAATATGTAATTTATCGCTGGGATGAGCTAATGAAAG
GTGATGAGCTGGACTCAATTGAAAAAGAGAGTTTGTTTAAGTTGGTTGTT
GTACAATGGATTGACATACGTGGCAAGGCATTTGTCAGAGCTTGGGTGGA
TGGGTTAAGACAAAAATACAAGGACAAAGTGTCAGATAAAGGAGAGCATT
CCCATAGAAAGCAATTAAATGCTAAAAGAAACAATAAATCTAATCCGACA
TCTAAatgattttactattttttagcattttactTATTAAAATGTGTAAC
ACAAAGCAATACTTTACAATAGTCTTTTTGGGCGAAATGACATCTCATCC
AAGAAATcttcaactttttgttttttgtttcaatGAAACCAACAATGGAT
TGGTGTTATTTTGTTGAGAATATATTTCGATATCTAGTATCATCTTCAGC
TCTAAACTATAGaaacaaagttaaaattttgaatttgttgaaaTATTTCA
GGATACTTCTAATGAAGATGAGAAATGAAGGGATCCAGTCGAGTACAATA
T
Run BLAST on NCBI

protein sequence of TCONS_00039084-protein

>TCONS_00039084-protein ID=TCONS_00039084-protein|Name=TCONS_00039084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
NKKKHYRILRNFEKMIKMAESTSTSTAASVTTANEDFFDDDLDEVIINFI
PDELAQLIISGADPNLNLIHAQVGASDDSKKTLPKIVLKLTSQDVESKSD
ELWRKAVITLQEDMYYFIGSKEIVEKRKDTLANMLSNLSDSHMFNLKITM
KLYTMIELSLPTTSLISEGRKLMWQRFYGYLSSNESKVDLTHLEEISTVV
NFDILTYRLTSKLLELLITANIESYIAESSSTTSSASNNGREKMDDREQN
IVNYVAGFIAHSAKKYYKRKGSEGEQFIAAIKTWSTGKKAKCFEFKNKWI
DLRDRGGLVHVSDNCFLFFRAIEYSVRDVFNPVTLNNYAGENLKELIKER
IYKRKYVIYRWDELMKGDELDSIEKESLFKLVVVQWIDIRGKAFVRAWVD
GLRQKYKDKVSDKGEHSHRKQLNAKRNNKSNPTSK
Run BLAST on NCBI

transcript from alignment at sc0002008:183..2436+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039084 ID=TCONS_00039084|Name=TCONS_00039084|organism=Clytia hemisphaerica|type=transcript|length=2254bp|location=Sequence derived from alignment at sc0002008:183..2436+ (Clytia hemisphaerica)
gaataaaaaaaaacattacagaattctcagaaattttgaaaaaatgatca
aaatggcTGAATCTACTTCCACATTGAATTTTACTCACGGCAGACATCCT
CATCCTACTTTTTGACCCGCATTTTCAAAATCCGATTAGACGGGGGTTTT
GTTATTATCatttaggtagggtcagggttgctagtaacggcttgtcactg
tgccgggtgcatactcggcgccttgggccccgcagggttgctagtaacgg
ctcgaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcagtcaggttaaaaaaggggtacttt
tacccatattataataacattacccccgtcttttttgtcattctataagt
atttacaaattttgtattCTGCTGTGcaagtgtggctcaacggatagcgc
gctgggtttctgatcagagaatctttcatttggtgggttcgaaccctggt
cgggtcgatatttggagaaagtttgaaTTTGAAGTATCAAATTCATACAA
AAGTTAGTTgaaatcagaaaacaagtctcagaaggtcagaaaatagaaaa
ggagatagagAGATAGGAATTGGAAAAACAGAAGGGGGATATGAGGATGT
CTGCCGTGAGTAAGATTCCTTCCACATCTACTGCTGCTTCAGTTACCACT
GCTAATGAAGACTTTTTTGATGATGATTTAGATGAGGTTATAATAAACTT
CATTCCAGATGAGCTTGCTCAGTTAATTATCAGTGGAGCCGATCCAAATT
TGAACTTAATCCATGCACAAGTTGGCGCTTCAGACGATTCTAAAAAAACA
CTGcctaaaattgttttgaagcTCACATCTCAGGATGTCGAGTCTAAGTC
TGATGAGTTGTGGCGAAAAGCTGTCATTACCTTGCAAGAAGACATGTATT
ATTTCATTGGGAGTAAAGAAATAGTTGAAAAACGAAAAGATACTTTAGCC
AATATGTTATCAAATTTATCAGATTCTCATATGTTTAACTTAAAGATAAC
AATGAAACTTTACACCATGATCGAACTTTCTCTCCCAACAACGTCCCTTA
TTTCAGAGGGAAGAAAACTCATGTGGCAAAGATTTTATGGATACCTTAGT
TCAAACGAATCTAAAGTTGACTTAACGCATTTGGAGGAAATATCGACAGT
GGTAAATTTTGATATACTTACTTACAGGttaacttcaaaacttttggaat
TGCTAATCACCGCCAACATCGAATCATACATAGCTGAGTCATCATCAACT
ACATCCTCTGCATCTAATAATGGAAGAGAGAAAATGGATGATCGTGAGCA
GAATATTGTGAATTATGTTGCCGGATTTATTGCACACTCAGCAAAAAAGT
ACTACAAACGAAAAGGCAGTGAGGGGGAACAATTTATTGCAGCTATCAAA
ACATGGAGCACTGGGAAGAAAGCAAAATGTTTTGAGTTCAAAAACAAATG
GATTGACCTCCGGGATCGTGGTGGATTAGTGCATGTTAGTGacaattgtt
ttttattctttcGGGCTATTGAGTATTCTGTACGTGACGTCTTCAATCCT
GTGACATTAAATAACTATGCTGGtgagaatttgaaagaattgATCAAAGA
GAGAATTTACAAACGGAAATATGTAATTTATCGCTGGGATGAGCTAATGA
AAGGTGATGAGCTGGACTCAATTGAAAAAGAGAGTTTGTTTAAGTTGGTT
GTTGTACAATGGATTGACATACGTGGCAAGGCATTTGTCAGAGCTTGGGT
GGATGGGTTAAGACAAAAATACAAGGACAAAGTGTCAGATAAAGGAGAGC
ATTCCCATAGAAAGCAATTAAATGCTAAAAGAAACAATAAATCTAATCCG
ACATCTAAatgattttactattttttagcattttactTATTAAAATGTGT
AACACAAAGCAATACTTTACAATAGTCTTTTTGGGCGAAATGACATCTCA
TCCAAGAAATcttcaactttttgttttttgtttcaatGAAACCAACAATG
GATTGGTGTTATTTTGTTGAGAATATATTTCGATATCTAGTATCATCTTC
AGCTCTAAACTATAGaaacaaagttaaaattttgaatttgttgaaaTATT
TCAGGATACTTCTAATGAAGATGAGAAATGAAGGGATCCAGTCGAGTACA
ATAT

Coding sequence (CDS) from alignment at sc0002008:183..2436+

>TCONS_00039084 ID=TCONS_00039084|Name=TCONS_00039084|organism=Clytia hemisphaerica|type=CDS|length=2616bp|location=Sequence derived from alignment at sc0002008:183..2436+ (Clytia hemisphaerica)
aataaaaaaaaacattacagaattctcagaaattttgaaaaaatgatcaa
aatggcTGAATCTACTTCCACATCTACTGCTGCTTCAGTTACCACTGCTA
ATGAAGACTTTTTTGATGATGATTTAGATGAGGTTATAATAAACTTCATT
CCAGATGAGCTTGCTCAGTTAATTATCAGTGGAGCCGATCCAAATTTGAA
CTTAATCCATGCACAAGTTGGCGCTTCAGACGATTCTAAAAAAACACTGc
ctaaaattgttttgaagcTCACATCTCAGGATGTCGAGTCTAAGTCTGAT
GAGTTGTGGCGAAAAGCTGTCATTACCTTGCAAGAAGACATGTATTATTT
CATTGGGAGTAAAGAAATAGTTGAAAAACGAAAAGATACTTTAGCCAATA
TGTTATCAAATTTATCAGATTCTCATATGTTTAACTTAAAGATAACAATG
AAACTTTACACCATGATCGAACTTTCTCTCCCAACAACGTCCCTTATTTC
AGAGGGAAGAAAACTCATGTGGCAAAGATTTTATGGATACCTTAGTTCAA
ACGAATCTAAAGTTGACTTAACGCATTTGGAGGAAATATCGACAGTGGTA
AATTTTGATATACTTACTTACAGGttaacttcaaaacttttggaatTGCT
AATCACCGCCAACATCGAATCATACATAGCTGAGTCATCATCAACTACAT
CCTCTGCATCTAATAATGGAAGAGAGAAAATGGATGATCGTGAGCAGAAT
ATTGTGAATTATGTTGCCGGATTTATTGCACACTCAGCAAAAAAGTACTA
CAAACGAAAAGGCAGTGAGGGGGAACAATTTATTGCAGCTATCAAAACAT
GGAGCACTGGGAAGAAAGCAAAATGTTTTGAGTTCAAAAACAAATGGATT
GACCTCCGGGATCGTGGTGGATTAGTGCATGTTAGTGacaattgtttttt
attctttcGGGCTATTGAGTATTCTGTACGTGACGTCTTCAATCCTGTGA
CATTAAATAACTATGCTGGtgagaatttgaaagaattgATCAAAGAGAGA
ATTTACAAACGGAAATATGTAATTTATCGCTGGGATGAGCTAATGAAAGG
TGATGAGCTGGACTCAATTGAAAAAGAGAGTTTGTTTAAGTTGGTTGTTG
TACAATGGATTGACATACGTGGCAAGGCATTTGTCAGAGCTTGGGTGGAT
GGGTTAAGACAAAAATACAAGGACAAAGTGTCAGATAAAGGAGAGCATTC
CCATAGAAAGCAATTAAATGCTAAAAGAAACAATAAATCTAATCCGACAT
CTAAatgaaataaaaaaaaacattacagaattctcagaaattttgaaaaa
atgatcaaaatggcTGAATCTACTTCCACATCTACTGCTGCTTCAGTTAC
CACTGCTAATGAAGACTTTTTTGATGATGATTTAGATGAGGTTATAATAA
ACTTCATTCCAGATGAGCTTGCTCAGTTAATTATCAGTGGAGCCGATCCA
AATTTGAACTTAATCCATGCACAAGTTGGCGCTTCAGACGATTCTAAAAA
AACACTGcctaaaattgttttgaagcTCACATCTCAGGATGTCGAGTCTA
AGTCTGATGAGTTGTGGCGAAAAGCTGTCATTACCTTGCAAGAAGACATG
TATTATTTCATTGGGAGTAAAGAAATAGTTGAAAAACGAAAAGATACTTT
AGCCAATATGTTATCAAATTTATCAGATTCTCATATGTTTAACTTAAAGA
TAACAATGAAACTTTACACCATGATCGAACTTTCTCTCCCAACAACGTCC
CTTATTTCAGAGGGAAGAAAACTCATGTGGCAAAGATTTTATGGATACCT
TAGTTCAAACGAATCTAAAGTTGACTTAACGCATTTGGAGGAAATATCGA
CAGTGGTAAATTTTGATATACTTACTTACAGGttaacttcaaaacttttg
gaatTGCTAATCACCGCCAACATCGAATCATACATAGCTGAGTCATCATC
AACTACATCCTCTGCATCTAATAATGGAAGAGAGAAAATGGATGATCGTG
AGCAGAATATTGTGAATTATGTTGCCGGATTTATTGCACACTCAGCAAAA
AAGTACTACAAACGAAAAGGCAGTGAGGGGGAACAATTTATTGCAGCTAT
CAAAACATGGAGCACTGGGAAGAAAGCAAAATGTTTTGAGTTCAAAAACA
AATGGATTGACCTCCGGGATCGTGGTGGATTAGTGCATGTTAGTGacaat
tgttttttattctttcGGGCTATTGAGTATTCTGTACGTGACGTCTTCAA
TCCTGTGACATTAAATAACTATGCTGGtgagaatttgaaagaattgATCA
AAGAGAGAATTTACAAACGGAAATATGTAATTTATCGCTGGGATGAGCTA
ATGAAAGGTGATGAGCTGGACTCAATTGAAAAAGAGAGTTTGTTTAAGTT
GGTTGTTGTACAATGGATTGACATACGTGGCAAGGCATTTGTCAGAGCTT
GGGTGGATGGGTTAAGACAAAAATACAAGGACAAAGTGTCAGATAAAGGA
GAGCATTCCCATAGAAAGCAATTAAATGCTAAAAGAAACAATAAATCTAA
TCCGACATCTAAatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023532XLOC_023532Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039084-proteinTCONS_00039084-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039084-exon-sc0002008-1491911889:183..254TCONS_00039084-exon-sc0002008-1491911889:183..254Clytia hemisphaericaexon
TCONS_00039084-exon-sc0002008-1510915933:183..254TCONS_00039084-exon-sc0002008-1510915933:183..254Clytia hemisphaericaexon
TCONS_00039084-exon-sc0002008-1575043694:183..254TCONS_00039084-exon-sc0002008-1575043694:183..254Clytia hemisphaericaexon
TCONS_00039084-exon-sc0002008-1491911889:908..2436TCONS_00039084-exon-sc0002008-1491911889:908..2436Clytia hemisphaericaexon
TCONS_00039084-exon-sc0002008-1510915933:908..2436TCONS_00039084-exon-sc0002008-1510915933:908..2436Clytia hemisphaericaexon
TCONS_00039084-exon-sc0002008-1575043694:908..2436TCONS_00039084-exon-sc0002008-1575043694:908..2436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002008supercontigsc0002008:183..2436 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0476802	0.0136044	0.142889	0.258481	0.997917	1.09746	1.05924	1.09974	1.63105e-06	1.33913	0.527305	0.300348	0.337836	0.608293	0.580436	1.09811	0.646685	0.538807	0	0.218803	0.464339	0.623121	0.493809	0.111017	1.25822	1.18778	1.63757	1.28622	0.342964	0.379367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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