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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039078 ID=TCONS_00039078|Name=TCONS_00039078|organism=Clytia hemisphaerica|type=transcript|length=1180bp
AATTGATCACTTACTAGTCTGGACCATCTGTTTCTCAAATAGATTTTATT
CTTATCCCTCGTAACCACCTTAAATTAGTTCATAATGTTACTGTTATAAA
TGGGGAACAATGTACACCCCAGCACAAATTAATTATTGGTGACATGAAAC
CTACTCTAGATGTGTCTGGAAACTGAAAGACCCTGCTTTGTCCGAAGTCT
TTCATGAATGTGTTGACGCTAAATTACAAAACGTTGTCATTGCCAATGAT
ATTGAGTCTTGGAATATATTAAAGTCTTCCATTCTCGAGTCATTTGATAC
AACCTATGGTTGGTCTAAATCGCAACAAGGTGTAAAGAAAATCGGTGGTG
AAATGAAACCGTTGATTTTGCGGCGAAAGAAAAGTGCAGACTTTGGAAAT
GTTGGAAACAAGGTGGTCAGAAAGAGCCCTACTTGGATGTCAAACGTAGA
GCGAAGTCTGGGGTTTATATTGCTAAGAAAAATGCTTCTGATGAAAGATT
TTGCTATCTTCATGACAAGGATAACCTGAATCATGTTTTCCAGCTTGCCA
GAaagttaaaatctgaaaatcaggACATTGTTGGCAAGAAATTTATCAAG
AATAAAGAAGGTGTCATTGTGTATGATGATAAGTCGAAATTAGATGTTTA
TGGAAGCAACATTACGCGGTACTTTTGAATTCGGAGTTTGATTGGGACGA
ATCTGTTCTCTCTCATGCAGAGTTCATCATAGGTCCCCCGTTAAAAATTC
GGCAGGAAATGGTACTATCAGctataaagaaaatgaagtcTTGCAAATCT
GTGGGCCCTAGTGGCATTTTTCCGGTCATTCTCTAACAAACTAACACCAC
TTATAAATATGTTCATTCGTGAAGGTAAAGTTCCTGTAGAATGGAATGAA
TCTTTCATTATCAGTCTGTACAAAGGTAAAGGTGACTCACTAGAGTGTGG
CAACCGTCGCTGTCTTAAGTTGCTTGAAGTTTCACTTAAAGTTCTTGAAC
ATATTCTCGAAATTCGTGTCAAAGAGCAAATCTCAATCGATGAGATGCAA
TTCGGCTTCATGCCTGGTCGTGGTACGACTGATGCTATTTCTATTCTTCG
ACAGCTACAAGAAAAATATCTAGGCAAAAGGAAAGATATTGTCTTCGCCT
TCGTAGATTTGGAAAAGGCCTTTGATCGCA Run BLAST on NCBI protein sequence of TCONS_00039078-protein >TCONS_00039078-protein ID=TCONS_00039078-protein|Name=TCONS_00039078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MFIREGKVPVEWNESFIISLYKGKGDSLECGNRRCLKLLEVSLKVLEHIL
EIRVKEQISIDEMQFGFMPGRGTTDAISILRQLQEKYLGKRKDIVFAFVD
LEKAFDR Run BLAST on NCBI transcript from alignment at sc0002006:23582..24761 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039078 ID=TCONS_00039078|Name=TCONS_00039078|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at sc0002006:23582..24761 (Clytia hemisphaerica)
TGCGATCAAAGGCCTTTTCCAAATCTACGAAGGCGAAGACAATATCTTTC
CTTTTGCCTAGATATTTTTCTTGTAGCTGTCGAAGAATAGAAATAGCATC
AGTCGTACCACGACCAGGCATGAAGCCGAATTGCATCTCATCGATTGAGA
TTTGCTCTTTGACACGAATTTCGAGAATATGTTCAAGAACTTTAAGTGAA
ACTTCAAGCAACTTAAGACAGCGACGGTTGCCACACTCTAGTGAGTCACC
TTTACCTTTGTACAGACTGATAATGAAAGATTCATTCCATTCTACAGGAA
CTTTACCTTCACGAATGAACATATTTATAAGTGGTGTTAGTTTGTTAGAG
AATGACCGGAAAAATGCCACTAGGGCCCACAGATTTGCAAgacttcattt
tctttatagCTGATAGTACCATTTCCTGCCGAATTTTTAACGGGGGACCT
ATGATGAACTCTGCATGAGAGAGAACAGATTCGTCCCAATCAAACTCCGA
ATTCAAAAGTACCGCGTAATGTTGCTTCCATAAACATCTAATTTCGACTT
ATCATCATACACAATGACACCTTCTTTATTCTTGATAAATTTCTTGCCAA
CAATGTcctgattttcagattttaacttTCTGGCAAGCTGGAAAACATGA
TTCAGGTTATCCTTGTCATGAAGATAGCAAAATCTTTCATCAGAAGCATT
TTTCTTAGCAATATAAACCCCAGACTTCGCTCTACGTTTGACATCCAAGT
AGGGCTCTTTCTGACCACCTTGTTTCCAACATTTCCAAAGTCTGCACTTT
TCTTTCGCCGCAAAATCAACGGTTTCATTTCACCACCGATTTTCTTTACA
CCTTGTTGCGATTTAGACCAACCATAGGTTGTATCAAATGACTCGAGAAT
GGAAGACTTTAATATATTCCAAGACTCAATATCATTGGCAATGACAACGT
TTTGTAATTTAGCGTCAACACATTCATGAAAGACTTCGGACAAAGCAGGG
TCTTTCAGTTTCCAGACACATCTAGAGTAGGTTTCATGTCACCAATAATT
AATTTGTGCTGGGGTGTACATTGTTCCCCATTTATAACAGTAACATTATG
AACTAATTTAAGGTGGTTACGAGGGATAAGAATAAAATCTATTTGAGAAA
CAGATGGTCCAGACTAGTAAGTGATCAATT Coding sequence (CDS) from alignment at sc0002006:23582..24761 >TCONS_00039078 ID=TCONS_00039078|Name=TCONS_00039078|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0002006:23582..24761 (Clytia hemisphaerica)
GCGATCAAAGGCCTTTTCCAAATCTACGAAGGCGAAGACAATATCTTTCC
TTTTGCCTAGATATTTTTCTTGTAGCTGTCGAAGAATAGAAATAGCATCA
GTCGTACCACGACCAGGCATGAAGCCGAATTGCATCTCATCGATTGAGAT
TTGCTCTTTGACACGAATTTCGAGAATATGTTCAAGAACTTTAAGTGAAA
CTTCAAGCAACTTAAGACAGCGACGGTTGCCACACTCTAGTGAGTCACCT
TTACCTTTGTACAGACTGATAATGAAAGATTCATTCCATTCTACAGGAAC
TTTACCTTCACGAATGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039078-exon-sc0002006-1491911889:23582..24761 | TCONS_00039078-exon-sc0002006-1491911889:23582..24761 | Clytia hemisphaerica | exon |
| TCONS_00039078-exon-sc0002006-1510915933:23582..24761 | TCONS_00039078-exon-sc0002006-1510915933:23582..24761 | Clytia hemisphaerica | exon |
| TCONS_00039078-exon-sc0002006-1575043694:23582..24761 | TCONS_00039078-exon-sc0002006-1575043694:23582..24761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002006 | supercontig | sc0002006:23582..24761 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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