TCONS_00039074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039074
Unique NameTCONS_00039074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039074 ID=TCONS_00039074|Name=TCONS_00039074|organism=Clytia hemisphaerica|type=transcript|length=751bp
GTGATCATGTATTGCACTGTGTCTTCCGGTGAGTTGGTATCTCTGTAAAA
ATACTCAGTCCTGCAACTGTGAGTAGGTTGACGACAGGAAGGACATCCGG
TCATAAAACTCATGCATCAACTCTTCTTCAAAGTCCTTTCTCTGTAACTC
AAGGTGTTTTTCGTGTCAATGAGTGAATGGCTATACATAGTTAGTCGCGA
ACGGTTGCGTATTCTGTGGCGAGTAGCCTAATCTAGTGTGCTGGGTAACT
CAGAAGGGCTTTATTGACCCATGCATGTTACACATGGTCCTGACAGCCAA
ATATGAAAactaaaatatttacaaatattCGCGCTGGTACTTTGAATGTC
GGAACCATGAAAGGTAGATCTGGAGAAATTGTAGACACAGTTTCACGACG
CGAAATTTCAATCTGTGCGATTCAAGAATCTCGCTGGAAAGGTCATTCAG
CCAGAGAAATCAGTGGTAAAAACAGCAAATATAAATTTTTCTGGTGTGGT
GATGTTGCTGGTTATGATGGTGCTGGTATCCTTCTTGATGAAGCTTTTAT
CGAAAATGTTATATCAGTTGAACGTGTAAACAGTAGGATTATGTATATCT
GTATCATGATAGAGAAATCAATCATCCGTTTCTTCAGTGTCTCTGTACCT
CAAACTGGTCTTCCTGAATCTGAGAAAGACAAATTTTATAATGATCTCTT
GGCTCAAACGGCCATAACTCCAGCAAAGTAATTTTCAATAATATGTGGTG
A
Run BLAST on NCBI

protein sequence of TCONS_00039074-protein

>TCONS_00039074-protein ID=TCONS_00039074-protein|Name=TCONS_00039074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MKTKIFTNIRAGTLNVGTMKGRSGEIVDTVSRREISICAIQESRWKGHSA
REISGKNSKYKFFWCGDVAGYDGAGILLDEAFIENVISVERVNSRIMYIC
IMIEKSIIRFFSVSVPQTGLPESEKDKFYNDLLAQTAITPAK
Run BLAST on NCBI

transcript from alignment at sc0002006:25075..25887-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039074 ID=TCONS_00039074|Name=TCONS_00039074|organism=Clytia hemisphaerica|type=transcript|length=813bp|location=Sequence derived from alignment at sc0002006:25075..25887- (Clytia hemisphaerica)
GTGATCATGTATTGCACTGTGTCTTCCGGTGAGTTGGTATCTCTGTAAAA
ATACTCAGTCCTGCAACTGTGAGTAGGTTGACGACAGGAAGGACATCCGG
TCATAAAACTCATGCATCAACTCTTCTTCAAAGTCCTTTCTCTGTAACTC
AAGGTGTTTTCNTCATAAAACTCATGCATCAACTCTTCTTCAAAGTCCTT
TCTTTGTAACTCAAGGTGTTTTTCGTGTCAATGAGTGAATGGCTATACAT
AGTTAGTCGCGAACGGTTGCGTATTCTGTGGCGAGTAGCCTAATCTAGTG
TGCTGGGTAACTCAGAAGGGCTTTATTGACCCATGCATGTTACACATGGT
CCTGACAGCCAAATATGAAAACTAAAATATTTACAAATATTCGCGCTGGT
ACTTTGAATGTCGGAACCATGAAAGGTAGATCTGGAGAAATTGTAGACAC
AGTTTCACGACGCGAAATTTCAATCTGTGCGATTCAAGAATCTCGCTGGA
AAGGTCATTCAGCCAGAGAAATCAGTGGTAAAAACAGCAAATATAAATTT
TTCTGGTGTGGTGATGTTGCTGGTTATGATGGTGCTGGTATCCTTCTTGA
TGAAGCTTTTATCGAAAATGTTATATCAGTTGAACGTGTAAACAGTAGGA
TTATGTATATCTGTATCATGATAGAGAAATCAATCATCCGTTTCTTCAGT
GTCTCTGTACCTCAAACTGGTCTTCCTGAATCTGAGAAAGACAAATTTTA
TAATGATCTCTTGGCTCAAACGGCCATAACTCCAGCAAAGTAATTTTCAA
TAATATGTGGTGA

Coding sequence (CDS) from alignment at sc0002006:25075..25887-

>TCONS_00039074 ID=TCONS_00039074|Name=TCONS_00039074|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0002006:25075..25887- (Clytia hemisphaerica)
ATGAAAACTAAAATATTTACAAATATTCGCGCTGGTACTTTGAATGTCGG
AACCATGAAAGGTAGATCTGGAGAAATTGTAGACACAGTTTCACGACGCG
AAATTTCAATCTGTGCGATTCAAGAATCTCGCTGGAAAGGTCATTCAGCC
AGAGAAATCAGTGGTAAAAACAGCAAATATAAATTTTTCTGGTGTGGTGA
TGTTGCTGGTTATGATGGTGCTGGTATCCTTCTTGATGAAGCTTTTATCG
AAAATGTTATATCAGTTGAACGTGTAAACAGTAGGATTATGTATATCTGT
ATCATGATAGAGAAATCAATCATCCGTTTCTTCAGTGTCTCTGTACCTCA
AACTGGTCTTCCTGAATCTGAGAAAGACAAATTTTATAATGATCTCTTGG
CTCAAACGGCCATAACTCCAGCAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023522XLOC_023522Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039074-proteinTCONS_00039074-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039074-exon-sc0002006-1575043694:25735..25887TCONS_00039074-exon-sc0002006-1575043694:25735..25887Clytia hemisphaericaexon
TCONS_00039074-exon-sc0002006-1575043694:25075..25672TCONS_00039074-exon-sc0002006-1575043694:25075..25672Clytia hemisphaericaexon
TCONS_00039074-exon-sc0002006-1510915933:25735..25887TCONS_00039074-exon-sc0002006-1510915933:25735..25887Clytia hemisphaericaexon
TCONS_00039074-exon-sc0002006-1510915933:25075..25672TCONS_00039074-exon-sc0002006-1510915933:25075..25672Clytia hemisphaericaexon
TCONS_00039074-exon-sc0002006-1491911889:25735..25887TCONS_00039074-exon-sc0002006-1491911889:25735..25887Clytia hemisphaericaexon
TCONS_00039074-exon-sc0002006-1491911889:25075..25672TCONS_00039074-exon-sc0002006-1491911889:25075..25672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002006supercontigsc0002006:25075..25887 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.945881	0.820587	0.667025	0.65258	0.0988721	0	0.202518	0.172753	0	0.0683239	0	0	0.0870669	0.0452099	0.111506	0.0398877	0	0.302192	0	0.0728129	0.0756378	0.0926085	0.375259	0.160018	0.140557	0.421368	0.359019	0.0957886	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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