TCONS_00039073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039073
Unique NameTCONS_00039073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039073 ID=TCONS_00039073|Name=TCONS_00039073|organism=Clytia hemisphaerica|type=transcript|length=604bp
AGCACCAGAATACCCCTGTTCAttgctttgattttttcatttctttattt
tttaataggTGTCAGTGAATCTTACTGGAttactttgaaaatttattgca
aattttttgaagactGGAGACAACTGAAGCACTACAATCATCAATGAAGG
AAGATGTAAAAACTTTTATGGCAATGATGTCATACTCCAAATACATCAGA
TTATCATAAAATTAACGTTGCCGTGACACCATAATGTGAATCAGCAGATT
AAAGAGTCAAATCGAGTTTCAGATGTCAAGTCATGAAGATCACACTGGGT
TACACAGCAGGACGTATTTACAGTGCACTTGTATCGAGAAAACCTTTTTG
CAGAGTTCAAAATTCTGAATGTGCTGATGAAACAACCATTCCATATATTC
AGCTGGGACATACAGTACGTAATATTTGATTTTAATAGCTGTCAGTGAAT
CTCATTGGATTACTGTAACAATTGTCTGCAAATTTTCTGGAGCCTGGAAA
CAACTCAAGCACTACAACcatcaatgaaagaaaatataaaagctTTTGTG
ACAATGATGGCGTACTCCAAATACACCAGATTATCATAGGATTAACGTTG
CTTC
Run BLAST on NCBI

transcript from alignment at sc0002006:18667..19853-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039073 ID=TCONS_00039073|Name=TCONS_00039073|organism=Clytia hemisphaerica|type=transcript|length=1187bp|location=Sequence derived from alignment at sc0002006:18667..19853- (Clytia hemisphaerica)
AGCACCAGAATACCCCTGTTCATTGCTTTGATTTTTTCATTTCTTTATTT
TTTAATAGGTGTCAGTGAATCTTACTGGATTACTTTGAAAATTTATTGCA
AATTTTTTGAAGACTGGAGACAACTGAAGCACTACAATCATCAATGAAGG
AAGATGTAAAAACTTTTATGGCAATGATGTCATACTCCAAATACATCAGA
TTATCATAAAATTAACGTTGCCGTGACACCATAATGTGAATCAGCAGATT
AAAGAGTCAAATCGAGTTTCAGATGTCAAGTCATGAAGTAATACATCACC
TACTACTTATTTATTAATCTATTACGATGACGATTGCATAGAGTATGTTT
GATCCACGCAAGGCCTCTTGTTGGTTTGGCCTAAAAAGTTAATCCCTTTT
TGTATAATGTGAATAAAATTAGACATCCTTTTTATCTCATTAAAGTAGCA
TACACACGTAAGACAAGTAAAGATTCCCTCATTTTTGATAATATGAATTT
TCTTTATATTAAAAATGCGATTATTAGATTCAAACAATTTATGTGGCTTT
GTCTAACTTAGTAATTATGTTTAATTTGTTTAAAACAAACTTTTATTCAT
TTCAGGATCACACTGGGTTACACAGCAGGACGTATTTACAGTGCACTTGT
ATCGAGAAAACCTTTTTGCAGAGTTCAAAATTCTGAATGTGCTGATGAAA
CAACCATTCCATATATTCAGCTGGGACATACAGTACGTAATATTTGGTAA
AAAATGGTTTATTTTCATCAACCATTACTTCCTATAGAATACATGTCTGT
CAGTGATGAATAGGTTTTATCATATTTCAAAAATCATCTTAGACAAATTT
GTAAAAGGTACAGTGCCTCATGCAAATCATTATCTAATGTATCAAATGGT
GCCAAACTATAAGCGATTAATTAAGGTTGAATTCTTTCTTTAGGTATATT
AAATCAAATAAGCACCAGAATACCCTAGTTCATTGCTCTGATATTTTTAT
TGTTGCTTTAGATTTTAATAGCTGTCAGTGAATCTCATTGGATTACTGTA
ACAATTGTCTGCAAATTTTCTGGAGCCTGGAAACAACTCAAGCACTACAA
CCATCAATGAAAGAAAATATAAAAGCTTTTGTGACAATGATGGCGTACTC
CAAATACACCAGATTATCATAGGATTAACGTTGCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023521XLOC_023521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039073-exon-sc0002006-1575043694:19567..19853TCONS_00039073-exon-sc0002006-1575043694:19567..19853Clytia hemisphaericaexon
TCONS_00039073-exon-sc0002006-1575043694:19108..19248TCONS_00039073-exon-sc0002006-1575043694:19108..19248Clytia hemisphaericaexon
TCONS_00039073-exon-sc0002006-1575043694:18667..18842TCONS_00039073-exon-sc0002006-1575043694:18667..18842Clytia hemisphaericaexon
TCONS_00039073-exon-sc0002006-1510915933:19567..19853TCONS_00039073-exon-sc0002006-1510915933:19567..19853Clytia hemisphaericaexon
TCONS_00039073-exon-sc0002006-1510915933:19108..19248TCONS_00039073-exon-sc0002006-1510915933:19108..19248Clytia hemisphaericaexon
TCONS_00039073-exon-sc0002006-1510915933:18667..18842TCONS_00039073-exon-sc0002006-1510915933:18667..18842Clytia hemisphaericaexon
TCONS_00039073-exon-sc0002006-1491911889:19567..19853TCONS_00039073-exon-sc0002006-1491911889:19567..19853Clytia hemisphaericaexon
TCONS_00039073-exon-sc0002006-1491911889:19108..19248TCONS_00039073-exon-sc0002006-1491911889:19108..19248Clytia hemisphaericaexon
TCONS_00039073-exon-sc0002006-1491911889:18667..18842TCONS_00039073-exon-sc0002006-1491911889:18667..18842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002006supercontigsc0002006:18667..19853 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81457	2.02712	0.793759	0.497466	0.36337	0.191427	0.461896	0.324316	0.151374	0.0937507	0.27299	0.358906	0.298673	0.434244	0.204004	0.492588	0.166199	0.345544	0.552897	0.499552	0.260521	0	1.60348	1.28153	0.0964326	0.258191	5.70295	2.79972	0	0.406273
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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