TCONS_00039071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039071
Unique NameTCONS_00039071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039071 ID=TCONS_00039071|Name=TCONS_00039071|organism=Clytia hemisphaerica|type=transcript|length=341bp
CTTAGATCGATTTTGAGATTGTAAAAGTTCGTAATCTTGTTCTttataaa
tcatgaaaaagtatttttttctgccTTGATTGAACGCTACAtattatgtt
tatgtttttggttTACGGTGTTTCATTATTGTATCAATTGAGAAGTACTT
CGTTATTTGAAACTCTTGTACATATATCGCTGTACAGTATACTGTTCATT
TTAATTCATCATACCAAATCAATAACTGTTTCAAAACAGTTTTGGGAACA
TGGTTTgacaaaaagtaaatatcacaCTCTCGTTTgataggttttaaggg
gtggTCCTTAGTGAATTTCCTTTGAAATCACTTAGTATATT
Run BLAST on NCBI

transcript from alignment at sc0002005:762..1102

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039071 ID=TCONS_00039071|Name=TCONS_00039071|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at sc0002005:762..1102 (Clytia hemisphaerica)
AATATACTAAGTGATTTCAAAGGAAATTCACTAAGGAccaccccttaaaa
cctatcAAACGAGAGtgtgatatttactttttgtcAAACCATGTTCCCAA
AACTGTTTTGAAACAGTTATTGATTTGGTATGATGAATTAAAATGAACAG
TATACTGTACAGCGATATATGTACAAGAGTTTCAAATAACGAAGTACTTC
TCAATTGATACAATAATGAAACACCGTAaaccaaaaacataaacataata
TGTAGCGTTCAATCAAggcagaaaaaaatactttttcatgatttataaAG
AACAAGATTACGAACTTTTACAATCTCAAAATCGATCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023519XLOC_023519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039071-exon-sc0002005-1491911889:762..1102TCONS_00039071-exon-sc0002005-1491911889:762..1102Clytia hemisphaericaexon
TCONS_00039071-exon-sc0002005-1510915933:762..1102TCONS_00039071-exon-sc0002005-1510915933:762..1102Clytia hemisphaericaexon
TCONS_00039071-exon-sc0002005-1575043694:762..1102TCONS_00039071-exon-sc0002005-1575043694:762..1102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002005supercontigsc0002005:762..1102 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.26791	1.22928	4.32927	1.51984	2.71409	1.43207	1.21667	3.244	2.73554	3.32239	0.562317	1.45419	2.53497	2.81564	1.72159	2.25365	0.215899	0	1.87647	2.17008	2.63872	4.49854	1.57753	2.24061	0.288566	0.518276	3.4216	4.87637	3.86824	5.89816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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