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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039066 ID=TCONS_00039066|Name=TCONS_00039066|organism=Clytia hemisphaerica|type=transcript|length=923bp
TCCACGCAACCCGATGAATCAACGTCGTCGcgagaaaagtaaaaaatctt
ccaaatcGTCGAAAAGTCCTTTTTGGTCCCACCCTATGGGCACGCAACGT
CTTATGGACATTCAATGGACGGCTTTAAAACCTTTGGACGTCCTAGAAAA
TTATATATATCTATATATAATATCTCTAGAGCAGAACGACTTCGAATGCG
AAATGAGAACGAGAAGCTATCAGGTGAATCATCACTCCCATGGTGTGGAT
ACGCAGACGACCTGATACTTTTCTTGACTGATCTTTCATCTCTACAATCA
GTGTCAACACTGCTAGACAACGTATTCGTGAAATTTGGTCTTCGAATCAA
CGAAACCTAAACCGAGACGATGATTCTCAATCACTGCTACCTCGAGACAA
ACTATCCTGATAGCATCATTGATATTCGCAATGTCCCGTTGAAAAATTCA
GGCCAGTTCAAATATCTTGGTTCGCACATCTCTCCAAATGCGCCTAGTAC
CGGAGACATTGAAATCAACTATTGCATTCAGATGGCAATTGGAAAATTCG
CTAGTATGACAAACCTCCTTCAGAATCATGGAATTCATCTATCTACAAGA
GTTAAACTTTAGGGAATTGTCATTTAGGCTGTgcgtttttcttcactttt
acCACCGAATTAAAGAATTGGATTGACCTATGTATATATTTAgctgttat
tttattatttcagttTGCTTGTAGATTCTCTCTTCATTTCAACCAAATGT
TTGTGTAACGTTCTAAGATTCTTTCTTTGGAATTTAGATTGCTTAAAATC
TCAGGTGAGTTAAGGCAAGTTCCAAACATATTTTGcgtgacgcgcaccgc
ttcccattgttccttaactttcgtatatagctcaaaagaagcgtattaag
gagaggatttcggaaagtgctgg Run BLAST on NCBI transcript from alignment at sc0002003:28821..32363- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039066 ID=TCONS_00039066|Name=TCONS_00039066|organism=Clytia hemisphaerica|type=transcript|length=3543bp|location=Sequence derived from alignment at sc0002003:28821..32363- (Clytia hemisphaerica)
TCCACGCAACCCGATGAATCAACGTCGTCGCGAGAAAAGTAAAAAATCTT
CCAAATCGTCGAAAAGGTAGAAACAAGTAGACTGTATCTTTGTATGGTAC
AGTTTTTTGATCTGAAACGTGAAGGAAAGATGTTGCTCATAACAAGTAAT
AAAAGGAGCTTTTATCGTACGAATCAATCCTTGATTGAGAGAAATAGATC
GTCGTTTTTCTAATTCACAAAGGAATCGATAAGATTGATGGTAATGGATT
CGCAATTATTACGTCACTATTACGTCACCGTTACGTTACATGGTACGGAT
AAAATCGAAACAAAAAATCAACAAAAAATATGAAACCTAGCTTGGAGACT
TGCACAGTTTGAAACTAAAGGGAAAATCAAATGGTTTGAGATATTTGGCA
TGTGAACTCCCACTAGTCCTGAGCAAAATCTCAAAATATTTTTACCTACT
ATTTTTCAAAGTTGAGATACAGTTTTTGACTTTAAGAAAACAATAACATT
CCAATGTGAAAACCCATTTTTGGAATTTCAAATTGTGATATCTTGACTTC
AGAAAGTATTCAGGCAAAAATGTTTGGAGGTTATACCTCAAGGTTTCTAC
CACAGAATGTTTCTGCAGGCTGAAGATTTCAAACCATCTGATTATCCCTT
AAAATGTTTTAAACTGTTAAAATGACGTTTTTTGATAAAAATTCCAAAAT
GACATTGGCAAAAATGCGAACAATTGAATTTTTTTTTAGACCTGGAATAA
TACGATCTATAACAATTATTGTATGAGTTTTAGATTTTTAATTGTAATTA
GAAATACTCTTTATATTTTGGAAAATCAAGAAGAATCGGTTTCCACCAAA
ATCAAAGATCATATATATTGTCCATGACGCTTTAAGAGTCTGATAGATTT
AGCTAAAAAGGCTCAAATCTTGAGATAAATCATATATGGCTGAAAGTTGG
CATGAAAAAAAACCAGTCGATTGGACCCTCTTTACGGTATTTTATGATAA
CGCCAATCTTCAGTACAAACCCCTGTAAACTGTCTTATCTGTAAGTTCGT
GTTGTTGTTGAAATTTCGTAATTAGACCCCCCTCCCACCTTAAAATGGTT
TGATCAAAAGTTGTGACCGAAAACTTTTCCCAGGTTGCCCTGAAGGTTTT
TCTCATTATTAATGATGTTCTAAGATTAAAAAATCACTCGTGTGGAAATG
ATAATTATAGGACAGTTATTGAAGAAGTTGATTTTCTTCTAATTCATTTT
CTATCCTCATTTTCAGATTTCTTTCAGTTTTTTTTTTTCAGTTTTTGAAT
ATCCTCTCGAGATTATCTAACAAGGGCAACACCAATAATTCGAGATTTAT
AAAAAGTTACGGCCTATTTTTTGTCTCCGTTGTAGATCATTTTGAGACAA
ACTCCAATATGCACTATTTATTGTATCTCGTTATTTTTATTTTTTTGCCG
GTTGGTTCGAAACGCAGGACACAGGACCCAGGAGGCAGGACACAGGACGC
AGGTCAGTGCTGACAGGTCAGCTTTAATTGCTATAAAGGACAAAGAAAAT
GTTTGAAAAACACTTGTAATCGTTAGAAATATCATTCTGTCTAGAACCTT
TTTAAAGGTCAAAATCTATCCACATGCTTGCCACGTGCTTTTGCATTTTG
TGCCGTGTATAACACGGACCTGTAATACTTGTATTATATATTACACATAA
ATCACGCATGTATAATAGCAGTTGTCTTTTCAATGTCATTGGCATGTTAC
ATATGTTATATACAAAATACATGTGTTAAAAATATTTATCTCATCTTTAA
ACAGCCCCTGACAGGAAAATAGCTATTTCACAATCACTTTATCATATCTC
ATTATATCTCCTGCATCACCTTGGGTATGATAACAAGAATTGACTAAAAT
AGCGTCAAAGTTTTGTATTTTATTAATATTATTTTATCAATATTTGTTCG
TAATTTTAATGAAAATGACGTCACTATTTTCATATCTCTAAAACAGCTCT
CTTGGAGCATTTAATGTTTTCAAAATATTTAAATCTATATCTACTTGCAC
CGTCAGCATCCTATTGAGTATGAAAAAAACATTTTGTTGTAAACTGATGT
ACACACCTTGTATTTTGTGATAGCGTCATCATTTACATAATTTTAATGTC
ATTTTGTCAATATTTGGGATTGATGGCTTGTCATTTAAAAATCNTTTAAT
GTCATTTTGTCAATATTTAGGATTGATGGCTAGCCATTTAAAAATTTTCT
AAATAGCGTATTTTGTATAATATTTAATTTTTCCATTTCGTATAATGTTT
TTAGAAACATTTTATGAATTATATGTTACGAATGTGTTACAATTTTCCGG
TCTGTAGTTTGTATGACCTGCGTCCTGTGTCCTGTCTCCTGTGTTTCGAA
CCAACCGTTTTTTTGCCTAAGGTCAAATTTTAGAGCAAATTATTTTTGAT
TTTTATTGAATTAGCGAAGATTAGAATTATGAAGGATCCATTAAAAAGTA
AAAGTAACTCTCCTTGACTCTCCTTTAAGGGCCTTTAAGGGTAGGAAAAA
TCAGAATATTAACTCTCAGTCCCATTAACAAAAAACATCGAAATTTGATT
GAAATAGACCCAATAAAGGACGGGTTGTAAAATTCACAAAATTTTCTAAT
CATTTTCCAATCATTTCCTCCTTTCTTCCTTTCAAGTCCTTTTTGGTCCC
ACCCTATGGGCACGCAACGTCTTATGGACATTCAATGGACGGCTTTAAAA
CCTTTGGACGTCCTAGAAAATTATATATATCTATATATAATATCTCTAGA
GCAGAACGACTTCGAATGCGAAATGAGAACGAGAAGCTATCAGGTGAATC
ATCACTCCCATGGTGTGGATACGCAGACGACCTGATACTTTTCTTGACTG
ATCTTTCATCTCTACAATCAGTGTCAACACTGCTAGACAACGTATTCGTG
AAATTTGGTCTTCGAATCAACGAAACCTAAACCGAGACGATGATTCTCAA
TCACTGCTACCTCGAGACAAACTATCCTGATAGCATCATTGATATTCGCA
ATGTCCCGTTGAAAAATTCAGGCCAGTTCAAATATCTTGGTTCGCACATC
TCTCCAAATGCGCCTAGTACCGGAGACATTGAAATCAACTATTGCATTCA
GATGGCAATTGGAAAATTCGCTAGTATGACAAACCTCCTTCAGAATCATG
GAATTCATCTATCTACAAGAGTTAAACTTTAGGGAATTGTCATTTAGGCT
GTGCGTTTTTCTTCACTTTTACCACCGAATTAAAGAATTGGATTGACCTA
TGTATATATTTAGCTGTTATTTTATTATTTCAGTTTGCTTGTAGATTCTC
TCTTCATTTCAACCAAATGTTTGTGTAACGTTCTAAGATTCTTTCTTTGG
AATTTAGATTGCTTAAAATCTCAGGTGAGTTAAGGCAAGTTCCAAACATA
TTTTGCGTGACGCGCACCGCTTCCCATTGTTCCTTAACTTTCGTATATAG
CTCAAAAGAAGCGTATTAAGGAGAGGATTTCGGAAAGTGCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039066-exon-sc0002003-1575043694:32298..32363 | TCONS_00039066-exon-sc0002003-1575043694:32298..32363 | Clytia hemisphaerica | exon |
| TCONS_00039066-exon-sc0002003-1575043694:28821..29677 | TCONS_00039066-exon-sc0002003-1575043694:28821..29677 | Clytia hemisphaerica | exon |
| TCONS_00039066-exon-sc0002003-1510915933:32298..32363 | TCONS_00039066-exon-sc0002003-1510915933:32298..32363 | Clytia hemisphaerica | exon |
| TCONS_00039066-exon-sc0002003-1510915933:28821..29677 | TCONS_00039066-exon-sc0002003-1510915933:28821..29677 | Clytia hemisphaerica | exon |
| TCONS_00039066-exon-sc0002003-1491911889:32298..32363 | TCONS_00039066-exon-sc0002003-1491911889:32298..32363 | Clytia hemisphaerica | exon |
| TCONS_00039066-exon-sc0002003-1491911889:28821..29677 | TCONS_00039066-exon-sc0002003-1491911889:28821..29677 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002003 | supercontig | sc0002003:28821..32363 - |
Blast
The following BLAST results are available for this feature:
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