TCONS_00039064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039064
Unique NameTCONS_00039064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039064 ID=TCONS_00039064|Name=TCONS_00039064|organism=Clytia hemisphaerica|type=transcript|length=315bp
CGAGACTCCATCAAGAAATGCTCTAtcaaaaattacagaaattttAGATA
CATCGACTCTTCAAGCCCCGCACTTTAATATCACACAATCAGACTCTGTT
ACACAAAACAATAGAACCAAAGCAAAAGGTCAACGCCAGAAAAAAGTAGC
ATNCTCTGTTACACAAAACAATCGAACCAAAGCAAAAGGTCAACGCCAGA
AAAAAGTAGCATTTTCTTCGACAGAAGATAAATTCTTGAAACTAGGAATT
CAGAAATATGGGTGTGCATGGTCAAAGATTCTGGCTGATCCTGAATTCTC
ATTTCATTCGTCAAG
Run BLAST on NCBI

protein sequence of TCONS_00039064-protein

>TCONS_00039064-protein ID=TCONS_00039064-protein|Name=TCONS_00039064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
ETPSRNALSKITEILDTSTLQAPHFNITQSDSVTQNNRTKAKGQRQKKVA
XSVTQNNRTKAKGQRQKKVAFSSTEDKFLKLGIQKYGCAWSKILADPEFS
FHSS
Run BLAST on NCBI

transcript from alignment at sc0002002:11713..12027

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039064 ID=TCONS_00039064|Name=TCONS_00039064|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at sc0002002:11713..12027 (Clytia hemisphaerica)
CTTGACGAATGAAATGAGAATTCAGGATCAGCCAGAATCTTTGACCATGC
ACACCCATATTTCTGAATTCCTAGTTTCAAGAATTTATCTTCTGTCGAAG
AAAATGCTACTTTTTTCTGGCGTTGACCTTTTGCTTTGGTTCGATTGTTT
TGTGTAACAGAGNATGCTACTTTTTTCTGGCGTTGACCTTTTGCTTTGGT
TCTATTGTTTTGTGTAACAGAGTCTGATTGTGTGATATTAAAGTGCGGGG
CTTGAAGAGTCGATGTATCTaaaatttctgtaatttttgaTAGAGCATTT
CTTGATGGAGTCTCG

Coding sequence (CDS) from alignment at sc0002002:11713..12027

>TCONS_00039064 ID=TCONS_00039064|Name=TCONS_00039064|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0002002:11713..12027 (Clytia hemisphaerica)
TGACGAATGAAATGAGAATTCAGGATCAGCCAGAATCTTTGACCATGCAC
ACCCATATTTCTGAATTCCTAGTTTCAAGAATTTATCTTCTGTCGAAGAA
AATGCTACTTTTTTCTGGCGTTGACCTTTTGCTTTGGTTCGATTGTTTTG
TGTAACAGAGNATGCTACTTTTTTCTGGCGTTGACCTTTTGCTTTGGTTC
TATTGTTTTGTGTAACAGAGTCTGATTGTGTGATATTAAAGTGCGGGGCT
TGAAGAGTCGATGTATCTaaaatttctgtaatttttgaTAGAGCATTTCT
TGATGGAGTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023512XLOC_023512Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039064-proteinTCONS_00039064-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039064-exon-sc0002002-1491911889:11713..12027TCONS_00039064-exon-sc0002002-1491911889:11713..12027Clytia hemisphaericaexon
TCONS_00039064-exon-sc0002002-1510915933:11713..12027TCONS_00039064-exon-sc0002002-1510915933:11713..12027Clytia hemisphaericaexon
TCONS_00039064-exon-sc0002002-1575043694:11713..12027TCONS_00039064-exon-sc0002002-1575043694:11713..12027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002002supercontigsc0002002:11713..12027 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00385	0	0.378871	0	0	0	0	0	0.845928	0.698545	0	0.222854	0.222544	0	0.760028	0.203907	0	1.54481	0.355706	0	0.323527	0.946832	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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