TCONS_00039061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039061
Unique NameTCONS_00039061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039061 ID=TCONS_00039061|Name=TCONS_00039061|organism=Clytia hemisphaerica|type=transcript|length=930bp
GAAATCCTATAATTTTGTTCGAAAAATTATTTCCCCCCAAGATTTTGTTC
TAAAGTGAAAACATTTTATAAGGACTCACAAAAAGCAAATTAATCATTTC
CCTCCAAAGATTCGTATTGGTGGTTCACTGGTTAATGAAAATCATAAGAT
TTATTGTACTCAGAAAAATAATTTTCACTTTGAAAGAATGAATTCAAGAC
TTGCAGGAGGTAGACCGTGTAACTGCACTAGCTATCGGTGTAATGGAGCG
ATCCGTTCATCAAAGACAATTTATCGCCATGCAAAAACTGATGCTTCATA
TGCCATTCAAAAAACCACAGCACCTCTTGAAACTCAAAACATTGACTGTC
CGTATTACCCTGGACTTTTTGAAACCCATCCAGCAGCTAAGACACCTCTT
TTCCTTGATGCTGATATCTCCGTCTTAGACCATATCTTTTTGGAGTTTCG
TAAATTTGTTTCGCATCCTAGCTATGCTAAGGCAACTGTTTCTGAGAGCT
TTCGCAACGATAAACTTTTTAAATTACCCAAACCCAACGAATCTTGTTCA
TCTTATGAAGAGGCAAAAGCCAAGATCAAAGACTTTCTTATACCGATCCA
GACTTTCAAGGCGTGTGAAAAGGACTGCGTGGTTTTTAGAAATGAACTCT
CTTCTGCTAAAACGTGTCCGAAGTGTGGAAGTAGTAAAACCAAATCCAAA
ACATTCAAATACTTTCCTATCGGACCGCGAATCGCCCGTTTGTATCAAAA
TGAAAACTTGGTGCGCATATTGCAGGCTCATACTACCCGCCCGAAGGATG
GATATTTGCGTGACATATGGGATACCAGCAGATGGGAGAATTGGTTTGAC
GAGGATGGAGAGTTTAAAGGTGATGACGACGGCGTGGTTTTAAATTTTTG
CAGTGATGGTGTCAACCCGTTCAAAACGAT
Run BLAST on NCBI

transcript from alignment at sc0002002:29692..31015-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039061 ID=TCONS_00039061|Name=TCONS_00039061|organism=Clytia hemisphaerica|type=transcript|length=1324bp|location=Sequence derived from alignment at sc0002002:29692..31015- (Clytia hemisphaerica)
GAAATCCTATAATTTTGTTCGAAAAATTATTTCCCCCCAAGATTTTGTTC
TAAAGTGAAAACATTTTATAAGGACTCACAAAAAGCAAATTAATCATTTC
CCTCCAAAGATTCGTATTGGTGGTTCACTGGTTAATGAAAATCATAAGAT
TTATTGTACTCAGAAAAATAATTTTCACTTTGAAAGAATGAATTCAAGAC
TTGCAGGAGGTAAGAAAATTTTACTTAACTTTAATGAAGTGGCATCGTGT
TGTCGACAATGTGTTTTGTTTACCAACTGAATAACTGTCGTTCTTGAAGC
AATTTTGATCGAATGTGGGCTTACGATCTTTTGTAAAATATCCGTTGACC
ATATTTGGTCATAAGTATTAAAAAACCAATCAGCGTTCGTAATTCTTTTT
ATTGACACTCCCTGGGGCATGTACTGTTCATTCAGAGTGTATCATTTTTA
ACCTCCATGCGCCTTTGTTTTGGTAAAAATTGAAAATTTAAAATGTCAGT
CCAATTTTCAGCAGCGAAGCAATCTTGTCGGTCGGCAAGAGTACCCCCGG
TTGTGGTTGTTACAAACAAAGCAAACAAATTATTTACTTCTTTTCAATTT
CAGGTAGACCGTGTAACTGCACTAGCTATCGGTGTAATGGAGCGATCCGT
TCATCAAAGACAATTTATCGCCATGCAAAAACTGATGCTTCATATGCCAT
TCAAAAAACCACAGCACCTCTTGAAACTCAAAACATTGACTGTCCGTATT
ACCCTGGACTTTTTGAAACCCATCCAGCAGCTAAGACACCTCTTTTCCTT
GATGCTGATATCTCCGTCTTAGACCATATCTTTTTGGAGTTTCGTAAATT
TGTTTCGCATCCTAGCTATGCTAAGGCAACTGTTTCTGAGAGCTTTCGCA
ACGATAAACTTTTTAAATTACCCAAACCCAACGAATCTTGTTCATCTTAT
GAAGAGGCAAAAGCCAAGATCAAAGACTTTCTTATACCGATCCAGACTTT
CAAGGCGTGTGAAAAGGACTGCGTGGTTTTTAGAAATGAACTCTCTTCTG
CTAAAACGTGTCCGAAGTGTGGAAGTAGTAAAACCAAATCCAAAACATTC
AAATACTTTCCTATCGGACCGCGAATCGCCCGTTTGTATCAAAATGAAAA
CTTGGTGCGCATATTGCAGGCTCATACTACCCGCCCGAAGGATGGATATT
TGCGTGACATATGGGATACCAGCAGATGGGAGAATTGGTTTGACGAGGAT
GGAGAGTTTAAAGGTGATGACGACGGCGTGGTTTTAAATTTTTGCAGTGA
TGGTGTCAACCCGTTCAAAACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023509XLOC_023509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039061-exon-sc0002002-1575043694:30807..31015TCONS_00039061-exon-sc0002002-1575043694:30807..31015Clytia hemisphaericaexon
TCONS_00039061-exon-sc0002002-1575043694:29692..30412TCONS_00039061-exon-sc0002002-1575043694:29692..30412Clytia hemisphaericaexon
TCONS_00039061-exon-sc0002002-1510915933:30807..31015TCONS_00039061-exon-sc0002002-1510915933:30807..31015Clytia hemisphaericaexon
TCONS_00039061-exon-sc0002002-1510915933:29692..30412TCONS_00039061-exon-sc0002002-1510915933:29692..30412Clytia hemisphaericaexon
TCONS_00039061-exon-sc0002002-1491911889:30807..31015TCONS_00039061-exon-sc0002002-1491911889:30807..31015Clytia hemisphaericaexon
TCONS_00039061-exon-sc0002002-1491911889:29692..30412TCONS_00039061-exon-sc0002002-1491911889:29692..30412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002002supercontigsc0002002:29692..31015 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.169245	0	0	0	0.0769463	0.00236002	0	0	0	0	0.0653779	0	0	0.068928	0.131574	0	0	0.10667	0	0	0.149396	0	0.0691363	4.20107e-07	0	0	0	0.0686978	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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