TCONS_00039060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039060
Unique NameTCONS_00039060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039060 ID=TCONS_00039060|Name=TCONS_00039060|organism=Clytia hemisphaerica|type=transcript|length=2690bp
GAATTTTTCAATCGCTTTCTTGGCAACATTCTGACAAATGAAAAAAATTA
TTCACTTATTAGAAGATTTCTGTATATAGATGGAGGAAAAAAATGACATG
CCAAGACTTTTCTTCGAAAATGAAACATCCCCAACCCCGTACATGTATGC
GGAAGGTATATAAGTTTAAAATGAGATTAAATTTCAACAGAAAAGACCAA
CCAACTCAATTATTAAAGATCTGAAGTATTACATACCAAATAAAGTGTAT
GGGCAGCAGAATAATCTGGCCTTCTTCTGTCGAAATAGTCCTGAAGCACG
TAAGATTTTCTGTTGCATTGGCAGAGTGGTACTGTGTCCTTCCATTGGTT
ATAAAAATTTAAAAGAAATGCGTATGATGGTGCTTCATTGGTGTGTGGGT
CTTGAGCGGTAGATTGTTCGGTGGATGGTTCGGATACTTCGGATGGTTCT
GTTAGTTCGGTTGGTTCGGTATGGTCTGTAGCTGTAGCGTTTGAAGTTTG
CGGCGGGAATAAGTTTGTAAAATTGTGTGAATTGTAGTGCGTAGGTGTAA
ATGGCGAAGGAAATCTTGTTGGATGATGAAAGGATGGAAAATACCAATTT
TGCTGTTGCATACTATTATGTTCGAAATCTTTGCCCGGAGGTGTTATCAA
AATGTTTCCATTCCCGGTGGCACTGGCTGATGACATGGCTGCTTCCAATC
TCGGTATGAACAAAAATGAAGAATAATGAATAAGATCTCAAGAATATTTT
CGATGAATCGAACGATAAAAATTCGAAAATATATTGTCTGGCAATATTCG
TTCGAAAAAATATTGACTACCTATAATTTCGTTCGAAAAAATATTGACTA
ACTATAATTTCGTTCGAAAGATTATTGACTGCCTATATTTTTGCTCGAAA
AATTATTGACTGCCTATACTTTAGCTCGAAAAAATATTGAAATCCTATAA
TTTTGTTCGAAAAATTATTTCCCCCCAAGATTTTGTTCTAAAGTGAAAAC
ATTTTATAAGGACTCACAAAAAGCAAATTAATCATTTCCCTCCAAAGATT
CGTATTGGTGGTTCACTGGTTAATGAAAATCATAAGATTTATTGTACTCA
GAAAAATAATTTTCACTTTGAAAGAATGAATTCAAGACTTGCAGGAGGTA
AGAAAATTTTACTTAACTTTAATGAAGTGGCATCGTGTTGTCGACAATGT
GTTTTGTTTACCAACTGAATAACTGTCGTTCTTGAAGCAATTTTGATCGA
ATGTGGGCTTACGATCTTTTGTAAAATATCCGTTGACCATATTTGGTCAT
AAGTATTAAAAAACCAATCAGCGTTCGTAATTCTTTTTATTGACACTCCC
TGGGGCATGTACTGTTCATTCAGAGTGTATCATTTTTAACCTCCATGCGC
CTTTGTTTTGGTAAAAATTGAAAATTTAAAATGTCAGTCCAATTTTCAGC
AGCGAAGCAATCTTGTCGGTCGGCAAGAGTACCCCCGGTTGTGGTTGTTA
CAAACAAAGCAAACAAATTATTTACTTCTTTTCAATTTCAGGTAGACCGT
GTAACTGCACTAGCTATCGGTGTAATGGAGCGATCCGTTCATCAAAGACA
ATTTATCGCCATGCAAAAACTGATGCTTCATATGCCATTCAAAAAACCAC
AGCACCTCTTGAAACTCAAAACATTGACTGTCCGTATTACCCTGGACTTT
TTGAAACCCATCCAGCAGCTAAGACACCTCTTTTCCTTGATGCTGATATC
TCCGTCTTAGACCATATCTTTTTGGAGTTTCGTAAATTTGTTTCGCATCC
TAGCTATGCTAAGGCAACTGTTTCTGAGAGCTTTCGCAACGATAAACTTT
TTAAATTACCCAAACCCAACGAATCTTGTTCATCTTATGAAGAGGCAAAA
GCCAAGATCAAAGACTTTCTTATACCGATCCAGACTTTCAAGGCGTGTGA
AAAGGACTGCGTGGTTTTTAGAAATGAACTCTCTTCTGCTAAAACGTGTC
CGAAGTGTGGAAGTAGTAAAACCAAATCCAAAACATTCAAATACTTTCCT
ATCGGACCGCGAATCGCCCGTTTGTATCAAAATGAAAACTTGGTGCGCAT
ATTGCAGGCTCATACTACCCGCCCGAAGGATGGATATTTGCGTGACATAT
GGGATACCAGCAGATGGGAGAATTGGTTTGACGAGGATGGAGAGTTTAAA
GGTGATGACGACGGCGTGGTTTTAAATTTTTGCAGTGATGGTGTCAACCC
GTTCAAAACGATGCACCACGTCTACTCGATGTGGCCACTGATGTTATCGA
TCCTTAATTCTCCGCCCGCTCTGCGAAAATCTGTTGGTGGCATTATGCTT
TTTGGAACTATCCCTGGCAACGGCAGAAAGGAAGCCTTCCACGTGGATCC
CTATTTCGAAATTTTGGTTGATGAACTAATGGTACTTTCAGATTGTCAAA
CTTTCCACCCGGGATATATGGAAGCACCCGTGAGAATCAAAGTACGCCTC
CTGCAATACGTTTTGGATTTCCCTGCAATCTCTAAAGTACTTCAGCAACC
AGCCGCTGGTGGACTCAAGGCCTGTCCTTGGTGCAAATTAGAAGGTTGTT
ACTGTCATGCTCTGAATAAAACCGTATATATCAACATTCGAAGACCCAAC
ACACTGTCTTCGCAAGAGCAAGTCGTTTTCAAAAGTCGAG
Run BLAST on NCBI

transcript from alignment at sc0002002:28505..31953-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039060 ID=TCONS_00039060|Name=TCONS_00039060|organism=Clytia hemisphaerica|type=transcript|length=3449bp|location=Sequence derived from alignment at sc0002002:28505..31953- (Clytia hemisphaerica)
GAATTTTTCAATCGCTTTCTTGGCAACATTCTGACAAATGAAAAAAATTA
TTCACTTATTAGAAGATTTCTGTATATAGATGGAGGAAAAAAATGACATG
CCAAGACTTTTCTTCGAAAATGAAACATCCCCAACCCCGTACATGTATGC
GGAAGGTATATAAGTTTAAAATGAGATTAAATTTCAACAGAAAAGACCAA
CCAACTCAATTATTAAAGATCTGAAGTATTACATACCAAATAAAGTGTAT
GGGCAGCAGAATAATCTGGCCTTCTTCTGTCGAAATAGTCCTGAAGCACG
TAAGATTTTCTGTTGCATTGGCAGAGTGGTACTGTGTCCTTCCATTGGTT
ATAAAAATTTAAAAGAAATGCGTATGATGGTGCTTCATTGGTGTGTGGGT
CTTGAGCGGTAGATTGTTCGGTGGATGGTTCGGATACTTCGGATGGTTCT
GTTAGTTCGGTTGGTTCGGTATGGTCTGTAGCTGTAGCGTTTGAAGTTTG
CGGCGGGAATAAGTTTGTAAAATTGTGTGAATTGTAGTGCGTAGGTGTAA
ATGGCGAAGGAAATCTTGTTGGATGATGAAAGGATGGAAAATACCAATTT
TGCTGTTGCATACTATTATGTTCGAAATCTTTGCCCGGAGGTGTTATCAA
AATGTTTCCATTCCCGGTGGCACTGGCTGATGACATGGCTGCTTCCAATC
TCGGTATGAACAAAAATGAAGAATAATGAATAAGATCTCAAGAATATTTT
CGATGAATCGAACGATAAAAATTCGAAAATATATTGTCTGGCAATATTCG
TTCGAAAAAATATTGACTACCTATAATTTCGTTCGAAAAAATATTGACTA
ACTATAATTTCGTTCGAAAGATTATTGACTGCCTATATTTTTGCTCGAAA
AATTATTGACTGCCTATACTTTAGCTCGAAAAAATATTGAAATCCTATAA
TTTTGTTCGAAAAATTATTTCCCCCCAAGATTTTGTTCTAAAGTGAAAAC
ATTTTATAAGGACTCACAAAAAGCAAATTAATCATTTCCCTCCAAAGATT
CGTATTGGTGGTTCACTGGTTAATGAAAATCATAAGATTTATTGTACTCA
GAAAAATAATTTTCACTTTGAAAGAATGAATTCAAGACTTGCAGGAGGTA
AGAAAATTTTACTTAACTTTAATGAAGTGGCATCGTGTTGTCGACAATGT
GTTTTGTTTACCAACTGAATAACTGTCGTTCTTGAAGCAATTTTGATCGA
ATGTGGGCTTACGATCTTTTGTAAAATATCCGTTGACCATATTTGGTCAT
AAGTATTAAAAAACCAATCAGCGTTCGTAATTCTTTTTATTGACACTCCC
TGGGGCATGTACTGTTCATTCAGAGTGTATCATTTTTAACCTCCATGCGC
CTTTGTTTTGGTAAAAATTGAAAATTTAAAATGTCAGTCCAATTTTCAGC
AGCGAAGCAATCTTGTCGGTCGGCAAGAGTACCCCCGGTTGTGGTTGTTA
CAAACAAAGCAAACAAATTATTTACTTCTTTTCAATTTCAGGTAGACCGT
GTAACTGCACTAGCTATCGGTGTAATGGAGCGATCCGTTCATCAAAGACA
ATTTATCGCCATGCAAAAACTGATGCTTCATATGCCATTCAAAAAACCAC
AGCACCTCTTGAAACTCAAAACATTGACTGTCCGTATTACCCTGGACTTT
TTGAAACCCATCCAGCAGCTAAGACACCTCTTTTCCTTGATGCTGATATC
TCCGTCTTAGACCATATCTTTTTGGAGTTTCGTAAATTTGTTTCGCATCC
TAGCTATGCTAAGGCAACTGTTTCTGAGAGCTTTCGCAACGATAAACTTT
TTAAATTACCCAAACCCAACGAATCTTGTTCATCTTATGAAGAGGCAAAA
GCCAAGATCAAAGACTTTCTTATACCGATCCAGACTTTCAAGGCGTGTGA
AAAGGACTGCGTGGTTTTTAGAAATGAACTCTCTTCTGCTAAAACGTGTC
CGAAGTGTGGAAGTAGTAAAACCAAATCCAAAACATTCAAATACTTTCCT
ATCGGACCGCGAATCGCCCGTTTGTATCAAAATGAAAACTTGGTGCGCAT
ATTGCAGGCTCATACTACCCGCCCGAAGGATGGATATTTGCGTGACATAT
GGGATACCAGCAGATGGGAGAATTGGTTTGACGAGGATGGAGAGTTTAAA
GGTGATGACGACGGCGTGGTTTTAAATTTTTGCAGTGATGGTGTCAACCC
GTTCAAAACGATGCACCACGTCTACTCGATGTGGCCACTGATGTTATCGA
TCCTTAATTCTCCGCCCGCTCTGCGAAAATCTGTTGGTGGCATTATGCTT
TTTGGAACTATCCCTGGCAACGGCAGAAAGGAAGCCTTCCACGTGGATCC
CTATTTCGAAATTTTGGTTGATGAACTAATGGTACTTTCAGATTGTCAAA
CTTTCCACCCGGGATATATGGAAGCACCCGTGAGAATCAAAGTACGCCTC
CTGCAATACGTTTTGGATTTCCCTGCAATCTCTAAAGTACTTCAGCAACC
AGGTTTGTCTAATTTTAGATTAGGGGTGATCATCATGGATGTTTTAGATT
TTTGGAAATTACTATTCCAGGGTTTCGAAATTTTTTGATAGTTTGAAATG
AGTTAGACAGGGTTTTGCAATTTAAGTTTTTTTCTTTTAATGTTTGGAAT
GTCTTCAATTTAAAGGCGTTTTTTTACTTATTTGTTATTTTAATGTTTGG
AATGTCTTCGATTTAAAGGCGTTTTTTTTACTTCTTTGTTTTTTTAATGT
TTAGAATGTCTTCGATTTAAAGGCGTTTTTTTTTACTTCTTTGTTTTTTT
TTAATGTTTGGAATGTCTTCAATTTAAAGGCGTTTTTTTTATTTCTTTGA
TGAAGAATTCCCCGAGCTTGGCAATTTACTTTCCNGGCGTTTTTTTAATT
CTTTGATGAAGAATTCCCCGAGCTTGGCAATTTACTTTCTTTATTTAATT
AGAATTTACAACAATTTACATTTTAGCCGCTGGTGGACTCAAGGCCTGTC
CTTGGTGCAAATTAGAAGGTTGTTACTGTCATGCTCTGAATAAAACCGTA
TATATCAACATTCGAAGGTAATACATACTGGGACTCATCCTGTTGTTCAA
ATTCAACTTAAATTCTAAGTTGAATTTTTATCTTGTTTTTTATATACATT
TTGGTATTAGAGCCGTTTTTAAAAAAGTCTTCAGAATAAAGAAAGTGCGA
TACCTCACCCTCTTAGATTTTGCTGAAATTTGGACGTTTAAATACACTAA
AATGTCAACATATTTCAACCATAATTGTATACACAAAAAAATGATGTCAG
GTTTAGACTGGTTCAGAAGTGAGAAACTAATTTTGGTATTATAGGAACCT
AGACCCAACACACTGTCTTCGCAAGAGCAAGTCGTTTTCAAAAGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023509XLOC_023509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039060-exon-sc0002002-1575043694:29402..31953TCONS_00039060-exon-sc0002002-1575043694:29402..31953Clytia hemisphaericaexon
TCONS_00039060-exon-sc0002002-1575043694:28837..28927TCONS_00039060-exon-sc0002002-1575043694:28837..28927Clytia hemisphaericaexon
TCONS_00039060-exon-sc0002002-1575043694:28505..28551TCONS_00039060-exon-sc0002002-1575043694:28505..28551Clytia hemisphaericaexon
TCONS_00039060-exon-sc0002002-1510915933:29402..31953TCONS_00039060-exon-sc0002002-1510915933:29402..31953Clytia hemisphaericaexon
TCONS_00039060-exon-sc0002002-1510915933:28837..28927TCONS_00039060-exon-sc0002002-1510915933:28837..28927Clytia hemisphaericaexon
TCONS_00039060-exon-sc0002002-1510915933:28505..28551TCONS_00039060-exon-sc0002002-1510915933:28505..28551Clytia hemisphaericaexon
TCONS_00039060-exon-sc0002002-1491911889:29402..31953TCONS_00039060-exon-sc0002002-1491911889:29402..31953Clytia hemisphaericaexon
TCONS_00039060-exon-sc0002002-1491911889:28837..28927TCONS_00039060-exon-sc0002002-1491911889:28837..28927Clytia hemisphaericaexon
TCONS_00039060-exon-sc0002002-1491911889:28505..28551TCONS_00039060-exon-sc0002002-1491911889:28505..28551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002002supercontigsc0002002:28505..31953 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0142998	2.22202e-05	0	0	0	0	0.088079	0.0308294	0.0251492	0.108483	0.0705789	0.0904917	0.0441214	0	0.0685123	0.107743	0.0212532	0.050305	0.292774	0.0844042	0.244417	0.0870991	0	0	0	0.0459461	0.120568	0.272802	0	0.0914955
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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