TCONS_00039058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039058
Unique NameTCONS_00039058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039058 ID=TCONS_00039058|Name=TCONS_00039058|organism=Clytia hemisphaerica|type=transcript|length=703bp
NTGAATTGTATATACGTTCTGTAGCTGCATTATTCCAACCTTACTTAGAG
CCTAGCTCAAATCCCATTGAGATGCAATTCAGTATAAGTAAGGGTATTAC
AGTCCTTCGAATATGGAAAAAGATTCTACAAGTGAAGGGCAAAAGGGTGC
ACGCAGTGCGCTCTGCTGCAATTGATCCAAGTAAACGGGGGATGTTTCTG
ACTTATGGTTGTAATCAAACCGCAGAAATTCTTTTTGCTGCAGCAACATA
CTACATGCTTACTATGTTTGCTCATTTCAAGGACCTAGGTCCATCAGTTT
TGTCTCCATTCAAATCTGGCACAAAAACAACTGAACGCCTGATTAGTGAT
ATTCAGGGTAAAACCAATGCACTTCAATCCTTGGATGCCCTGCCTGTGTT
ATCAGATCTTGTTGATAAGCTTTCAAAAGTACAAAGCAATCATATTACTG
AAGATAGGTTAAAGGCTGCGGGAgcttcaaaacaaaatacaactAATCGT
AGGAGACTCCaagaaaaattgtcaaaagttGTCTTGGGGTCTTACAAATA
TCCTGCCACGTTTGACGAATTTCGAGATTCCTTAATCTCAGCGCACAAAG
AGGGCGAAAAAGCAGGGATTGAAATGTACAGGCAATTGTGTTCAAAAGGA
ATTGCCTTTCTAGAATCAAATGAAAAGTATAAAAAGTTCTCTTTCCTTTA
TTG
Run BLAST on NCBI

protein sequence of TCONS_00039058-protein

>TCONS_00039058-protein ID=TCONS_00039058-protein|Name=TCONS_00039058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
ELYIRSVAALFQPYLEPSSNPIEMQFSISKGITVLRIWKKILQVKGKRVH
AVRSAAIDPSKRGMFLTYGCNQTAEILFAAATYYMLTMFAHFKDLGPSVL
SPFKSGTKTTERLISDIQGKTNALQSLDALPVLSDLVDKLSKVQSNHITE
DRLKAAGASKQNTTNRRRLQEKLSKVVLGSYKYPATFDEFRDSLISAHKE
GEKAGIEMYRQLCSKGIAFLESNEKYKKFSFLY
Run BLAST on NCBI

transcript from alignment at sc0002001:37434..38136

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039058 ID=TCONS_00039058|Name=TCONS_00039058|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0002001:37434..38136 (Clytia hemisphaerica)
CAATAAAGGAAAGAGAACTTTTTATACTTTTCATTTGATTCTAGAAAGGC
AATTCCTTTTGAACACAATTGCCTGTACATTTCAATCCCTGCTTTTTCGC
CCTCTTTGTGCGCTGAGATTAAGGAATCTCGAAATTCGTCAAACGTGGCA
GGATATTTGTAAGACCCCAAGACaacttttgacaatttttcttGGAGTCT
CCTACGATTagttgtattttgttttgaagcTCCCGCAGCCTTTAACCTAT
CTTCAGTAATATGATTGCTTTGTACTTTTGAAAGCTTATCAACAAGATCT
GATAACACAGGCAGGGCATCCAAGGATTGAAGTGCATTGGTTTTACCCTG
AATATCACTAATCAGGCGTTCAGTTGTTTTTGTGCCAGATTTGAATGGAG
ACAAAACTGATGGACCTAGGTCCTTGAAATGAGCAAACATAGTAAGCATG
TAGTATGTTGCTGCAGCAAAAAGAATTTCTGCGGTTTGATTACAACCATA
AGTCAGAAACATCCCCCGTTTACTTGGATCAATTGCAGCAGAGCGCACTG
CGTGCACCCTTTTGCCCTTCACTTGTAGAATCTTTTTCCATATTCGAAGG
ACTGTAATACCCTTACTTATACTGAATTGCATCTCAATGGGATTTGAGCT
AGGCTCTAAGTAAGGTTGGAATAATGCAGCTACAGAACGTATATACAATT
CAN

Coding sequence (CDS) from alignment at sc0002001:37434..38136

>TCONS_00039058 ID=TCONS_00039058|Name=TCONS_00039058|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0002001:37434..38136 (Clytia hemisphaerica)
ATAAAGGAAAGAGAACTTTTTATACTTTTCATTTGATTCTAGAAAGGCAA
TTCCTTTTGAACACAATTGCCTGTACATTTCAATCCCTGCTTTTTCGCCC
TCTTTGTGCGCTGAGATTAAGGAATCTCGAAATTCGTCAAACGTGGCAGG
ATATTTGTAAGACCCCAAGACaacttttgacaatttttcttGGAGTCTCC
TACGATTagttgtattttgttttgaagcTCCCGCAGCCTTTAACCTATCT
TCAGTAATATGATTGCTTTGTACTTTTGAAAGCTTATCAACAAGATCTGA
TAACACAGGCAGGGCATCCAAGGATTGAAGTGCATTGGTTTTACCCTGAA
TATCACTAATCAGGCGTTCAGTTGTTTTTGTGCCAGATTTGAATGGAGAC
AAAACTGATGGACCTAGGTCCTTGAAATGAGCAAACATAGTAAGCATGTA
GTATGTTGCTGCAGCAAAAAGAATTTCTGCGGTTTGATTACAACCATAAG
TCAGAAACATCCCCCGTTTACTTGGATCAATTGCAGCAGAGCGCACTGCG
TGCACCCTTTTGCCCTTCACTTGTAGAATCTTTTTCCATATTCGAAGGAC
TGTAATACCCTTACTTATACTGAATTGCATCTCAATGGGATTTGAGCTAG
GCTCTAAGTAAGGTTGGAATAATGCAGCTACAGAACGTATATACAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023507XLOC_023507Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039058-proteinTCONS_00039058-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039058-exon-sc0002001-1491911889:37434..38136TCONS_00039058-exon-sc0002001-1491911889:37434..38136Clytia hemisphaericaexon
TCONS_00039058-exon-sc0002001-1510915933:37434..38136TCONS_00039058-exon-sc0002001-1510915933:37434..38136Clytia hemisphaericaexon
TCONS_00039058-exon-sc0002001-1575043694:37434..38136TCONS_00039058-exon-sc0002001-1575043694:37434..38136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002001supercontigsc0002001:37434..38136 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.430904	0.140066	0.243946	0	0.871647	0.153064	0.36933	0.691524	0.363114	0.374813	0.291042	0.430469	0.620925	0.248014	0.611703	0.306344	0.862608	0.331554	0	0.639103	0.416622	1.01607	0.0823443	0.52404	0.462642	0.756978	0	0.210192	0	0.0812135
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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