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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039057 ID=TCONS_00039057|Name=TCONS_00039057|organism=Clytia hemisphaerica|type=transcript|length=1071bp
ATATCTGTCTGACAAAACAActgaaaaggaaaagaaaatatcagaaTTCT
TTGTTGCCCAAAAAGACGAGAATGGTTCTGTACTCCTCGACACTCTAGAA
GAGGAGCAGGCAAACGATACTGGAAAACTCCAGGCTCTGAATATTCTAGT
ACCAGTAAGCAGCCCGATTCTGCCAAGTGGCACTTAACGCGAAAGCAGGG
aggtaaaatagaaaaaattcatttaagAGCTGCTCTGAAGATTCTAACAC
CTCGTGAGCATGTGTCACGTGATCGATCTCGTCGTCATATTGCTAGCAAT
TTTCTTCCGGGCAGAGGTACTATCGATAAAACACACAATATTATAGCCTT
TCGTTTTGTGCTTGCTAATTTGGCAGATGAAATAGTTGTTTGCAAAGTAG
CATCCATCACTCGAAATGGATCTTCCATTCCTAGTGCTTCCAGTGAAGAT
GAATCTGTTCGATGCAGACTTATTCCTTTAAAGGAAACAGGAATGGGCAc
ttttatctttgtttttccTGAATCTCTTACAAtgacaaaagaattaaaag
catCTCGCATCCTTGAAGAGATTGCTATGAAGCCAGAAGATGATTCTAAA
ACATACTTTACGATTTTGCcccattttaaaaaaaatctgactGATCGTAG
AAATGGcttaaatgatgaaaaaaataaaaaaatcgtcaaaaaagtttcca
aatcaTTGCTTCCTCTAGAATTTCAAGAAGTGGAAAGCATAGTTGAAAGA
AAAGTAGACCTGAAAAGTCATGAATTCTTGTAtgttgtcaaattcaaaaa
ctcTGAAGAAACAGCTTGGTTGAATTATTCATGCTTTGATCGCCCTTTCC
ACTACAGTAGACGAGTTGGACTAACAACCCCTCTATTTGCTGATATTTCT
AAAATGGATAATGAAGTGAAAGAAAATTCTGTATCTAAGTGTTCAACTAA
GAAAAGACAAGCTTCCGTTGTTGCATATCTTGATAGGCCtgaaaaaattc
ctaaaataaaAGATGAAAAGGACAAAACTCCCCagagtgaaaaattgaaa
ataaaaaaacgtaagAGGGCN Run BLAST on NCBI protein sequence of TCONS_00039057-protein >TCONS_00039057-protein ID=TCONS_00039057-protein|Name=TCONS_00039057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MGTFIFVFPESLTMTKELKASRILEEIAMKPEDDSKTYFTILPHFKKNLT
DRRNGLNDEKNKKIVKKVSKSLLPLEFQEVESIVERKVDLKSHEFLYVVK
FKNSEETAWLNYSCFDRPFHYSRRVGLTTPLFADISKMDNEVKENSVSKC
STKKRQASVVAYLDRPEKIPKIKDEKDKTPQSEKLKIKKRKRX Run BLAST on NCBI transcript from alignment at sc0002001:33444..34514 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039057 ID=TCONS_00039057|Name=TCONS_00039057|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0002001:33444..34514 (Clytia hemisphaerica)
NGCCCTcttacgtttttttattttcaatttttcactctGGGGAGTTTTGT
CCTTTTCATCTtttattttaggaattttttcaGGCCTATCAAGATATGCA
ACAACGGAAGCTTGTCTTTTCTTAGTTGAACACTTAGATACAGAATTTTC
TTTCACTTCATTATCCATTTTAGAAATATCAGCAAATAGAGGGGTTGTTA
GTCCAACTCGTCTACTGTAGTGGAAAGGGCGATCAAAGCATGAATAATTC
AACCAAGCTGTTTCTTCAgagtttttgaatttgacaacaTACAAGAATTC
ATGACTTTTCAGGTCTACTTTTCTTTCAACTATGCTTTCCACTTCTTGAA
ATTCTAGAGGAAGCAAtgatttggaaacttttttgacgatttttttattt
ttttcatcatttaagCCATTTCTACGATCagtcagattttttttaaaatg
ggGCAAAATCGTAAAGTATGTTTTAGAATCATCTTCTGGCTTCATAGCAA
TCTCTTCAAGGATGCGAGatgcttttaattcttttgtcaTTGTAAGAGAT
TCAggaaaaacaaagataaaagTGCCCATTCCTGTTTCCTTTAAAGGAAT
AAGTCTGCATCGAACAGATTCATCTTCACTGGAAGCACTAGGAATGGAAG
ATCCATTTCGAGTGATGGATGCTACTTTGCAAACAACTATTTCATCTGCC
AAATTAGCAAGCACAAAACGAAAGGCTATAATATTGTGTGTTTTATCGAT
AGTACCTCTGCCCGGAAGAAAATTGCTAGCAATATGACGACGAGATCGAT
CACGTGACACATGCTCACGAGGTGTTAGAATCTTCAGAGCAGCTcttaaa
tgaattttttctattttacctCCCTGCTTTCGCGTTAAGTGCCACTTGGC
AGAATCGGGCTGCTTACTGGTACTAGAATATTCAGAGCCTGGAGTTTTCC
AGTATCGTTTGCCTGCTCCTCTTCTAGAGTGTCGAGGAGTACAGAACCAT
TCTCGTCTTTTTGGGCAACAAAGAAttctgatattttcttttccttttca
gTTGTTTTGTCAGACAGATAT Coding sequence (CDS) from alignment at sc0002001:33444..34514 >TCONS_00039057 ID=TCONS_00039057|Name=TCONS_00039057|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0002001:33444..34514 (Clytia hemisphaerica)
NGCCCTcttacgtttttttattttcaatttttcactctGGGGAGTTTTGT
CCTTTTCATCTtttattttaggaattttttcaGGCCTATCAAGATATGCA
ACAACGGAAGCTTGTCTTTTCTTAGTTGAACACTTAGATACAGAATTTTC
TTTCACTTCATTATCCATTTTAGAAATATCAGCAAATAGAGGGGTTGTTA
GTCCAACTCGTCTACTGTAGTGGAAAGGGCGATCAAAGCATGAATAATTC
AACCAAGCTGTTTCTTCAgagtttttgaatttgacaacaTACAAGAATTC
ATGACTTTTCAGGTCTACTTTTCTTTCAACTATGCTTTCCACTTCTTGAA
ATTCTAGAGGAAGCAAtgatttggaaacttttttgacgatttttttattt
ttttcatcatttaagCCATTTCTACGATCagtcagattttttttaaaatg
ggGCAAAATCGTAAAGTATGTTTTAGAATCATCTTCTGGCTTCATAGCAA
TCTCTTCAAGGATGCGAGatgcttttaattcttttgtcaTTGTAAGAGAT
TCAggaaaaacaaagataaaagTGCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039057-exon-sc0002001-1491911889:33444..34514 | TCONS_00039057-exon-sc0002001-1491911889:33444..34514 | Clytia hemisphaerica | exon |
| TCONS_00039057-exon-sc0002001-1510915933:33444..34514 | TCONS_00039057-exon-sc0002001-1510915933:33444..34514 | Clytia hemisphaerica | exon |
| TCONS_00039057-exon-sc0002001-1575043694:33444..34514 | TCONS_00039057-exon-sc0002001-1575043694:33444..34514 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002001 | supercontig | sc0002001:33444..34514 . |
Blast
The following BLAST results are available for this feature:
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