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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039055 ID=TCONS_00039055|Name=TCONS_00039055|organism=Clytia hemisphaerica|type=transcript|length=1885bp
taaaaatattgataatatTAATGTCAATGACGAAATGTTTGAATGTCACA
ACTGTAAAAGATCGTTAAGCTCTTGATTGCTGTTTCAAGAAGAACCAAAA
GAAATTTGTCTAAAAGTTTTGTTTAGTTTGTTAATAAGGGTCTTGAAGGG
TTTGGACCTACTTTGAGTGTgttaaactttgttttttgtCAGATCTACAA
AATACCTAAGCCTTGAGCCTTGTTTAAAGAGTCTGTCTTATCCCTTTAAA
GTGAAGTTGGTTTATTCCTCATTTTTTAAACCGTGTTAAGCATTTTAATC
AGTATTTTCCCTTATCTATTTTTTATCCATTTATgtactttttactttat
tttcaacCAGGTGCTATAAACAGCACtatatttcattttgaaacCAGATT
TAGTAAAAGTAGGAGTTCTATTACCAATTAAAACTTTATACCGAACAGCT
TCTACTTGCAACTTATACTTGTTCAAATTGATGATAAAGCATGTGGGTAC
TAGGTACCTTACAATTGtgaattttccaacccttatagaaagaatttgtt
tttttaatttcacggatggcactattgggaGACAATATTTCACGATATTT
TATACCTTTTACAGCCAAATAATGCATGTTGgctgttgaaatacacatta
atAGCGCTTCTTTTatgccagtaaacatttaaaaagtagtttatttgaca
ttttttatgttttgttttaaagtatTTTGGGGATAAGGCTTTTCCAACTT
AATTCTgcaaaatccgcaaaattttatgCCATTAAAAGTACCCACTTTTG
TATTTTCTGTAGCTGACCGAGCAATGCCAGTTTCTGCATAGATTCCCTCT
GATTTGATTTGTTTAGGGAAtgcaagttttttttcaaatattcgtTGGAT
GACAATTTCGAAAGCTACATCANAAtgcaagtttttttcaaatattcgtT
GGATAACAATTTAGAAAACTACATCGAGCAATTTGCTtttcaatttttac
atttttgaaagaaaatcgtAAATCAGGGAGGCAATCTGGACAAAAATCTT
TCGTCGTTCCCTATACTTAAAATCAAACCACAGGGCATATAATACAATAC
AGTCTAAGAAATATTTATTTCCGCAAAGGTaatgtttatttactttttca
atttcttttcagtataaaataataaaaaaattggcTGAATCATTGATTTA
ATGGAGATAAAAAAACAGCGCACAGACATAAGTAAAACACAAACAATCTT
TTCGCGATAACACTCAAAAAAACACTTAATGAGCACTGTAAAACATAAAG
AGACCTGAAGTATTGACATTGGATTTAATTAGTTTAATtactttaacaat
tttggtCGAATCAGCAAACTATGATAAATTTTAATCAAGTGCACACTAGC
ATGTTGAAAGGTTCTTGAAGGTTCCTCTTTAGCTTTATATATCGGACATT
ATAACAATAAAAGTTGCGCTAGAACTGGTTATATAATCGACACGGTAGAA
CCTGTTTGGAATGCTTGGCATATTTCACGTTTTTGAATTCGTTTGGTGTA
TTCTTTGGTTTGGTTTTGAAGACTAGATGGCTGCGACTGTCAATGGcttg
attttaaaaacatgaaagtATCGCAAGGGTTGCTTCAAAGTTTGTGAATG
AAAATTGTATCGAATTAATGTATGTTTTATGACAGTTTAGTGGAACATTT
ATCTATTGTTACTCCAAAATCTAACAACAtactgaacatatttttgttgc
gttttaacTAAGGCTAGATTAAAAAGTTAAGTTTTTTTGGTGTAATTAAT
TacattgtcttttttttttttctttaattgaCATGTTTAAACTTGATTTA
TTCATTCCAATTTTCTATTAAGGCCtttaaaattg Run BLAST on NCBI transcript from alignment at sc0002001:30623..32507 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039055 ID=TCONS_00039055|Name=TCONS_00039055|organism=Clytia hemisphaerica|type=transcript|length=1885bp|location=Sequence derived from alignment at sc0002001:30623..32507 (Clytia hemisphaerica)
caattttaaaGGCCTTAATAGAAAATTGGAATGAATAAATCAAGTTTAAA
CATGtcaattaaagaaaaaaaaaaaagacaatgtAATTAATTACACCAAA
AAAACTTAACTTTTTAATCTAGCCTTAgttaaaacgcaacaaaaatatgt
tcagtaTGTTGTTAGATTTTGGAGTAACAATAGATAAATGTTCCACTAAA
CTGTCATAAAACATACATTAATTCGATACAATTTTCATTCACAAACTTTG
AAGCAACCCTTGCGATactttcatgtttttaaaatcaagCCATTGACAGT
CGCAGCCATCTAGTCTTCAAAACCAAACCAAAGAATACACCAAACGAATT
CAAAAACGTGAAATATGCCAAGCATTCCAAACAGGTTCTACCGTGTCGAT
TATATAACCAGTTCTAGCGCAACTTTTATTGTTATAATGTCCGATATATA
AAGCTAAAGAGGAACCTTCAAGAACCTTTCAACATGCTAGTGTGCACTTG
ATTAAAATTTATCATAGTTTGCTGATTCGaccaaaattgttaaagtaATT
AAACTAATTAAATCCAATGTCAATACTTCAGGTCTCTTTATGTTTTACAG
TGCTCATTAAGTGTTTTTTTGAGTGTTATCGCGAAAAGATTGTTTGTGTT
TTACTTATGTCTGTGCGCTGTTTTTTTATCTCCATTAAATCAATGATTCA
gccaatttttttattattttatactgaaaagaaattgaaaaagtaaataa
acattACCTTTGCGGAAATAAATATTTCTTAGACTGTATTGTATTATATG
CCCTGTGGTTTGATTTTAAGTATAGGGAACGACGAAAGATTTTTGTCCAG
ATTGCCTCCCTGATTTacgattttctttcaaaaatgtaaaaattgaaaAG
CAAATTGCTCGATGTAGTTTTCTAAATTGTTATCCAacgaatatttgaaa
aaaacttgcaTTNTGATGTAGCTTTCGAAATTGTCATCCAacgaatattt
gaaaaaaaacttgcaTTCCCTAAACAAATCAAATCAGAGGGAATCTATGC
AGAAACTGGCATTGCTCGGTCAGCTACAGAAAATACAAAAGTGGGTACTT
TTAATGGcataaaattttgcggattttgcAGAATTAAGTTGGAAAAGCCT
TATCCCCAAAatactttaaaacaaaacataaaaaatgtcaaataaactac
tttttaaatgtttactggcatAAAAGAAGCGCTattaatgtgtatttcaa
cagcCAACATGCATTATTTGGCTGTAAAAGGTATAAAATATCGTGAAATA
TTGTCtcccaatagtgccatccgtgaaattaaaaaaacaaattctttcta
taagggttggaaaattcaCAATTGTAAGGTACCTAGTACCCACATGCTTT
ATCATCAATTTGAACAAGTATAAGTTGCAAGTAGAAGCTGTTCGGTATAA
AGTTTTAATTGGTAATAGAACTCCTACTTTTACTAAATCTGgtttcaaaa
tgaaatataGTGCTGTTTATAGCACCTGgttgaaaataaagtaaaaagta
cATAAATGGATAAAAAATAGATAAGGGAAAATACTGATTAAAATGCTTAA
CACGGTTTAAAAAATGAGGAATAAACCAACTTCACTTTAAAGGGATAAGA
CAGACTCTTTAAACAAGGCTCAAGGCTTAGGTATTTTGTAGATCTGacaa
aaaacaaagtttaacACACTCAAAGTAGGTCCAAACCCTTCAAGACCCTT
ATTAACAAACTAAACAAAACTTTTAGACAAATTTCTTTTGGTTCTTCTTG
AAACAGCAATCAAGAGCTTAACGATCTTTTACAGTTGTGACATTCAAACA
TTTCGTCATTGACATTAatattatcaatattttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039055-exon-sc0002001-1491911889:30623..32507 | TCONS_00039055-exon-sc0002001-1491911889:30623..32507 | Clytia hemisphaerica | exon |
| TCONS_00039055-exon-sc0002001-1510915933:30623..32507 | TCONS_00039055-exon-sc0002001-1510915933:30623..32507 | Clytia hemisphaerica | exon |
| TCONS_00039055-exon-sc0002001-1575043694:30623..32507 | TCONS_00039055-exon-sc0002001-1575043694:30623..32507 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002001 | supercontig | sc0002001:30623..32507 . |
Blast
The following BLAST results are available for this feature:
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