TCONS_00039054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039054
Unique NameTCONS_00039054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039054 ID=TCONS_00039054|Name=TCONS_00039054|organism=Clytia hemisphaerica|type=transcript|length=1513bp
TTCGCTTTTAACATCCTTATAAGACAAAACTTTACTCAGCATTTGGTTCC
ACAGCAACGGCTTAACTTAATTTAACATAACTTGATACCTGCACTTGAGG
TTGTTGCTCGTGTACTTGAGCTTGATGCTCGTACGCTTGAGCTTTTCGCT
CGTGCACTGCATGATTTATATATGCACTTTGAGCTTGTCGCTCGTGCACT
GCATGACTTTATGATGCATTTTGTTTGAGCTTGTCGCTCGTGCATTGCAT
GACTTATATATGCATTTTGAGCTTGTCGCTCGTGCATTGCATGATTTATA
TATGCATCTTGAGCTTGTCTCTCGTGCATTGCATGATTTATATATGCATT
TTGAGCTTGTCGCTCGTGCGTTGCATGATTTATATATGCACTTTGAGCTT
GTCGTTCGTGCATTGTATGATTTATATATGCACTTTGAGCTTGTCGCTCG
TGCATTGCATGATTTATATATGCACTTTGAGCTTGTCGCTCGTGCATTGC
ATGATTTATATATGCACTTTGAGCTTGTCGCTCGTGCATTGCATGATTTT
ATGATGCATTTTGAGCTTGTCGCTCGTGCATTTTTGGGATTGGCGTCAGT
CTGGTTGTCAAATTGTGTTAAATATTTCGAAACGTAATAAACGTTACTTA
CTATTAATTGTCTAATCTTTAAGCTTTGTGAATGTGCTCCAAAATCACAC
AAAAAGGAGACTTTATGTTTGatcttaaataaataaattttttgtaacGT
GTAATTCGTCAATCGATCGTTTgcttttctcggaaaatttttttaaatat
aaactaCTTTTACGCCTTGATTTTTCACATGTTCTTGCTATACATTTGAA
ATTTAACACAATGCGAAAGGGTGGTTGGGTGGACCAGACTCTCTTTAtgc
ttttataagcataacactaAGCATATTCCAGGCTCGGATatggagaaaat
tgaatataagtTTTCACCAATTTTGTATTGATTTTCGCGAGCCAATTTCT
TTCATAAATAAGGACTTGTTTTCACGAGCAGAGAAAATATTTACGCGAGG
ATAACATTTCGCGAATCGGCCCCTTTTTGAACTAAtctcttttattttct
ttcctaaGGGTTTCGACAAAAGTTATGATTAGtttttcgcgaggattata
tttcgcgaattttgaggAAAACTCTAATCTTCACgcaaattaatccactt
aaggtacaaCCAGAACAGCAAATGGAAGCAAATTTTAAGCAGGGGGGGTC
TGTTCTATGTTTCCAGCACTTTCGCAGCCTCAAGTGTAACGCTGTTGGGT
TCTGTGTGCCTTTTTCCTTCttggtttttttttatttcaggttGTTGTGT
TGGATCGAAAATTCAAGACTTCACATAACCTATTTTAATATTTATCTcct
aataaattaaaaatgtcTGCCGAACTCACCGACCAAGAGACGATCGAGGC
TCAGGAAGCAGAGATTTCAAGCCTAAAGGCTCAATTAGCCAagttgaaag
caaagaaaacaaa
Run BLAST on NCBI

transcript from alignment at sc0002001:28180..30570-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039054 ID=TCONS_00039054|Name=TCONS_00039054|organism=Clytia hemisphaerica|type=transcript|length=2391bp|location=Sequence derived from alignment at sc0002001:28180..30570- (Clytia hemisphaerica)
TTCGCTTTTAACATCCTTATAAGACAAAACTTTACTCAGCATTTGGTTCC
ACAGCAACGGCTTAACTTAATTTAACATAACTTGATACCTGCACTTGAGG
TTGTTGCTCGTGTACTTGAGCTTGATGCTCGTACGCTTGAGCTTTTCGCT
CGTGCACTGCATGATTTATATATGCACTTTGAGCTTGTCGCTCGTGCACT
GCATGACTTTATGATGCATTTTGTTTGAGCTTGTCGCTCGTGCATTGCAT
GACTTATATATGCATTTTGAGCTTGTCGCTCGTGCATTGCATGATTTATA
TATGCATCTTGAGCTTGTCTCTCGTGCATTGCATGATTTATATATGCATT
TTGAGCTTGTCGCTCGTGCGTTGCATGATTTATATATGCACTTTGAGCTT
GTCGTTCGTGCATTGTATGATTTATATATGCACTTTGAGCTTGTCGCTCG
TGCATTGCATGATTTATATATGCACTTTGAGCTTGTCGCTCGTGCATTGC
ATGATTTATATATGCACTTTGAGCTTGTCGCTCGTGCATTGCATGATTTT
ATGATGCATTTTGAGCTTGTCGCTCGTGCATTTTTGGGATTGGCGTCAGT
CTGGTTGTCAAATTGTGTTAAATATTTCGAAACGTAATAAACGTTACTTA
CTATTAATTGTCTAATCTTTAAGCTTTGTGAATGTGCTCCAAAATCACAC
AAAAAGGAGACTTTATGTTTGATCTTAAATAAATAAATTTTTTGTAACGT
GTAATTCGTCAATCGATCGTTTGCTTTTCTCGGAAAATTTTTTTAAATAT
AAACTACTTTTACGCCTTGATTTTTCACATGTTCTTGCTATACATTTGAA
ATTTAACACAATGCGAAAGGGTGGTTGGGTGGACCAGACTCTCTTTATGC
TTTTATAAGCATAACACTAAGCATATTCCAGGCTCGGATATGGAGAAAAT
TGAATATAAGTTTTCACCAATTTTGTATTGATTTTCGCGAGCCAATTTCT
TTCATAAATAAGGACTTGTTTTCACGAGCAGAGAAAATATTTACGCGAGG
ATAACATTTCGCGAATCGGCCCCTTTTTGAACTAATCTCTTTTATTTTCT
TTCCTAAGGGTTTCGACAAAAGTTATGATTAGTTTTTCGCGAGGATTATA
TTTCGCGAATTTTGAGGAAAACTCTAATCTTCACGCAAATTAATCCACTT
AAGGTACAACCAGAACAGCAAATGGAAGCAAATTTTAAGCAGGGGGGGTC
TGTTCTATGTTTCCAGCACTTTCGCAGCCTCAAGTGTAACGCTGTTGGGT
TCTGTGTGCCTTTTTCCTTCTTGGTTTTTTTTTATTTCAGGTTGTTGTGT
TGGATCGAAAATTCAAGACTTCACATAACCTATTTTAATGTAAGGGATGG
TTTGTAATTATTTTGATCGAATTCTTCCTGTTTTGTCTTAAAGTCCGTCC
ATTTTCATTTGGAATACACGTCTTTTTTTTTTAAGAAACTAGTTTTACCA
AGCAGCCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTT
CTTACATGTTTCTAAACTTTTTGACATAATTAGCCTTGATTGGAAGGTTC
TTATAAAAAACCGAATTAAAAAATGTTATTTTCTCATTCTCATACAAAAA
CCCGAGTTACGACGAATGGCGTCATGATTTGAGACTTGTGACCTCACATT
CGTCGTAACTTGTGTTTTTGTAACTCGGGTTCTCCGGGCCTCCCCTTTCC
TGCTGTTCACTTTACAGTTGATGCTCTCTAATTCGACGTTCTACTATTCG
ATACGTTCCCTTTTTCGATAAAATGAAAAGTCACTTTCAAACGACGCTCT
ATTATTCGATAAGCCCCCCCCTATTCGATGAAAATAAATCTCCCTTGAAA
GTCGAATTAGAGAGCGTCAACTGTAGTTTATTTATATATCCAATTGCTAT
AGGGGAAGGAACTTTCGCGAATCAGCTTTTCAGAATTTTTCGCCGAATTA
ACTTTCGTGAGAATTGCAATCATGTTAATATATTTGGCGGATAGATCAAG
GGAAAGTTTGTTGTAAACCACTCAATGTTGAAATTGTTATCTTTCTCGTC
TAGATTTATCTCCTAATAAATTAAAAATGTCTGCCGAACTCACCGACCAA
GAGACGATCGAGGCTCAGGAAGCAGAGATTTCAAGCCTAAAGGCTCAATT
AGCCAGTGAGTATTTTTATTTACGGCTGTGCAAGTCAAAAGAAGATTTTT
GCAAGATTGGCAATCAACTAAATTTTACAATTTCTTCTGCAAGTGAAATC
TTTTTGCAATATTATTTGAAACATTTGCATCTCTACAAAAAGGATAATTT
AATTTATTTTTTTTTTCAGAGTTGAAAGCAAAGAAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023503XLOC_023503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039054-exon-sc0002001-1575043694:29182..30570TCONS_00039054-exon-sc0002001-1575043694:29182..30570Clytia hemisphaericaexon
TCONS_00039054-exon-sc0002001-1575043694:28366..28467TCONS_00039054-exon-sc0002001-1575043694:28366..28467Clytia hemisphaericaexon
TCONS_00039054-exon-sc0002001-1575043694:28180..28201TCONS_00039054-exon-sc0002001-1575043694:28180..28201Clytia hemisphaericaexon
TCONS_00039054-exon-sc0002001-1510915933:29182..30570TCONS_00039054-exon-sc0002001-1510915933:29182..30570Clytia hemisphaericaexon
TCONS_00039054-exon-sc0002001-1510915933:28366..28467TCONS_00039054-exon-sc0002001-1510915933:28366..28467Clytia hemisphaericaexon
TCONS_00039054-exon-sc0002001-1510915933:28180..28201TCONS_00039054-exon-sc0002001-1510915933:28180..28201Clytia hemisphaericaexon
TCONS_00039054-exon-sc0002001-1491911889:29182..30570TCONS_00039054-exon-sc0002001-1491911889:29182..30570Clytia hemisphaericaexon
TCONS_00039054-exon-sc0002001-1491911889:28366..28467TCONS_00039054-exon-sc0002001-1491911889:28366..28467Clytia hemisphaericaexon
TCONS_00039054-exon-sc0002001-1491911889:28180..28201TCONS_00039054-exon-sc0002001-1491911889:28180..28201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002001supercontigsc0002001:28180..30570 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21057	1.47525	0.30488	0.118373	1.21613	0.583481	1.11563	1.15708	1.79114	1.22159	1.85299	1.94738	2.56083	3.06492	1.96889	2.02373	3.62006	2.62714	1.76112	1.57903	4.2373	3.93794	3.62041	3.0698	1.32128	0.535393	1.58721	1.75015	1.66263	1.59912
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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