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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039051 ID=TCONS_00039051|Name=TCONS_00039051|organism=Clytia hemisphaerica|type=transcript|length=1223bp
CACAACaacctgaaataaaaaaaaaccaaGAAGGAAAAAGGCACACAGAA
CCCAACAGCGTTACACTTGAGGCTGCGAAAGTGCTGGAAACATAGAACAG
ACCCCCCCTGCTTAAAATTTGCTTCCATTTGCTGTTCTGGttgtacctta
agtggattaatttgcGTGAAGATTAGAGTTTTcctcaaaattcgcgaaat
ataatcctcgcgaaaaaCTAATCATAACTTTTGTCGAAACCCttaggaaa
gaaaataaaagagaTTAGTTCAAAAAGGGGCCGATTCGCGAAATGTTATC
CTCGCGTAAATATTTTCTCTGCTCGTGAAAACAAGTCCTTATTTATGAAA
GAAATTGGCTCGCGAAAATCAATACAAAATTGGTGAAAacttatattcaa
ttttctccatATCCGAGCCTGGAATATGCTtagtgttatgcttataaaag
caTAAAGAGAGTCTGGTCCACCCAACCACCCTTTCGCATTGTGTTAAATT
TCAAATGTATAGCAAGAACATGTGAAAAATCAAGGCGTAAAAGtagttta
tatttaaaaaaattttccgagaaaagcAAACGATCGATTGACGAATTACA
CgttacaaaaaatttatttatttaagatCAAACATAAAGTCTCCTTTTTG
TGTGATTTTGGAGCACATTCACAAAGCTTAAAGATTAGACAATTAATAGT
AAGTAACGTTTATTACGTTTCGAAATATTTAACACAATTTGACAACCAGA
CTGACGCCAATCCCAAAAATGCACGAGCGACAAGCTCAAAATGCATCATA
AAATCATGCAATGCACGAGCGACAAGCTCAAAGTGCATATATAAATCATG
CAATGCACGAGCGACAAGCTCAAAGTGCATATATAAATCATGCAATGCAC
GAGCGACAAGCTCAAAATGCATATATAAATCATGCAATGCACGAGCGACA
AGCTCAAAATGCATATATAAGTCATGCAATGCACGAGCGACAAGCTCAAA
CAAAATGCATCATAAAGTCATGCAGTGCACGAGCGACAAGCTCAAAGTGC
ATATATAAATCATGCAGTGCACGAGCGAAAAGCTCAAGCGTACGAGCATC
AAGCTCAAGTACACGAGCAACAACCTCAAGTGCAGGTATCAAGTTATGTT
AAATTAAGTTAAGCCGTTGCTGTGGAACCAAATGCTGAGTAAAGTTTTGT
CTTATAAGGATGTTAAAAGCGAA Run BLAST on NCBI protein sequence of TCONS_00039051-protein >TCONS_00039051-protein ID=TCONS_00039051-protein|Name=TCONS_00039051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MHERQAQSAYINHAMHERQAQSAYINHAMHERQAQNAYINHAMHERQAQN
AYISHAMHERQAQTKCIIKSCSARATSSKCIYKSCSARAKSSSVRASSSS
TRATTSSAGIKLC Run BLAST on NCBI transcript from alignment at sc0002001:29222..30570+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039051 ID=TCONS_00039051|Name=TCONS_00039051|organism=Clytia hemisphaerica|type=transcript|length=1349bp|location=Sequence derived from alignment at sc0002001:29222..30570+ (Clytia hemisphaerica)
CACAACaacctgaaataaaaaaaaaccaaGAAGGAAAAAGGCACACAGAA
CCCAACAGCGTTACACTTGAGGCTGCGAAAGTGCTGGAAACATAGAACAG
ACCCCCCCTGCTTAAAATTTGCTTCCATTTGCTGTTCTGGttgtacctta
agtggattaatttgcGTGAAGATTAGAGTTTTcctcaaaattcgcgaaat
ataatcctcgcgaaaaaCTAATCATAACTTTTGTCGAAACCCttaggaaa
gaaaataaaagagaTTAGTTCAAAAAGGGGCCGATTCGCGAAATGTTATC
CTCGCGTAAATATTTTCTCTGCTCGTGAAAACAAGTCCTTATTTATGAAA
GAAATTGGCTCGCGAAAATCAATACAAAATTGGTGAAAacttatattcaa
ttttctccatATCCGAGCCTGGAATATGCTtagtgttatgcttataaaag
caTAAAGAGAGTCTGGTCCACCCAACCACCCTTTCGCATTGTGTTAAATT
TCAAATGTATAGCAAGAACATGTGAAAAATCAAGGCGTAAAAGtagttta
tatttaaaaaaattttccgagaaaagcAAACGATCGATTGACGAATTACA
CgttacaaaaaatttatttatttaagatCAAACATAAAGTCTCCTTTTTG
TGTGATTTTGGAGCACATTCACAAAGCTTAAAGATTAGACAATTAATAGT
AAGTAACGTTTATTACGTTTCGAAATATTTAACACAATTTGACAACCAGA
CTGACGCCAATCCCAAAAATGCACGAGCGACAAGCTCAAAATGCATCATA
AAATCATGCAATGCACGAGCGACAAGCTCAAAGTGCATATATAAATCATG
CAATGCACGAGCGACAAGCTCAAAGTGCATATATAAATCATGCAATGCAC
GAGCGACAAGCTCAAAGTGCATATATAAATCATACAATGCACGAACGACA
AGCTCAAAGTGCATATATAAATCATGCAACGCACGAGCGACAAGCTCAAA
ATGCATATATAAATCATGCAATGCACGAGAGACAAGCTCAAGATGCATAT
ATAAATCATGCAATGCACGAGCGACAAGCTCAAAATGCATATATAAGTCA
TGCAATGCACGAGCGACAAGCTCAAACAAAATGCATCATAAAGTCATGCA
GTGCACGAGCGACAAGCTCAAAGTGCATATATAAATCATGCAGTGCACGA
GCGAAAAGCTCAAGCGTACGAGCATCAAGCTCAAGTACACGAGCAACAAC
CTCAAGTGCAGGTATCAAGTTATGTTAAATTAAGTTAAGCCGTTGCTGTG
GAACCAAATGCTGAGTAAAGTTTTGTCTTATAAGGATGTTAAAAGCGAA Coding sequence (CDS) from alignment at sc0002001:29222..30570+ >TCONS_00039051 ID=TCONS_00039051|Name=TCONS_00039051|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0002001:29222..30570+ (Clytia hemisphaerica)
ATGCACGAGCGACAAGCTCAAAGTGCATATATAAATCATGCAATGCACGA
GCGACAAGCTCAAAGTGCATATATAAATCATGCAATGCACGAGCGACAAG
CTCAAAATGCATATATAAATCATGCAATGCACGAGCGACAAGCTCAAAAT
GCATATATAAGTCATGCAATGCACGAGCGACAAGCTCAAACAAAATGCAT
CATAAAGTCATGCAGTGCACGAGCGACAAGCTCAAAGTGCATATATAAAT
CATGCAGTGCACGAGCGAAAAGCTCAAGCGTACGAGCATCAAGCTCAAGT
ACACGAGCAACAACCTCAAGTGCAGGTATCAAGTTATGTTAAATGCACGA
GCGACAAGCTCAAAGTGCATATATAAATCATGCAATGCACGAGCGACAAG
CTCAAAGTGCATATATAAATCATGCAATGCACGAGCGACAAGCTCAAAAT
GCATATATAAATCATGCAATGCACGAGCGACAAGCTCAAAATGCATATAT
AAGTCATGCAATGCACGAGCGACAAGCTCAAACAAAATGCATCATAAAGT
CATGCAGTGCACGAGCGACAAGCTCAAAGTGCATATATAAATCATGCAGT
GCACGAGCGAAAAGCTCAAGCGTACGAGCATCAAGCTCAAGTACACGAGC
AACAACCTCAAGTGCAGGTATCAAGTTATGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039051-exon-sc0002001-1491911889:29222..30137 | TCONS_00039051-exon-sc0002001-1491911889:29222..30137 | Clytia hemisphaerica | exon |
| TCONS_00039051-exon-sc0002001-1510915933:29222..30137 | TCONS_00039051-exon-sc0002001-1510915933:29222..30137 | Clytia hemisphaerica | exon |
| TCONS_00039051-exon-sc0002001-1575043694:29222..30137 | TCONS_00039051-exon-sc0002001-1575043694:29222..30137 | Clytia hemisphaerica | exon |
| TCONS_00039051-exon-sc0002001-1491911889:30264..30570 | TCONS_00039051-exon-sc0002001-1491911889:30264..30570 | Clytia hemisphaerica | exon |
| TCONS_00039051-exon-sc0002001-1510915933:30264..30570 | TCONS_00039051-exon-sc0002001-1510915933:30264..30570 | Clytia hemisphaerica | exon |
| TCONS_00039051-exon-sc0002001-1575043694:30264..30570 | TCONS_00039051-exon-sc0002001-1575043694:30264..30570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002001 | supercontig | sc0002001:29222..30570 + |
Blast
The following BLAST results are available for this feature:
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