TCONS_00039050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039050
Unique NameTCONS_00039050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039050 ID=TCONS_00039050|Name=TCONS_00039050|organism=Clytia hemisphaerica|type=transcript|length=557bp
GGAAACAAGAAGAGAAGTCCACccaaaattatccaaaaactgcagGCAAA
AACTGATCTGGAGATGCTGCAATCGCATAACGTAACCAAGATCCTATTAT
GCCAAGACGAAATAGTCATATTATCATGTGGCAAAATCCTAACACGGTTA
GGAGTTGATGATATTGGTTTGGCCATAATAACCATGTTTAGTCATTTTTA
CCTTTTGGATTTGAATTACCCGGCCTGTTGGTGGGCTGTTTTCACATTTA
TACAATTTGCCATCTTCGGCGAAAAAGAGGAAGAGAGTGTGCAAGAACAA
TTTCGGGATCAGTGGAAGAAAGAATGGAAAGAGTTTACCTCGTATCTCTC
TTCCAGGGAGGAAGAGGAGGTGCTCGATGATTGATGACATTTGGCATTGT
TtcgttttttcattcttttcgcTTAATTAGGCTGgccttaaaaaattgtt
ggtttgatGTCATCCGACCCTAGGTTTTGTaggagggtcggtcggtcgga
aataatttttattttgttgatttatGAAGAGTTTGAGCTTCTgtttgagt
ttttttg
Run BLAST on NCBI

protein sequence of TCONS_00039050-protein

>TCONS_00039050-protein ID=TCONS_00039050-protein|Name=TCONS_00039050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
GNKKRSPPKIIQKLQAKTDLEMLQSHNVTKILLCQDEIVILSCGKILTRL
GVDDIGLAIITMFSHFYLLDLNYPACWWAVFTFIQFAIFGEKEEESVQEQ
FRDQWKKEWKEFTSYLSSREEEEVLDD
Run BLAST on NCBI

transcript from alignment at sc0002001:6887..7818+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039050 ID=TCONS_00039050|Name=TCONS_00039050|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at sc0002001:6887..7818+ (Clytia hemisphaerica)
GGAAACAAGAAGAGAAGTCCACccaaaattatccaaaaactgcaggtaaa
atatttcttgttttataaaataactgaTTGACTGGCCTTCGTTTAcctaa
attattttaaattataCCTTTTGTAAACGCACTTCATTTTTACAACAACC
GTTTATGATTTGAAAGGGTTGTATTTtgatgggataaatttttgcagGGA
TTAATGTTTGTGGATgagcctatccgcgaaattttagGATTTAGAGGATG
TCGTCTTTTCAAATATCGCGGGGATTTTTTTCGCAGATGAACCCTTTTTA
AATTTCCCTCTGGACTTATTTTCgcagatgacacccaaatccgcgaattC
TGTGAAATTTATCCCTTCAAAAAGTATATTATTTGAATAATTTGTTATGG
TTCCTATCTTTTTTTCTCAGGCAAAAACTGATCTGGAGATGCTGCAATCG
CATAACGTAACCAAGATCCTATTATGCCAAGACGAAATAGTCATATTATC
ATGTGGCAAAATCCTAACACGGTTAGGAGTTGATGATATTGGTTTGGCCA
TAATAACCATGTTTAGTCATTTTTACCTTTTGGATTTGAATTACCCGGCC
TGTTGGTGGGCTGTTTTCACATTTATACAATTTGCCATCTTCGGCGAAAA
AGAGGAAGAGAGTGTGCAAGAACAATTTCGGGATCAGTGGAAGAAAGAAT
GGAAAGAGTTTACCTCGTATCTCTCTTCCAGGGAGGAAGAGGAGGTGCTC
GATGATTGATGACATTTGGCATTGTTtcgttttttcattcttttcgcTTA
ATTAGGCTGgccttaaaaaattgttggtttgatGTCATCCGACCCTAGGT
TTTGTaggagggtcggtcggtcggaaataatttttattttgttgatttat
GAAGAGTTTGAGCTTCTgtttgagtttttttg

Coding sequence (CDS) from alignment at sc0002001:6887..7818+

>TCONS_00039050 ID=TCONS_00039050|Name=TCONS_00039050|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0002001:6887..7818+ (Clytia hemisphaerica)
GGAAACAAGAAGAGAAGTCCACccaaaattatccaaaaactgcagGCAAA
AACTGATCTGGAGATGCTGCAATCGCATAACGTAACCAAGATCCTATTAT
GCCAAGACGAAATAGTCATATTATCATGTGGCAAAATCCTAACACGGTTA
GGAGTTGATGATATTGGTTTGGCCATAATAACCATGTTTAGTCATTTTTA
CCTTTTGGATTTGAATTACCCGGCCTGTTGGTGGGCTGTTTTCACATTTA
TACAATTTGCCATCTTCGGCGAAAAAGAGGAAGAGAGTGTGCAAGAACAA
TTTCGGGATCAGTGGAAGAAAGAATGGAAAGAGTTTACCTCGTATCTCTC
TTCCAGGGAGGAAGAGGAGGTGCTCGATGATTGAGGAAACAAGAAGAGAA
GTCCACccaaaattatccaaaaactgcagGCAAAAACTGATCTGGAGATG
CTGCAATCGCATAACGTAACCAAGATCCTATTATGCCAAGACGAAATAGT
CATATTATCATGTGGCAAAATCCTAACACGGTTAGGAGTTGATGATATTG
GTTTGGCCATAATAACCATGTTTAGTCATTTTTACCTTTTGGATTTGAAT
TACCCGGCCTGTTGGTGGGCTGTTTTCACATTTATACAATTTGCCATCTT
CGGCGAAAAAGAGGAAGAGAGTGTGCAAGAACAATTTCGGGATCAGTGGA
AGAAAGAATGGAAAGAGTTTACCTCGTATCTCTCTTCCAGGGAGGAAGAG
GAGGTGCTCGATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023501XLOC_023501Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039050-proteinTCONS_00039050-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039050-exon-sc0002001-1491911889:6887..6931TCONS_00039050-exon-sc0002001-1491911889:6887..6931Clytia hemisphaericaexon
TCONS_00039050-exon-sc0002001-1510915933:6887..6931TCONS_00039050-exon-sc0002001-1510915933:6887..6931Clytia hemisphaericaexon
TCONS_00039050-exon-sc0002001-1575043694:6887..6931TCONS_00039050-exon-sc0002001-1575043694:6887..6931Clytia hemisphaericaexon
TCONS_00039050-exon-sc0002001-1491911889:7307..7818TCONS_00039050-exon-sc0002001-1491911889:7307..7818Clytia hemisphaericaexon
TCONS_00039050-exon-sc0002001-1510915933:7307..7818TCONS_00039050-exon-sc0002001-1510915933:7307..7818Clytia hemisphaericaexon
TCONS_00039050-exon-sc0002001-1575043694:7307..7818TCONS_00039050-exon-sc0002001-1575043694:7307..7818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002001supercontigsc0002001:6887..7818 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0994149	0	0.11293	0.137482	0.32592	0.262139	0.490823	0.859092	0.42565	0.826292	0.543172	0.203406	0.211239	0.0578892	0	0.0765316	0.0784425	0	0	0.295706	0	0.116891	0	0.547283	0.195375	0	0	0.113154	0.115286
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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