TCONS_00039049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039049
Unique NameTCONS_00039049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039049 ID=TCONS_00039049|Name=TCONS_00039049|organism=Clytia hemisphaerica|type=transcript|length=500bp
CTAAAGTGGTCAACAACAAGAATTTTGCATCAAATCACTAGGCAGGTTTT
TATGCAAGAAATGTAGTGATCCAGAAATTAAAAAAGAGAAGCAAAAATCA
TGGGTCCGTTCAAACCCGTTAGGGTAAAAGACCAAAAATGTTTGGTGGTG
ATGCCATCTGGTGATGACATTGAGATTGGTGTCACTAATGTTATGAAAGG
CAGTGGTCTTTTAGATCTTGTCTgcaaaaaagttggtatcattGAAAAAG
AGTATTTTGGCTTCAAGTATGTAcatcacaaagataaaaaggtAAATTAG
AAAATACTTTTCTCCATTTACTTTTATCATATATATCATGATACCTCATT
TGTTGTGTACTTTTAATACACAGAGGGAGGGTTTATTTGAAGCTGGTGAC
CAAAATTTCTCTCTAAAGCCTCAAAGCGTAattattaagcagatattcga
ctTTTTCACGTTGAATATAATGGTTTATCGTTCACCAATTAGCAGGAAAG
Run BLAST on NCBI

transcript from alignment at sc0002000:13846..19595-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039049 ID=TCONS_00039049|Name=TCONS_00039049|organism=Clytia hemisphaerica|type=transcript|length=5750bp|location=Sequence derived from alignment at sc0002000:13846..19595- (Clytia hemisphaerica)
CTAAAGTGGTCAACAACAAGAATTTTGCATCAAATCACTAGGCAGGTACA
TATTTAATCTGATTGTTGTCAAGTAATCTTTAATTCGAGTATTTAATCAA
GGTTTTGAATTACATATGCTTTTAGATTCACTTTAAAAGCAACAAGAGGG
CCCCATTAGCCTACCAGTCCTTTTTTTATAAAGTTATAAAAACATGTAAA
AATATATGTGATGTGTTGTTGATGTGATGTGACGTTGGTAAAAGTAGATC
AGTTTGACATTAGTTAAACTAAACCTAGCTTTGAGTGTTTTTATACTATA
TTATCATTGATCAATAAAGTAAACTTAAGAGTTGTTTGAATGAAATGATC
TTACAATTATACCTACTCTCTTATTATAATAGAAGAAGTGGGCGGCGACG
ACCTGGCAGGGAGGTGCAAGTGTGCACTGATCTGCTGATATTGCTGCGAA
TCTTCCCTCGCGGCATCCTATAAAGTATTAACTTGAGTATTAGGGTTTTA
TCTTCGTAATACGGAGCAAATAATTTCTGGTCCAAAGTGGGGGAGTAATT
TTAATACACCTTTCATTCCCGTAATTCAAATTTCTCAGAAATGGCCCGGG
AAAATGTGCGCTCCACCGTTGTGTGTAAAATTGTTTGGGAGGTAAACGAA
CGCGTTTTTGCCTGCGAGGGGTTAGGGAAAGTGGGTTTTCAGCTTCTAAC
TTTTGATAGCGATCTTCTTTTGGCAAAAGATTTTCAGGGTGGTATAATAT
CATGAATAGCAGTATAGACCTAACTCTTCATACAAAAATTACAAGAAACA
CATATTTGGACTTTGTACCCTATGCTGCACACCAGCACTTAAGCTGAAGT
CCCGCAAAGGCGGGACAAAATTTAGTTTTTTGCAGTTTGCAAAAAAACGC
CACATAGAAGATCTTTCAAATTCAGTATGTGAATAGAGCAGTAAAAAATA
CAACTTTTCTATTTTTCCTTTTTTTTGCAAAAGTTCTAGGAATGAAAATA
AAAGGATAATGATAATTGAATCTATCTATCTATCTATCTATCTATATATT
TAAGTAGTAACAAAACATACATGTTCGTTCTCCCTACATATAAAAACATT
TAACAAAAAAAAATATAAATGAAAATGAGTTAAAATAAAATGTTTGGTTC
TTTATTCAAAAATAATTTATAATATACTAGGTCACAGTGTGGATGTAAAC
CACACTGAAACGACCGCCTTCCATCACGCACGCTCAATCCTCAGACGGTG
TTAAAAATGGTAGACTCAGCTGTGCCAGATCATTTCGATGGAAGTTGTTG
GAATGTTTACAAGACTCTTGACAGAAAATCTTTTGTTTTATTGTCAATGA
TGACAGTGCTGTTATTAATTTTTTTAGATCTGATATATTGATGTTTGTAA
GTGCACTTATAGTTTTGATTCCCATTGAAGAATCATATTCTGGTTTTCAT
GTTATTAGATGCTGTTTTAGAGCTTTAGGGCAGCTAGCCTGGATAGAGTG
AATATACTAAAATTTGAGGGGATTATGTTCGACAGAACTTAAGAAAAGCT
CAAAAAACCAACTTTCCCTAAGGAAACACAGGCAAAAACGGGTTTGTTTA
CCTCCAGAGCCCAAACAGTGGAGAGCATCACAATAATGCGCGCACATTGG
TTTTACCAATTACGGGAAAGGTGTATTAGTGGAATTGAGTTAATACCTAC
CATGCGAGATCGGGTAATTTGCATCAGTGGAGGCTAACATGCATAGCCCT
CAAATGAATGACCTGGCTGGTCCTTAAAATACTAAGTTAAATCTAAACAA
AAATGGTAGAGTAGAGCTGCGAGCGGAGCTGCGTAGTTCATTTGTTTTGA
AATTTTGCTGCTTTGATTGGTCAGTCATTTGAGGCCTATGCATGTTAGCC
TCCACTGATGCAAGTTACCCGACTTTGCGGTAGGTTTTCACTTTCTCCAA
GACTATTTTTAAGATAAAAACAGCAATTTAGATTGCTCTTTTTGGCAATT
ATTGTCGATTACAGCAATTTTCTCAATGATGAACTGCCAAAACAGCTAAA
ATGTGTATTCCTTATAAGGGCAAAGATGTCAGAGGTGTTTGAAAATTGTA
AAATTGCAATGTGGAAAAGGTTTTTCTGATTTTTAACCCTTTCAGTCCCA
TAGTTTTCACAGCTACTTTCCCAGAGCCGTAAAATGAGTTTTTTAATGCA
TTTACTCATGCTTCAATATCTTTGGAATCACTAAACCTAGGCCTCTCAAG
TTTTCACCATTTTCACTTATAGTATGAGGATCATTTTGATAGAAAAAAAT
TTGCAAAATGACGTCATCAGCGTGTCACGTGATCAGAGACTGGCAAAAAG
AGAAGGGCATTCATTCTTCTGATAAATGTTTAGCACAACAGTATCTACTA
ACTGAAAAAAGAATTATTTGATTAGCCCTCATAGAAAAATCATAATGATT
GATAGAAGTTGTAAAAAATCCCTTTTTCGGCCTTACAGATTTTGCTTGCA
AAAATTTTTGTAAATACTTTTGTAAACAAAACTTTTTACTCAAAAAAGCT
TTTTTTACGCCGTCTTTTCCACACAACGCGCTATCTTATCTTCCTTGAAA
GCTATTTAAAAACATCTCTTTATTTCCCGCCAAAACATCACAATTTGAAA
AAGAAATCAGGGACCGCTATGCAGTCCTCTGGGAAAAAAACAACGAGTCC
ATAAAGGGACTGCATTGCGGTCCCCTGGGACTGAAAGGGTGAATAGTGAT
TTTTACAATTTTCATTGCTCATTAACATGAAAAGCTATTAAATCCTTACA
GTTTACCCTAAGTTTTGCAATCAATTCAATAGCAGCCAGATTCAGAGATT
CACTTTAGGGCTCTACTAAAGTACCTCTATCTATACCTTGAAGTTTATGA
ATCAGGTTGTAACCTAATTAAAATATCACCAAAAATCAAGAGTAAAAGAC
ATTGTTATCATGACGCCATAATTTGATTAAATTTGATGACGTCAAGTTTG
CAGGTGTGTTAAAGCAGACACTTAAAATCTGAGTTTTCCTAATTTATATG
TGCAATAAGGCTTGTTATCCACTACAAATTTATGGTATGTGGTCCATTGC
AATCAGGGGGGGGTCAACATCCAGATACCAGACCCATAGCCGGGTGGTGG
TGTCTTTTTTTCCTTTAAAAGTTTGAAAAGTCAAGTTGGTATTGATGGGG
GTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGTGGGTCCCCCTTTTTTTAGAAAAAAAGAGTTATCCTCAGTTGGTATT
GATACCAAAATAGGGGGTGGGTACCCCTTTTTTTAAATAATATGATTCAA
AAAGTTGGTATCCATATCAAAATGACAGCAAAACGTTCCTAAATTCTGCC
CTTATAGCTAGAAAATACCCCGGTGTACATATCAGTCTAAACAGGTTTCA
ATTGGATTTGTTTTAGCTTATGAGTATAATGACTGTAAATGAGTAATAGG
TATAAATGACTTTGAAGTTTGTTTATTTTGGACTTTTTCGATATTTTCAA
GTTTTCTTTTTGATCAAGAGCCTGAAGAAAAAACATTTTTTCTGTGATAG
CATTTGGTAATGAATGAGTGAATCTATTCTGTTCTAAAATTATGTACTAA
TAATAGCTTCTCCTAGTTTTTGCACATCAATTATTATATTCAGATAATAT
TGATTCAGATTGATTTTGCTAGCTTCATTGGGTTTGTTTTTTATTATATT
GTCAGTTTTCAGTCATTTTCTATTTTAGCATATGACATTTTATGTGTTGT
GTTGAAGAAAGAGTATTTCAAAAATGAGTTTTTTTGAAGTTTCTCTTAGT
ACCCTGTTTGTGCGGGAGGGGGTGGGTCCCCTTTAAACAGCTTTAAGCTC
AAATTTGTCAGATTGGTATTGGTACTAAACTGGGGGGTGGGTCCCATGAT
ATTTTGTCAAATTCAAAAAGTCATGTTGGTATCGATACCAAATTAATGGG
GTGGGTCCCCCCTTTTGCTGAAAATTATGATTTTCAAGCTGGTATCGATA
CCAAAATAAGGGGGTGGGTCCCCCCTTTTTCTGAAAATTATGATTTTCAA
GTTGGTATCGCTACCAAAATAAGGGGGTGGGTCCCCCCTTTTTCTGAAAA
TTATGATTTTCAAGTTGGTATCGATACCAATTTTGGGGTGGTGGTGTTAA
CTTAGCTCAAAAGGTCAAAAGTCAGGTTTTTGGGCTATGGGTTGGTATTA
TAAATGTTGATCCCCCCCTGTTGCAATCCTCAGAGAGTTTATGTTTGTTT
TTGGAGGCGTGTGTATGCTATCACACACCTCAGATGATTTACCCTGAATA
CCACATTCTAATACTACTGCATTAAAACTCAATTTTCAGACCAAAACACA
AGTATATAAGGAAAAGTGCCTATAAAATACCTCGTGGGGGAACATGTTTT
GATGCTAAAGCGAGATATGGGGGAGAAGATATTCAAGGACACTATGGTTT
TTTAAAACTTTTATTGTACTTAAAGTTAGAACGGCGATTAACAGTCTTAT
TCCTAAGATTTATTTGGAACAGTGATGTGATAGATTAGATGAGGTCTATT
GTAGTAATTGTGTCATGTGTGTTAAAAAGAATCCTTTGTAATTGATAGAT
TTTATGAACAAATTTGTCAAATTTTTTTGTCATTGTTGTTTTATATTTCT
TATGTGTACTCTAAATTTCGAAGGTCATTGTTAGTCTCATATATCATGAG
TAGATGTGTAAAATAGTATGTTTTAAACGAATTACACATCCAATGATTCT
TTTTACAATACAATACACAGAAATCAAGATAGATCCTCATTAAACATTAC
AAGAAGCTTTAGTTTCATGTTGCAATTTGTCAGTCTTGCTGTGATATCAG
GTGATATATTTGAAATACGAATTGAAATGTCTATGTTAAAAGAAATCTTA
TCTAGAAACAACTATATCTCATTTATGCCTGATTAGGTTATTCTTAGAGC
TACTGCTATTGATGCTAAGTCTCTTTGCTTTTTCATAATTTTGTCTTGAT
TGTACCTTACATTTCTTACCATTAGGTTTTTATGCAAGAAATGTAGTGAT
CCAGAAATTAAAAAAGAGAAGCAAAAATCATGGGTCCGTTCAAACCCGTT
AGGGTAAAAGACCAAAAATGTTTGGTGGTGATGCCATCTGGTGATGACAT
TGAGATTGGTGTCACTGTAAGTTTTCTTTCCGTTTATTTCAATTTTTGAC
GTTTTTGAGCAATCTCAGCAAAAAGCTTTTATTTTCATTTCAGTATAGCT
TTTGTTTTTGTGCACCAATTTGATAAATGAGCCAACAATATTCAAGTTTA
CCTTTTCCCTTTCAATGAAATAATAATGGTTGTTTATTTCTGACACTCCC
CTTAGATTTTCTAAACTCACCTCTCTGTCTGTTTAGAATGTTATGAAAGG
CAGTGGTCTTTTAGATCTTGTCTGCAAAAAAGTTGGTATCATTGAAAAAG
AGTATTTTGGCTTCAAGTATGTACATCACAAAGATAAAAAGGTAAATTAG
AAAATACTTTTCTCCATTTACTTTTATCATATATATCATGATACCTCATT
TGTTGTGTACTTTTAATACACAGAGGGAGGGTTTATTTGAAGCTGGTGAC
CAAAATTTCTCTCTAAAGCCTCAAAGCGTAATTATTAAGCAGATATTCGA
CTTTTTCACGTTGAATATAATGGTTTATCGTTCACCAATTAGCAGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023500XLOC_023500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039049-exon-sc0002000-1575043694:19551..19595TCONS_00039049-exon-sc0002000-1575043694:19551..19595Clytia hemisphaericaexon
TCONS_00039049-exon-sc0002000-1575043694:14380..14520TCONS_00039049-exon-sc0002000-1575043694:14380..14520Clytia hemisphaericaexon
TCONS_00039049-exon-sc0002000-1575043694:13846..14159TCONS_00039049-exon-sc0002000-1575043694:13846..14159Clytia hemisphaericaexon
TCONS_00039049-exon-sc0002000-1510915933:19551..19595TCONS_00039049-exon-sc0002000-1510915933:19551..19595Clytia hemisphaericaexon
TCONS_00039049-exon-sc0002000-1510915933:14380..14520TCONS_00039049-exon-sc0002000-1510915933:14380..14520Clytia hemisphaericaexon
TCONS_00039049-exon-sc0002000-1510915933:13846..14159TCONS_00039049-exon-sc0002000-1510915933:13846..14159Clytia hemisphaericaexon
TCONS_00039049-exon-sc0002000-1491911889:19551..19595TCONS_00039049-exon-sc0002000-1491911889:19551..19595Clytia hemisphaericaexon
TCONS_00039049-exon-sc0002000-1491911889:14380..14520TCONS_00039049-exon-sc0002000-1491911889:14380..14520Clytia hemisphaericaexon
TCONS_00039049-exon-sc0002000-1491911889:13846..14159TCONS_00039049-exon-sc0002000-1491911889:13846..14159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002000supercontigsc0002000:13846..19595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42169	1.36547	0.169079	0.135051	10.3387	10.2855	7.91091	3.48308	3.5932	7.5901	5.0737	1.79108	0	2.8218	2.23033	2.19559	2.14541	2.40682	2.46101	4.53373	1.54619	0.847471	1.46555	2.27259	1.90503	1.65329	2.35684	1.64935	1.68127	2.21365
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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