TCONS_00039046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039046
Unique NameTCONS_00039046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039046 ID=TCONS_00039046|Name=TCONS_00039046|organism=Clytia hemisphaerica|type=transcript|length=380bp
GACGTAAAGCTGAAGAAGACGTCAAATTGCAAGGTCCACTTCAAACCGTC
GAAAATATAATATTTGACGTCATTGACGACAAGATGGTGTACGAAGCTGC
AAAGATCACTCGTGGTGGTTCCGGACCCTCGGGCTTGGATGCGGACCGAT
GGAGACGAATCCTCGTATCCAGAGACTACGGAGACACGGGTACAGACCTC
CGAAAATCAGTTGCAGCGCTCATCAGAAAGATATGCTCCATCGATGTTAA
GGATTCAACGTTAGCACCACTTTTTGCTTCACGTCTTGTACCTCTCAACA
AGAACCCTGGACTTAGACTGATAGGTGTTGGAGAAGTCCTCCGACGAATC
ATGGGGAAAGTTGTGATGGCCGCATTCTCT
Run BLAST on NCBI

protein sequence of TCONS_00039046-protein

>TCONS_00039046-protein ID=TCONS_00039046-protein|Name=TCONS_00039046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
RKAEEDVKLQGPLQTVENIIFDVIDDKMVYEAAKITRGGSGPSGLDADRW
RRILVSRDYGDTGTDLRKSVAALIRKICSIDVKDSTLAPLFASRLVPLNK
NPGLRLIGVGEVLRRIMGKVVMAAFS
Run BLAST on NCBI

transcript from alignment at sc0001999:26061..26440

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039046 ID=TCONS_00039046|Name=TCONS_00039046|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at sc0001999:26061..26440 (Clytia hemisphaerica)
AGAGAATGCGGCCATCACAACTTTCCCCATGATTCGTCGGAGGACTTCTC
CAACACCTATCAGTCTAAGTCCAGGGTTCTTGTTGAGAGGTACAAGACGT
GAAGCAAAAAGTGGTGCTAACGTTGAATCCTTAACATCGATGGAGCATAT
CTTTCTGATGAGCGCTGCAACTGATTTTCGGAGGTCTGTACCCGTGTCTC
CGTAGTCTCTGGATACGAGGATTCGTCTCCATCGGTCCGCATCCAAGCCC
GAGGGTCCGGAACCACCACGAGTGATCTTTGCAGCTTCGTACACCATCTT
GTCGTCAATGACGTCAAATATTATATTTTCGACGGTTTGAAGTGGACCTT
GCAATTTGACGTCTTCTTCAGCTTTACGTC

Coding sequence (CDS) from alignment at sc0001999:26061..26440

>TCONS_00039046 ID=TCONS_00039046|Name=TCONS_00039046|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0001999:26061..26440 (Clytia hemisphaerica)
AGAGAATGCGGCCATCACAACTTTCCCCATGATTCGTCGGAGGACTTCTC
CAACACCTATCAGTCTAAGTCCAGGGTTCTTGTTGAGAGGTACAAGACGT
GAAGCAAAAAGTGGTGCTAACGTTGAATCCTTAACATCGATGGAGCATAT
CTTTCTGATGAGCGCTGCAACTGATTTTCGGAGGTCTGTACCCGTGTCTC
CGTAGTCTCTGGATACGAGGATTCGTCTCCATCGGTCCGCATCCAAGCCC
GAGGGTCCGGAACCACCACGAGTGATCTTTGCAGCTTCGTACACCATCTT
GTCGTCAATGACGTCAAATATTATATTTTCGACGGTTTGAAGTGGACCTT
GCAATTTGACGTCTTCTTCAGCTTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023498XLOC_023498Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039046-exon-sc0001999-1491911889:26061..26440TCONS_00039046-exon-sc0001999-1491911889:26061..26440Clytia hemisphaericaexon
TCONS_00039046-exon-sc0001999-1510915933:26061..26440TCONS_00039046-exon-sc0001999-1510915933:26061..26440Clytia hemisphaericaexon
TCONS_00039046-exon-sc0001999-1575043694:26061..26440TCONS_00039046-exon-sc0001999-1575043694:26061..26440Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039046-proteinTCONS_00039046-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001999supercontigsc0001999:26061..26440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.24483	0.809272	1.87929	2.9877	1.11915	0.663276	1.86717	1.99774	1.049	3.03182	0.630591	1.38175	0.551933	1.00308	1.06029	1.13785	2.02473	0.957824	0.220548	0.692361	0.401192	1.17412	0.237884	0.648812	1.33652	1.98802	0.284486	0.910832	0	0.469234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top