TCONS_00039044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039044
Unique NameTCONS_00039044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039044 ID=TCONS_00039044|Name=TCONS_00039044|organism=Clytia hemisphaerica|type=transcript|length=376bp
TACCGCTGGTGCTAAAGCATAGTAAGTAGCCCATAAAATTACAACCATCC
AGCATATTCCAGGGAAAAGACACCACTTCATTAACTCTTCCGTGAAGGAC
ATAATGAATCATCCTAAGGTTTGCTAAAATTTAAgcttgaaagttgaaaa
tacgTCCACTCCACTCCCTTGCTTGCCTtgactaaaataaaaatttcgat
CCAGTTGACCTACATTGAGAATGCTAGtagattttttcaagtaaataaaT
AATTCGATATAGGTGATATTGCTGATATTGCTCCACAGTATGGTCTATTT
TTTTTCCCGCCAATACGCAAACATACAGCAAACACGGAATTCCCCACAAa
tagctacacgttttttttttataagg
Run BLAST on NCBI

transcript from alignment at sc0001999:22494..22869

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039044 ID=TCONS_00039044|Name=TCONS_00039044|organism=Clytia hemisphaerica|type=transcript|length=376bp|location=Sequence derived from alignment at sc0001999:22494..22869 (Clytia hemisphaerica)
ccttataaaaaaaaaacgtgtagctatTTGTGGGGAATTCCGTGTTTGCT
GTATGTTTGCGTATTGGCGGGAAAAAAAATAGACCATACTGTGGAGCAAT
ATCAGCAATATCACCTATATCGAATTAtttatttacttgaaaaaatctaC
TAGCATTCTCAATGTAGGTCAACTGGatcgaaatttttattttagtcaAG
GCAAGCAAGGGAGTGGAGTGGAcgtattttcaactttcaagcTTAAATTT
TAGCAAACCTTAGGATGATTCATTATGTCCTTCACGGAAGAGTTAATGAA
GTGGTGTCTTTTCCCTGGAATATGCTGGATGGTTGTAATTTTATGGGCTA
CTTACTATGCTTTAGCACCAGCGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023496XLOC_023496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039044-exon-sc0001999-1491911889:22494..22869TCONS_00039044-exon-sc0001999-1491911889:22494..22869Clytia hemisphaericaexon
TCONS_00039044-exon-sc0001999-1510915933:22494..22869TCONS_00039044-exon-sc0001999-1510915933:22494..22869Clytia hemisphaericaexon
TCONS_00039044-exon-sc0001999-1575043694:22494..22869TCONS_00039044-exon-sc0001999-1575043694:22494..22869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001999supercontigsc0001999:22494..22869 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06221	0.414328	0.785992	0.470656	1.59819	1.35833	0.819382	3.06838	0.358041	1.33047	1.07616	0.424455	0.989017	0.293458	0.482525	0.258912	0.478437	0.817305	0	0	0	0.901685	0	1.10725	35.8053	28.2132	0	0.310883	0.943174	0.480473
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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