|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039040 ID=TCONS_00039040|Name=TCONS_00039040|organism=Clytia hemisphaerica|type=transcript|length=1151bp
AGAGGCCATTGTGGATTTCTTGGATTGGAGGTTTGAGAGTCATGTGATAA
TTGTATGGTTTGGCTCAATTGGTTGAAAACGAAACCAGAAGTGGTCAGGG
GAAAATATTGAGAATTAGCTGTTGTTGTGTCAATCTTTCCCAAattcaaa
aaaccctttttgcCATGAAAGTAattgccattttttgtttttattgacac
CCCTGGGGCATAAAGCTACCCATTGATGGCAAAAGatccaaaatttgcaa
aatgagCATTGACAACATCAATGTAAAGGCAGACCCAATGACATGGGTTT
TGGAAAAACTTCGAAAtgtaatatctcgagtttgaaaagtaTGTATTTGA
GAGGTCGATGATCCCTCACTAGATTGAGAATTTTATGAGGGATAAGATAG
GGTTTATGAGGTTTGAATATGTATGACTTATGAAACTTGGCTGAATTTGT
GGGAACTTTAAGTTGATGACATCATTAAAGCAGAAAAAATGCAATCTCTT
GAGATCGGAAAGGAATggagaggtcgttgacccctcttTGGATCAGAAAT
TAAAACATCTCGTTACAAAGTTGATTCAGGTCATTTAAACATTGAACTTT
CTTCTAATGAGCATCCAGGTTTGGGTAGTTCATCTGGTCATGTTGTCTTT
AGAAGGTTTAAAATCTCCACCAAAAATTATGTTTGGGACAAGTTCTAGGA
CTGAAAGAGTATAAGTTTTAAACCTTTCAGTggtgtttgaaaatattttg
ctgtTGAGGCACTCCCATTGGTCTTGTCATTAGGTTGTCTGTACATCACT
AGGATTGCTAAGTTTTCAGTGCTTGAGTAAACAAAAAGAAGTTGTACCGG
GTGTGTAAAAAAAACGCCCCTATTTTACAATCTTTGACGTACATTTTTCT
ATTTAGTTGAActgcttgaatttttttgtgagtaTTGAACATTTTAATTC
Caaacatttctaaaattttggcagagttacctcaaatgaatttcaagtta
tgAATATTCTCGCAAGATCACtactttttgtgttgtttacagTAGCAAtt
aattgacgtcaaagaagACGTGTAACCTTTACATTCTAGCTTTCCTATCA
GCTGTAAAAACCGTTTTAAAGTGAAATTGAAGTTTAAGATAGATGTAGAG
G Run BLAST on NCBI transcript from alignment at sc0001999:8719..9869 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039040 ID=TCONS_00039040|Name=TCONS_00039040|organism=Clytia hemisphaerica|type=transcript|length=1151bp|location=Sequence derived from alignment at sc0001999:8719..9869 (Clytia hemisphaerica)
CCTCTACATCTATCTTAAACTTCAATTTCACTTTAAAACGGTTTTTACAG
CTGATAGGAAAGCTAGAATGTAAAGGTTACACGTcttctttgacgtcaat
taaTTGCTActgtaaacaacacaaaaagtaGTGATCTTGCGAGAATATTc
ataacttgaaattcatttgaggtaactctgccaaaattttagaaatgttt
GGAATTAAAATGTTCAAtactcacaaaaaaattcaagcagTTCAACTAAA
TAGAAAAATGTACGTCAAAGATTGTAAAATAGGGGCGTTTTTTTTACACA
CCCGGTACAACTTCTTTTTGTTTACTCAAGCACTGAAAACTTAGCAATCC
TAGTGATGTACAGACAACCTAATGACAAGACCAATGGGAGTGCCTCAaca
gcaaaatattttcaaacaccACTGAAAGGTTTAAAACTTATACTCTTTCA
GTCCTAGAACTTGTCCCAAACATAATTTTTGGTGGAGATTTTAAACCTTC
TAAAGACAACATGACCAGATGAACTACCCAAACCTGGATGCTCATTAGAA
GAAAGTTCAATGTTTAAATGACCTGAATCAACTTTGTAACGAGATGTTTT
AATTTCTGATCCAaagaggggtcaacgacctctccATTCCTTTCCGATCT
CAAGAGATTGCATTTTTTCTGCTTTAATGATGTCATCAACTTAAAGTTCC
CACAAATTCAGCCAAGTTTCATAAGTCATACATATTCAAACCTCATAAAC
CCTATCTTATCCCTCATAAAATTCTCAATCTAGTGAGGGATCATCGACCT
CTCAAATACAtacttttcaaactcgagatattacaTTTCGAAGTTTTTCC
AAAACCCATGTCATTGGGTCTGCCTTTACATTGATGTTGTCAATGctcat
tttgcaaattttggatCTTTTGCCATCAATGGGTAGCTTTATGCCCCAGG
GgtgtcaataaaaacaaaaaatggcaatTACTTTCATGgcaaaaagggtt
ttttgaatTTGGGAAAGATTGACACAACAACAGCTAATTCTCAATATTTT
CCCCTGACCACTTCTGGTTTCGTTTTCAACCAATTGAGCCAAACCATACA
ATTATCACATGACTCTCAAACCTCCAATCCAAGAAATCCACAATGGCCTC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039040-exon-sc0001999-1491911889:8719..9869 | TCONS_00039040-exon-sc0001999-1491911889:8719..9869 | Clytia hemisphaerica | exon |
| TCONS_00039040-exon-sc0001999-1510915933:8719..9869 | TCONS_00039040-exon-sc0001999-1510915933:8719..9869 | Clytia hemisphaerica | exon |
| TCONS_00039040-exon-sc0001999-1575043694:8719..9869 | TCONS_00039040-exon-sc0001999-1575043694:8719..9869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001999 | supercontig | sc0001999:8719..9869 . |
Blast
The following BLAST results are available for this feature:
|
