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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039037 ID=TCONS_00039037|Name=TCONS_00039037|organism=Clytia hemisphaerica|type=transcript|length=1682bp
GTCGAATCCAATATTGATGATAAGAATGACCCTGATTTTTTTCCTTCAGC
GCTAATTTCTACATTCAACGAAGGAGACATTGACATcttaaaagatgaaa
aatttgtGGTTTATGAAAGTATGTTGGACTATCTCATCAGTTTTATTAAA
TGTCCTCAATGTCAATCACCGGTAGCTGATAATCCAAAAATAAGTAAACT
TGGCACGAGCATTCATTATCATTTGATTTGCGAAAATAACCATTTTATCG
TCAACTGGAAAAGTCAACCTTTAATTGGAAAAATGCCAGCTTACAATCTA
CTTATTACAGCTTCAGTATTTTTTTCTGGTTCGTCGTTTGAGTCTTTCAG
AAAGCCTGTTGAATTCACGAATTTGAACTTTGTGAACTCGAATACCTTCT
ACAACATACAGCGAAACTTAGTTTTACCAACCATCACGAATCAATTCAAT
GAGGAAATAAAGAAGGCTCGCGATGAAATAAAATCTTCACCTGAAAAACA
AGTCATCCTTGGTGATGGGAGATTTGATTCACCTGATAAGTCAGCCAAAT
ATTGCACATATTCCGTACAATCCCCCTTTACAAAGAAAGTCGTTGCAACT
TCTACTGTTCAAACTACTAAAGGTAAAGGGTCGTCACCTTTAGAATtgga
atctttcaaaaaatgtttgacAGCTTTGGAAACATCTGGTTTTAACATCC
ACCTTATCGCGACCGACCGTAACAAACAAATTGCCAAGTGGCTGAGggaa
aatagaaagaaaatgcGGCATGGCTACGACACTTggcacttttcaaaaaa
tatcaaagctaAGCTGAGAAAAGCTGTCAAAAAGAAGGGCTGTAAGCTCA
TTCAAGAGTGGATTAAACCAATTGGGAACCACTTGTTCTGGTGCGCTGAG
AATTGTGTAGGAGATTCAGAGCTGCTCATTCAAATGTGGAAGTCTATTCT
TCACCATATCATCAACAAGCATCGTTTCAAGAGGATGTATCCTAAGTACC
CGAAATGTGGTCACAAACCATATACCAGAGCACAGGCTATAAAGAAAAAG
TGGGTGAAGAAAGATACCGAGGTTTACGATGAGATTGAGAAAGTTGTCAT
GGATAAAACCAATTTGAAGGATATGGAACAACTGACCGAACCATATCATA
CTGGAAGCTTAGAGGTGTTTCATTCCCTACTCAATTCGTATGCACCAAAA
AGAAAAGAGTTTGAGCTCAATGTGATGGATGCCAGAGTCAAATTAGCTGT
CCTTGACCACAATTCTAATGTTGACAGGAAGCAAGCTATCATCCAGAAAC
CAAGGAAAGGATCAGGCCAAAAGGGGGAGATGCAGTGGAAATTTGTGTCA
TCGAAGCTTTCAAAAGATTGGATTGCAAAGCCCAAAAAGGAGGTGAAGTC
AGTTTTGTTTATCGAAAATCTTTTGAGGGAAGTTGTTCAACGTAAGAAAA
ATGGTGAGAAGGCTTACAGAAAAGCTTCTGACTTAACCGATAGACTGACT
GCCCCTAAAAACATTGCTTTTACAGACAGACCAAGCACGAGTGAGATTTT
AGAGAAACATTTTACATTTAAAcgctttgataaaaaataatcgaCCATTT
CAAAACTTTAGTACATTTTTGTATAAATTTGACATtatatgaaatatttc
actatTTATAAAGTTGTTAaagtgaaaatgtt Run BLAST on NCBI protein sequence of TCONS_00039037-protein >TCONS_00039037-protein ID=TCONS_00039037-protein|Name=TCONS_00039037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
VESNIDDKNDPDFFPSALISTFNEGDIDILKDEKFVVYESMLDYLISFIK
CPQCQSPVADNPKISKLGTSIHYHLICENNHFIVNWKSQPLIGKMPAYNL
LITASVFFSGSSFESFRKPVEFTNLNFVNSNTFYNIQRNLVLPTITNQFN
EEIKKARDEIKSSPEKQVILGDGRFDSPDKSAKYCTYSVQSPFTKKVVAT
STVQTTKGKGSSPLELESFKKCLTALETSGFNIHLIATDRNKQIAKWLRE
NRKKMRHGYDTWHFSKNIKAKLRKAVKKKGCKLIQEWIKPIGNHLFWCAE
NCVGDSELLIQMWKSILHHIINKHRFKRMYPKYPKCGHKPYTRAQAIKKK
WVKKDTEVYDEIEKVVMDKTNLKDMEQLTEPYHTGSLEVFHSLLNSYAPK
RKEFELNVMDARVKLAVLDHNSNVDRKQAIIQKPRKGSGQKGEMQWKFVS
SKLSKDWIAKPKKEVKSVLFIENLLREVVQRKKNGEKAYRKASDLTDRLT
APKNIAFTDRPSTSEILEKHFTFKRFDKK Run BLAST on NCBI transcript from alignment at sc0001998:32593..34274 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039037 ID=TCONS_00039037|Name=TCONS_00039037|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at sc0001998:32593..34274 (Clytia hemisphaerica)
aacattttcacttTAACAACTTTATAAatagtgaaatatttcatataATG
TCAAATTTATACAAAAATGTACTAAAGTTTTGAAATGGtcgattattttt
tatcaaagcgTTTAAATGTAAAATGTTTCTCTAAAATCTCACTCGTGCTT
GGTCTGTCTGTAAAAGCAATGTTTTTAGGGGCAGTCAGTCTATCGGTTAA
GTCAGAAGCTTTTCTGTAAGCCTTCTCACCATTTTTCTTACGTTGAACAA
CTTCCCTCAAAAGATTTTCGATAAACAAAACTGACTTCACCTCCTTTTTG
GGCTTTGCAATCCAATCTTTTGAAAGCTTCGATGACACAAATTTCCACTG
CATCTCCCCCTTTTGGCCTGATCCTTTCCTTGGTTTCTGGATGATAGCTT
GCTTCCTGTCAACATTAGAATTGTGGTCAAGGACAGCTAATTTGACTCTG
GCATCCATCACATTGAGCTCAAACTCTTTTCTTTTTGGTGCATACGAATT
GAGTAGGGAATGAAACACCTCTAAGCTTCCAGTATGATATGGTTCGGTCA
GTTGTTCCATATCCTTCAAATTGGTTTTATCCATGACAACTTTCTCAATC
TCATCGTAAACCTCGGTATCTTTCTTCACCCACTTTTTCTTTATAGCCTG
TGCTCTGGTATATGGTTTGTGACCACATTTCGGGTACTTAGGATACATCC
TCTTGAAACGATGCTTGTTGATGATATGGTGAAGAATAGACTTCCACATT
TGAATGAGCAGCTCTGAATCTCCTACACAATTCTCAGCGCACCAGAACAA
GTGGTTCCCAATTGGTTTAATCCACTCTTGAATGAGCTTACAGCCCTTCT
TTTTGACAGCTTTTCTCAGCTtagctttgatattttttgaaaagtgccAA
GTGTCGTAGCCATGCCgcattttctttctattttccCTCAGCCACTTGGC
AATTTGTTTGTTACGGTCGGTCGCGATAAGGTGGATGTTAAAACCAGATG
TTTCCAAAGCTgtcaaacattttttgaaagattccaATTCTAAAGGTGAC
GACCCTTTACCTTTAGTAGTTTGAACAGTAGAAGTTGCAACGACTTTCTT
TGTAAAGGGGGATTGTACGGAATATGTGCAATATTTGGCTGACTTATCAG
GTGAATCAAATCTCCCATCACCAAGGATGACTTGTTTTTCAGGTGAAGAT
TTTATTTCATCGCGAGCCTTCTTTATTTCCTCATTGAATTGATTCGTGAT
GGTTGGTAAAACTAAGTTTCGCTGTATGTTGTAGAAGGTATTCGAGTTCA
CAAAGTTCAAATTCGTGAATTCAACAGGCTTTCTGAAAGACTCAAACGAC
GAACCAGAAAAAAATACTGAAGCTGTAATAAGTAGATTGTAAGCTGGCAT
TTTTCCAATTAAAGGTTGACTTTTCCAGTTGACGATAAAATGGTTATTTT
CGCAAATCAAATGATAATGAATGCTCGTGCCAAGTTTACTTATTTTTGGA
TTATCAGCTACCGGTGATTGACATTGAGGACATTTAATAAAACTGATGAG
ATAGTCCAACATACTTTCATAAACCacaaatttttcatcttttaagATGT
CAATGTCTCCTTCGTTGAATGTAGAAATTAGCGCTGAAGGAAAAAAATCA
GGGTCATTCTTATCATCAATATTGGATTCGAC Coding sequence (CDS) from alignment at sc0001998:32593..34274 >TCONS_00039037 ID=TCONS_00039037|Name=TCONS_00039037|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at sc0001998:32593..34274 (Clytia hemisphaerica)
ttattttttatcaaagcgTTTAAATGTAAAATGTTTCTCTAAAATCTCAC
TCGTGCTTGGTCTGTCTGTAAAAGCAATGTTTTTAGGGGCAGTCAGTCTA
TCGGTTAAGTCAGAAGCTTTTCTGTAAGCCTTCTCACCATTTTTCTTACG
TTGAACAACTTCCCTCAAAAGATTTTCGATAAACAAAACTGACTTCACCT
CCTTTTTGGGCTTTGCAATCCAATCTTTTGAAAGCTTCGATGACACAAAT
TTCCACTGCATCTCCCCCTTTTGGCCTGATCCTTTCCTTGGTTTCTGGAT
GATAGCTTGCTTCCTGTCAACATTAGAATTGTGGTCAAGGACAGCTAATT
TGACTCTGGCATCCATCACATTGAGCTCAAACTCTTTTCTTTTTGGTGCA
TACGAATTGAGTAGGGAATGAAACACCTCTAAGCTTCCAGTATGATATGG
TTCGGTCAGTTGTTCCATATCCTTCAAATTGGTTTTATCCATGACAACTT
TCTCAATCTCATCGTAAACCTCGGTATCTTTCTTCACCCACTTTTTCTTT
ATAGCCTGTGCTCTGGTATATGGTTTGTGACCACATTTCGGGTACTTAGG
ATACATCCTCTTGAAACGATGCTTGTTGATGATATGGTGAAGAATAGACT
TCCACATTTGAATGAGCAGCTCTGAATCTCCTACACAATTCTCAGCGCAC
CAGAACAAGTGGTTCCCAATTGGTTTAATCCACTCTTGAATGAGCTTACA
GCCCTTCTTTTTGACAGCTTTTCTCAGCTtagctttgatattttttgaaa
agtgccAAGTGTCGTAGCCATGCCgcattttctttctattttccCTCAGC
CACTTGGCAATTTGTTTGTTACGGTCGGTCGCGATAAGGTGGATGTTAAA
ACCAGATGTTTCCAAAGCTgtcaaacattttttgaaagattccaATTCTA
AAGGTGACGACCCTTTACCTTTAGTAGTTTGAACAGTAGAAGTTGCAACG
ACTTTCTTTGTAAAGGGGGATTGTACGGAATATGTGCAATATTTGGCTGA
CTTATCAGGTGAATCAAATCTCCCATCACCAAGGATGACTTGTTTTTCAG
GTGAAGATTTTATTTCATCGCGAGCCTTCTTTATTTCCTCATTGAATTGA
TTCGTGATGGTTGGTAAAACTAAGTTTCGCTGTATGTTGTAGAAGGTATT
CGAGTTCACAAAGTTCAAATTCGTGAATTCAACAGGCTTTCTGAAAGACT
CAAACGACGAACCAGAAAAAAATACTGAAGCTGTAATAAGTAGATTGTAA
GCTGGCATTTTTCCAATTAAAGGTTGACTTTTCCAGTTGACGATAAAATG
GTTATTTTCGCAAATCAAATGATAATGAATGCTCGTGCCAAGTTTACTTA
TTTTTGGATTATCAGCTACCGGTGATTGACATTGAGGACATTTAATAAAA
CTGATGAGATAGTCCAACATACTTTCATAAACCacaaatttttcatcttt
taagATGTCAATGTCTCCTTCGTTGAATGTAGAAATTAGCGCTGAAGGAA
AAAAATCAGGGTCATTCTTATCATCAATATTGGATTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039037-exon-sc0001998-1491911889:32593..34274 | TCONS_00039037-exon-sc0001998-1491911889:32593..34274 | Clytia hemisphaerica | exon |
| TCONS_00039037-exon-sc0001998-1510915933:32593..34274 | TCONS_00039037-exon-sc0001998-1510915933:32593..34274 | Clytia hemisphaerica | exon |
| TCONS_00039037-exon-sc0001998-1575043694:32593..34274 | TCONS_00039037-exon-sc0001998-1575043694:32593..34274 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001998 | supercontig | sc0001998:32593..34274 . |
Blast
The following BLAST results are available for this feature:
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