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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039031 ID=TCONS_00039031|Name=TCONS_00039031|organism=Clytia hemisphaerica|type=transcript|length=1138bp
NNGAAGCAGCCCcaccaaaaagaaaaacgagCAAGGGGACATGTGCCCCA
ATGCTGCAAGGTTCACAGAGTTAGGACCGTACCAGTAGAGCAAATGTTGA
GCAAAAGCCTGAAGGTGACAGGGAAAGTGGAGACGTGAAATGTGGTCCGC
AAGGACATTAAGTTTACCAGGAACATGAAACACCTTGATACCGAAGTTGA
AAGTAGCTGAGAGCCAAAAGGCATCTCTCAGGTGGGACATCATGTCTGGA
TCCTTAGTGGTACCTTTGTTCAACATTGCTACCGCTGCTGTGTTGTCGCA
GTGAACGTGGACCGCCTTATTCTGAAGAAGGGGAGCCCATCGTTTCAGGG
CTAGGACAACACATAAGGCCTCCTTGTAATTGATGTGAGAACCCGAAAAG
GATGGGTAGTCAACCAGGAGGTTGGAGTAGAACCAATCTCCTTGAAACTC
AGCTCCGATACCCATAGAGCATGCATCAGTATGTAGGTCAACAACCGGGC
GAGGGTCATGAAAACGACAGAACCCATTGAAGACCTCCAAGAACTGAAGC
CACCAATCAATATCCTTGAGAAGCTCCCCACTAAGACGACACTTTGCAGA
TTGCTTCGGCAGAGTGTTCATCAAGTCCAGGATCCTACGAAGAAATGTCC
TACCACCAAAGACAACCTTACAGGCCCAATTTAAGCGACCGGCTAACTGC
TGGAGTTGTCTTTTGGTAGTCCTCGTTTTTGATCGAAAGGACTGCAAGAA
AACCTTGAGGTCTGCAAGTTTCTTTGCGGAGAGAGAAAAGGGTTAATTTA
ACCGTATCAATCTCTACTCCCAAGAATACTAATTTCTGACAAGGGGGTAC
TAGTTTGGAGGGGCTGATTGTAAATCCCAGCTCCTATAAGAGGCTACGTA
AGGTCATATAAGCTGCCTCACACTCCTCTTGGGTTTTCCCGATTACAAGA
AAATCATCAAGATAGACAACCACATCCTTGAAACCACGGCGGGACATCAT
GCGACGAACCGATTGAGTAAGACGATGGAATATACCCGGGGCACTACTGC
CCCCAAAGGGTAAGCGAGTATCAACAAAGTTGGTAAAGTGATCATCTCCT
GTGAACTTCCACTTCAACCCTAGAGCATCATGGTTGGC Run BLAST on NCBI protein sequence of TCONS_00039031-protein >TCONS_00039031-protein ID=TCONS_00039031-protein|Name=TCONS_00039031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MNTLPKQSAKCRLSGELLKDIDWWLQFLEVFNGFCRFHDPRPVVDLHTDA
CSMGIGAEFQGDWFYSNLLVDYPSFSGSHINYKEALCVVLALKRWAPLLQ
NKAVHVHCDNTAAVAMLNKGTTKDPDMMSHLRDAFWLSATFNFGIKVFHV
PGKLNVLADHISRLHFPCHLQAFAQHLLYWYGPNSVNLAALGHMSPCSFF
FLVGLLX Run BLAST on NCBI transcript from alignment at sc0001996:36239..37376 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039031 ID=TCONS_00039031|Name=TCONS_00039031|organism=Clytia hemisphaerica|type=transcript|length=1138bp|location=Sequence derived from alignment at sc0001996:36239..37376 (Clytia hemisphaerica)
GCCAACCATGATGCTCTAGGGTTGAAGTGGAAGTTCACAGGAGATGATCA
CTTTACCAACTTTGTTGATACTCGCTTACCCTTTGGGGGCAGTAGTGCCC
CGGGTATATTCCATCGTCTTACTCAATCGGTTCGTCGCATGATGTCCCGC
CGTGGTTTCAAGGATGTGGTTGTCTATCTTGATGATTTTCTTGTAATCGG
GAAAACCCAAGAGGAGTGTGAGGCAGCTTATATGACCTTACGTAGCCTCT
TATAGGAGCTGGGATTTACAATCAGCCCCTCCAAACTAGTACCCCCTTGT
CAGAAATTAGTATTCTTGGGAGTAGAGATTGATACGGTTAAATTAACCCT
TTTCTCTCTCCGCAAAGAAACTTGCAGACCTCAAGGTTTTCTTGCAGTCC
TTTCGATCAAAAACGAGGACTACCAAAAGACAACTCCAGCAGTTAGCCGG
TCGCTTAAATTGGGCCTGTAAGGTTGTCTTTGGTGGTAGGACATTTCTTC
GTAGGATCCTGGACTTGATGAACACTCTGCCGAAGCAATCTGCAAAGTGT
CGTCTTAGTGGGGAGCTTCTCAAGGATATTGATTGGTGGCTTCAGTTCTT
GGAGGTCTTCAATGGGTTCTGTCGTTTTCATGACCCTCGCCCGGTTGTTG
ACCTACATACTGATGCATGCTCTATGGGTATCGGAGCTGAGTTTCAAGGA
GATTGGTTCTACTCCAACCTCCTGGTTGACTACCCATCCTTTTCGGGTTC
TCACATCAATTACAAGGAGGCCTTATGTGTTGTCCTAGCCCTGAAACGAT
GGGCTCCCCTTCTTCAGAATAAGGCGGTCCACGTTCACTGCGACAACACA
GCAGCGGTAGCAATGTTGAACAAAGGTACCACTAAGGATCCAGACATGAT
GTCCCACCTGAGAGATGCCTTTTGGCTCTCAGCTACTTTCAACTTCGGTA
TCAAGGTGTTTCATGTTCCTGGTAAACTTAATGTCCTTGCGGACCACATT
TCACGTCTCCACTTTCCCTGTCACCTTCAGGCTTTTGCTCAACATTTGCT
CTACTGGTACGGTCCTAACTCTGTGAACCTTGCAGCATTGGGGCACATGT
CCCCTTGctcgtttttctttttggtgGGGCTGCTTCNN Coding sequence (CDS) from alignment at sc0001996:36239..37376 >TCONS_00039031 ID=TCONS_00039031|Name=TCONS_00039031|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at sc0001996:36239..37376 (Clytia hemisphaerica)
ATGAACACTCTGCCGAAGCAATCTGCAAAGTGTCGTCTTAGTGGGGAGCT
TCTCAAGGATATTGATTGGTGGCTTCAGTTCTTGGAGGTCTTCAATGGGT
TCTGTCGTTTTCATGACCCTCGCCCGGTTGTTGACCTACATACTGATGCA
TGCTCTATGGGTATCGGAGCTGAGTTTCAAGGAGATTGGTTCTACTCCAA
CCTCCTGGTTGACTACCCATCCTTTTCGGGTTCTCACATCAATTACAAGG
AGGCCTTATGTGTTGTCCTAGCCCTGAAACGATGGGCTCCCCTTCTTCAG
AATAAGGCGGTCCACGTTCACTGCGACAACACAGCAGCGGTAGCAATGTT
GAACAAAGGTACCACTAAGGATCCAGACATGATGTCCCACCTGAGAGATG
CCTTTTGGCTCTCAGCTACTTTCAACTTCGGTATCAAGGTGTTTCATGTT
CCTGGTAAACTTAATGTCCTTGCGGACCACATTTCACGTCTCCACTTTCC
CTGTCACCTTCAGGCTTTTGCTCAACATTTGCTCTACTGGTACGGTCCTA
ACTCTGTGAACCTTGCAGCATTGGGGCACATGTCCCCTTGctcgtttttc
tttttggtgGGGCTGCTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039031-exon-sc0001996-1491911889:36239..37376 | TCONS_00039031-exon-sc0001996-1491911889:36239..37376 | Clytia hemisphaerica | exon |
| TCONS_00039031-exon-sc0001996-1510915933:36239..37376 | TCONS_00039031-exon-sc0001996-1510915933:36239..37376 | Clytia hemisphaerica | exon |
| TCONS_00039031-exon-sc0001996-1575043694:36239..37376 | TCONS_00039031-exon-sc0001996-1575043694:36239..37376 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001996 | supercontig | sc0001996:36239..37376 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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