TCONS_00039030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039030
Unique NameTCONS_00039030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039030 ID=TCONS_00039030|Name=TCONS_00039030|organism=Clytia hemisphaerica|type=transcript|length=717bp
GTCGGGGAAAAATTGTGACGGGGGATAAACTTTTGTTAACTTTTCATAAT
TTCCCCCCGAATCGTTCAAGTTTATCTCCTTTCCGAATCCTTTTACGAAT
TACTCAATGGATCTTTCTCTTTCCCTAATTGGAATTGTTATCTTCTCTCC
ATTGGGTGCAATTCACCAATAGCTGCGACATGACCTCTCCGATTTCACTA
AACTGGAAATCAAACGCAAGTGTAAAATTTGATGATACTCTGTGGTTATT
GTAAAGCCGCTCGTATATTTGGACATAAACGGATGATATACACTGTCCCG
GACATTTACTGACACACATAGACGTACATTTTTTATATTNTGATACTCTG
TGGTTATTGTAAAGCCGCTCGTATATTTGGACATAAACGGATGATATACA
CTGTCCCGGACATTTACTGACACACATAGacgtatattttttatatttca
catataatagaacacccctttctcagtgacccagtgaaGTTTTGAAGCCT
GAAGCCCACCGGGTCTGACTATAGGATCTCCAAAACTCACTAAGTGATAA
CTTTTAACTTCGTCGAGTAGGAATTCTTAAAAAAGCTAACGATTGTTGGC
CGGGGTAAGACCATAAATAAGATCTATGATTTGGGTTCTATGTAATTTCT
TTCACCGGGTTATCCATCAAGTGGagctgaccgggtcactgatatagggg
tataataaaaatatttN
Run BLAST on NCBI

protein sequence of TCONS_00039030-protein

>TCONS_00039030-protein ID=TCONS_00039030-protein|Name=TCONS_00039030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MCVSKCPGQCISSVYVQIYERLYNNHRVSXYKKCTSMCVSKCPGQCISSV
YVQIYERLYNNHRVSSNFTLAFDFQFSEIGEVMSQLLVNCTQWREDNNSN
Run BLAST on NCBI

transcript from alignment at sc0001996:32266..32982

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039030 ID=TCONS_00039030|Name=TCONS_00039030|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at sc0001996:32266..32982 (Clytia hemisphaerica)
NaaatatttttattatacccctatatcagtgacccggtcagctCCACTTG
ATGGATAACCCGGTGAAAGAAATTACATAGAACCCAAATCATAGATCTTA
TTTATGGTCTTACCCCGGCCAACAATCGTTAGCTTTTTTAAGAATTCCTA
CTCGACGAAGTTAAAAGTTATCACTTAGTGAGTTTTGGAGATCCTATAGT
CAGACCCGGTGGGCTTCAGGCTTCAAAACttcactgggtcactgagaaag
gggtgttctattatatgtgaaatataaaaaatatacgtCTATGTGTGTCA
GTAAATGTCCGGGACAGTGTATATCATCCGTTTATGTCCAAATATACGAG
CGGCTTTACAATAACCACAGAGTATCANAATATAAAAAATGTACGTCTAT
GTGTGTCAGTAAATGTCCGGGACAGTGTATATCATCCGTTTATGTCCAAA
TATACGAGCGGCTTTACAATAACCACAGAGTATCATCAAATTTTACACTT
GCGTTTGATTTCCAGTTTAGTGAAATCGGAGAGGTCATGTCGCAGCTATT
GGTGAATTGCACCCAATGGAGAGAAGATAACAATTCCAATTAGGGAAAGA
GAAAGATCCATTGAGTAATTCGTAAAAGGATTCGGAAAGGAGATAAACTT
GAACGATTCGGGGGGAAATTATGAAAAGTTAACAAAAGTTTATCCCCCGT
CACAATTTTTCCCCGAC

Coding sequence (CDS) from alignment at sc0001996:32266..32982

>TCONS_00039030 ID=TCONS_00039030|Name=TCONS_00039030|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0001996:32266..32982 (Clytia hemisphaerica)
ATGTGTGTCAGTAAATGTCCGGGACAGTGTATATCATCCGTTTATGTCCA
AATATACGAGCGGCTTTACAATAACCACAGAGTATCANAATATAAAAAAT
GTACGTCTATGTGTGTCAGTAAATGTCCGGGACAGTGTATATCATCCGTT
TATGTCCAAATATACGAGCGGCTTTACAATAACCACAGAGTATCATCAAA
TTTTACACTTGCGTTTGATTTCCAGTTTAGTGAAATCGGAGAGGTCATGT
CGCAGCTATTGGTGAATTGCACCCAATGGAGAGAAGATAACAATTCCAAT
TAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023482XLOC_023482Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039030-proteinTCONS_00039030-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039030-exon-sc0001996-1491911889:32266..32982TCONS_00039030-exon-sc0001996-1491911889:32266..32982Clytia hemisphaericaexon
TCONS_00039030-exon-sc0001996-1510915933:32266..32982TCONS_00039030-exon-sc0001996-1510915933:32266..32982Clytia hemisphaericaexon
TCONS_00039030-exon-sc0001996-1575043694:32266..32982TCONS_00039030-exon-sc0001996-1575043694:32266..32982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001996supercontigsc0001996:32266..32982 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.265436	0.1062	0.463156	0.174848	0.435522	0.392459	0.410775	0.508401	0.521624	0.29276	0.219655	0.366586	0.411798	1.38746	0.0632596	0.109054	0.264126	0.0568787	0.387518	0.091521	0.111437	0.534029	0.210019	0.205762	0.809011	1.31841	0.853673	0.460284	0.202975	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top