TCONS_00039028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039028
Unique NameTCONS_00039028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039028 ID=TCONS_00039028|Name=TCONS_00039028|organism=Clytia hemisphaerica|type=transcript|length=371bp
caccaaagtccataaacgGGCATTGAGAACATTACTTTGTGATTTCATAA
ATGACTATGAGGTTTTATTGCAAAACACAAAATGTAAAACGGTTCATGAA
ATTCAGCTTTGCTTTCTACTTTGTGAGGTTTACAAATCCGAAAATAAATT
AAATGCAAAGTTCATGCAACAAATCTATATAACGAAGGAAATAAAATTTA
ACTTCAGAAACAAAGTTTTGATGACAATACCTAAGGCTAAGTCTCAACGT
TTTGGAACTCAATCCTTTTTATTCCGAGGAAGCCTGATCTGGAATCAAAT
CCCAGAAAAAATTAAGCTCAAACCATCAATCTATTCTTTCAAATCCTCGC
TGAAAGAAATAAACCTTACAA
Run BLAST on NCBI

protein sequence of TCONS_00039028-protein

>TCONS_00039028-protein ID=TCONS_00039028-protein|Name=TCONS_00039028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
TKVHKRALRTLLCDFINDYEVLLQNTKCKTVHEIQLCFLLCEVYKSENKL
NAKFMQQIYITKEIKFNFRNKVLMTIPKAKSQRFGTQSFLFRGSLIWNQI
PEKIKLKPSIYSFKSSLKEINLT
Run BLAST on NCBI

transcript from alignment at sc0001996:25623..25993

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039028 ID=TCONS_00039028|Name=TCONS_00039028|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at sc0001996:25623..25993 (Clytia hemisphaerica)
TTGTAAGGTTTATTTCTTTCAGCGAGGATTTGAAAGAATAGATTGATGGT
TTGAGCTTAATTTTTTCTGGGATTTGATTCCAGATCAGGCTTCCTCGGAA
TAAAAAGGATTGAGTTCCAAAACGTTGAGACTTAGCCTTAGGTATTGTCA
TCAAAACTTTGTTTCTGAAGTTAAATTTTATTTCCTTCGTTATATAGATT
TGTTGCATGAACTTTGCATTTAATTTATTTTCGGATTTGTAAACCTCACA
AAGTAGAAAGCAAAGCTGAATTTCATGAACCGTTTTACATTTTGTGTTTT
GCAATAAAACCTCATAGTCATTTATGAAATCACAAAGTAATGTTCTCAAT
GCCcgtttatggactttggtg

Coding sequence (CDS) from alignment at sc0001996:25623..25993

>TCONS_00039028 ID=TCONS_00039028|Name=TCONS_00039028|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0001996:25623..25993 (Clytia hemisphaerica)
TGTAAGGTTTATTTCTTTCAGCGAGGATTTGAAAGAATAGATTGATGGTT
TGAGCTTAATTTTTTCTGGGATTTGATTCCAGATCAGGCTTCCTCGGAAT
AAAAAGGATTGAGTTCCAAAACGTTGAGACTTAGCCTTAGGTATTGTCAT
CAAAACTTTGTTTCTGAAGTTAAATTTTATTTCCTTCGTTATATAGATTT
GTTGCATGAACTTTGCATTTAATTTATTTTCGGATTTGTAAACCTCACAA
AGTAGAAAGCAAAGCTGAATTTCATGAACCGTTTTACATTTTGTGTTTTG
CAATAAAACCTCATAGTCATTTATGAAATCACAAAGTAATGTTCTCAATG
CCcgtttatggactttggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023480XLOC_023480Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039028-proteinTCONS_00039028-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039028-exon-sc0001996-1491911889:25623..25993TCONS_00039028-exon-sc0001996-1491911889:25623..25993Clytia hemisphaericaexon
TCONS_00039028-exon-sc0001996-1510915933:25623..25993TCONS_00039028-exon-sc0001996-1510915933:25623..25993Clytia hemisphaericaexon
TCONS_00039028-exon-sc0001996-1575043694:25623..25993TCONS_00039028-exon-sc0001996-1575043694:25623..25993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001996supercontigsc0001996:25623..25993 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65389	1.92202	1.34067	0.553524	1.18133	0.233375	1.77555	1.37919	1.29182	0.852899	0.443749	0.729259	0.728245	0	0.448179	0.0351827	0.657605	0	0	0.6954	0.965592	0.619676	0.502199	0.684857	0.470258	0.629541	1.50145	0.522095	0	0.247651
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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