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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039025 ID=TCONS_00039025|Name=TCONS_00039025|organism=Clytia hemisphaerica|type=transcript|length=1416bp
ttccACTGAACTGTCACCAAAGTCTACTGAATCCAGATCTGCCAGAGCTT
CAAAATGCCCTGGGTGTCACATTGAAAGATTAAGACATGATTTTGGCATA
CCTGGACCAAATTGCACAGGGATATCAGCCTCACCACCGAACGTTACGCA
TGAGCGAAGTAGACTTCCTGCCGCCCATAACCAAATTGATATGCTAAGGG
AAGAACTATCTTTATTGGAAAATGAGGAACAAACCCTCAGGCATGATATC
GAGGAGGAAGAAAAAAGGTTGGCTAGAGAAATTGAAAGCAAACGACTGGC
AATTCTTCGTTTGAGAGCCAGTAGACAAGCTGCACCCTCTCGAGTTTCAA
CCGCCCAATCTTCAAACNTTGTGGGATTGCACAGCCCCCACCAAGCtgtt
attttatattttgtaactgAAACATCGAATCTCACATGTGAGGAAAATTT
TGGTAagggttttttttgttttttcatgaataaaatatcagcttggattc
ccaggctacatcCGTCCTTCCGCACATCGTTTCGTCTGCTGTAAACCCTT
CACCTTTAGTGGGAACCCAACAGAATCTTGATTTTCAATCCACTCTCCAT
CCTCAACGTCCAACAATTAACCAAAGCGAGATCCTGCTACGTCCAACAAG
AACGAATGATCCAACTCGTGattattactgacggcgcgtcaatcgcttac
gggattggacaatggttgacaatagatcGTGACGTATACAACAATTCGAT
GACGCGGACGAATGAAAGTTtattttgggtggcttgataacactcgtaaa
ttctttatttttctagtgtattttgtttttttgttttagaagaaatacta
tacggtaaaaaataaggttttatactactatttttaaatttgatatttta
aatgcctattataaagaaaaattcgtaagtgggcggaaaaataaaaacgc
ctttgttttgaacgcccgactgcaaaaatctcgggattctgggacttctt
ttgagacgggggtttgacatgaaaacaaagagcttagtagaatagtagaa
tcgactttttcaaactttaaatacaatgtaagtatttttgtaatcaaaca
ttatattcagcaaatatattgaaaagtaatatttcgttATAAGCAAAGAT
AACTTGTTCGGAAATAAAAATCTTAATTCTTCAACCCCCGGATtattcat
cgcataatttctacgggaaatcgaaagtaatttcattcggcttgtgatgt
tcgagagcttggatgttgggaagctgcaggaataaaggtaaacaatttat
agtcttttttctgaaagaaaaattaacattagtctaggctgaaATACTCG
TGGCAGTCTGTGCTGCATTATGATGATGAATTTCGAGTTTTGCAGCACAC
ATATGGCTACCCATGG Run BLAST on NCBI protein sequence of TCONS_00039025-protein >TCONS_00039025-protein ID=TCONS_00039025-protein|Name=TCONS_00039025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
STELSPKSTESRSARASKCPGCHIERLRHDFGIPGPNCTGISASPPNVTH
ERSRLPAAHNQIDMLREELSLLENEEQTLRHDIEEEEKRLAREIESKRLA
ILRLRASRQAAPSRVSTAQSSNXVGLHSPHQAVILYFVTETSNLTCEENF
GKGFFCFFMNKISAWIPRLHPSFRTSFRLL Run BLAST on NCBI transcript from alignment at sc0001996:27808..29855+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039025 ID=TCONS_00039025|Name=TCONS_00039025|organism=Clytia hemisphaerica|type=transcript|length=2048bp|location=Sequence derived from alignment at sc0001996:27808..29855+ (Clytia hemisphaerica)
ttccACTGAACTGTCACCAAAGTCTACTGAATCCAGATCTGCCAGAGCTT
CAAAATGCCCTGGGTGTCACATTGAAAGATTAAGACATGATTTTGGCATA
CCTGGACCAAATTGCACAGGGATATCAGCCTCACCACCGAACGTTACGCA
TGAGCGAAGTAGACTTCCTGCCGCCCATAACCAAATTGATATGCTAAGGG
AAGAACTATCTTTATTGGAAAATGAGGAACAAACCCTCAGGCATGATATC
GAGGAGGAAGAAAAAAGGTTGGCTAGAGAAATTGAAAGCAAACGACTGGC
AATTCTTCGTTTGAGAGCCAGTAGACAAGCTGCACCCTCTCGAGTTTCAA
CCGCCCAATCTTCAAACNTTGTGGGATTGCACAGCCCCCACCAAGCtgtt
attttatattttgtaactgAAACATCGAATCTCACATGTGAGGAAAATTT
TGGTAagggttttttttgttttttcatgaataaaatatcagcttggattc
ccaggctacatcCGTCCTTCCGCACATCGTTTCGTCTGCTGTAAACCCTT
CACCTTTAGTGGGAACCCAACAGAATCTTGATTTTCAATCCACTCTCCAT
CCTCAACGTCCAACAATTAACCAAAGCGAGATCCTGCTACGTCCAACAAG
AACGAATGATCCAACTCGTGGTAAGCCTCTTCGTATAGTTGATTTTGTTT
CGAGGCTACGTCCTTCAGAAGAAGGAAAAGTGTTTGCAAGTGATAATAAC
TGTGTTTTAAAACTTTCTCTGCAAGATACAAAACCGAAACTGTCGTCTGT
TACAGTAGAACAATTTAACATAGCTACCTTAGaattttttatgaactttt
gttttcaagtaagCTTTCCTCCATGCAGGAGATTAGGGAATACCTTGCCT
ACTCTGTTAAGGTTCTTGAACTGGCGACTAAAtacagcctagactaatgt
taaatttcttttccgcgcaaattcgtcacattttgtctcgataacctCGT
AACTACGGGACTTATCgttagaggcaatcgagcaagaacaatagaaaaaa
tctttatttggctctgtataaaaattgcaaaatagaaactcgcttaaatt
cacaatactgattctttaccccaaaacgaaacttttctattttgtaaatc
tttcttacacttccccatacgtaaaatatagagtactttcgttttccccc
caaACTTGCGAGGGAAAATTGTTAAGACCGCATGTTGTCCTCGCGGACTT
TCCCAGCataatttatttgtgtgatgtcataatgttattgttctcttctc
agattattactgacggcgcgtcaatcgcttacgggattggacaatggttg
acaatagatcGTGACGTATACAACAATTCGATGACGCGGACGAATGAAAG
TTtattttgggtggcttgataacactcgtaaattctttatttttctagtg
tattttgtttttttgttttagaagaaatactatacggtaaaaaataaggt
tttatactactatttttaaatttgatattttaaatgcctattataaagaa
aaattcgtaagtgggcggaaaaataaaaacgcctttgttttgaacgcccg
actgcaaaaatctcgggattctgggacttcttttgagacgggggtttgac
atgaaaacaaagagcttagtagaatagtagaatcgactttttcaaacttt
aaatacaatgtaagtatttttgtaatcaaacattatattcagcaaatata
ttgaaaagtaatatttcgttATAAGCAAAGATAACTTGTTCGGAAATAAA
AATCTTAATTCTTCAACCCCCGGATtattcatcgcataatttctacggga
aatcgaaagtaatttcattcggcttgtgatgttcgagagcttggatgttg
ggaagctgcaggaataaaggtaaacaatttatagtcttttttctgaaaga
aaaattaacattagtctaggctgaaATACTCGTGGCAGTCTGTGCTGCAT
TATGATGATGAATTTCGAGTTTTGCAGCACACATATGGCTACCCATGG Coding sequence (CDS) from alignment at sc0001996:27808..29855+ >TCONS_00039025 ID=TCONS_00039025|Name=TCONS_00039025|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0001996:27808..29855+ (Clytia hemisphaerica)
tccACTGAACTGTCACCAAAGTCTACTGAATCCAGATCTGCCAGAGCTTC
AAAATGCCCTGGGTGTCACATTGAAAGATTAAGACATGATTTTGGCATAC
CTGGACCAAATTGCACAGGGATATCAGCCTCACCACCGAACGTTACGCAT
GAGCGAAGTAGACTTCCTGCCGCCCATAACCAAATTGATATGCTAAGGGA
AGAACTATCTTTATTGGAAAATGAGGAACAAACCCTCAGGCATGATATCG
AGGAGGAAGAAAAAAGGTTGGCTAGAGAAATTGAAAGCAAACGACTGGCA
ATTCTTCGTTTGAGAGCCAGTAGACAAGCTGCACCCTCTCGAGTTTCAAC
CGCCCAATCTTCAAACNTTGTGGGATTGCACAGCCCCCACCAAGCtgtta
ttttatattttgtaactgAAACATCGAATCTCACATGTGAGGAAAATTTT
GGTAagggttttttttgttttttcatgaataaaatatcagcttggattcc
caggctacatcCGTCCTTCCGCACATCGTTTCGTCTGCTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039025-exon-sc0001996-1491911889:27808..28477 | TCONS_00039025-exon-sc0001996-1491911889:27808..28477 | Clytia hemisphaerica | exon |
| TCONS_00039025-exon-sc0001996-1510915933:27808..28477 | TCONS_00039025-exon-sc0001996-1510915933:27808..28477 | Clytia hemisphaerica | exon |
| TCONS_00039025-exon-sc0001996-1575043694:27808..28477 | TCONS_00039025-exon-sc0001996-1575043694:27808..28477 | Clytia hemisphaerica | exon |
| TCONS_00039025-exon-sc0001996-1491911889:29110..29855 | TCONS_00039025-exon-sc0001996-1491911889:29110..29855 | Clytia hemisphaerica | exon |
| TCONS_00039025-exon-sc0001996-1510915933:29110..29855 | TCONS_00039025-exon-sc0001996-1510915933:29110..29855 | Clytia hemisphaerica | exon |
| TCONS_00039025-exon-sc0001996-1575043694:29110..29855 | TCONS_00039025-exon-sc0001996-1575043694:29110..29855 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001996 | supercontig | sc0001996:27808..29855 + |
Blast
The following BLAST results are available for this feature:
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