TCONS_00039022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039022
Unique NameTCONS_00039022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039022 ID=TCONS_00039022|Name=TCONS_00039022|organism=Clytia hemisphaerica|type=transcript|length=731bp
NTCACctacaaaacaatgaaaatgttgatgtaATTTACCTTGACTTCAGC
AAGGCCTTTGACAAGGTGGACCATCAAATCTTGCTACACAAGCTAAAAAT
TAATGGAATCAAAGGACAACTATTGAACTGGATACAAACCTTCCTTACTG
AGAGATACCAAAAAGTTTCCATAAACACATTCCTGTCAGATAAAGCGAAA
GTTACAAGCAGAGTTCCACAAGGCTCAGTTCTGGGCCCCCTCTTGTTTCT
GGTAATGATTAGTGACATCAACGAAAAGATTAAACATTCCATCCTCTCAT
CTTTTGCTGACGACACAAGACTTATGAAGGCAATATCTTGCGCTGCAGGT
GTGAGTCTGCTTCAAGATGATCTAGACATTGTCTATGACTTGACATCCAT
CAACAATATGGAGctcaatggaaaaaagtttgaacacattgcatacggaa
aaaatgaacaacTGAAAGTACACTCAGTCTACAAATCAGATGTAAGTCTA
CAAATCAGATGTACAGCAgccaatcgaaataaaaagtgcAGTGAAAGACC
TGGGTATCCTACTCTCAAACAACCTGTCATATGAAATGCACATTCAAACG
ATCACTGACAGAGTCAGTGGTATTTATTCACATACAAACCAACGCCTGGG
AAGAAAATGCCACCTCAAACCAGTGAATACAACGAACAAGAACATTTGGA
AGAGCTGCCTTTCAGACACCGGTCCAAGACT
Run BLAST on NCBI

protein sequence of TCONS_00039022-protein

>TCONS_00039022-protein ID=TCONS_00039022-protein|Name=TCONS_00039022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
HLQNNENVDVIYLDFSKAFDKVDHQILLHKLKINGIKGQLLNWIQTFLTE
RYQKVSINTFLSDKAKVTSRVPQGSVLGPLLFLVMISDINEKIKHSILSS
FADDTRLMKAISCAAGVSLLQDDLDIVYDLTSINNMELNGKKFEHIAYGK
NEQLKVHSVYKSDVSLQIRCTAANRNKKCSERPGYPTLKQPVI
Run BLAST on NCBI

transcript from alignment at sc0001995:1924..2654

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039022 ID=TCONS_00039022|Name=TCONS_00039022|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0001995:1924..2654 (Clytia hemisphaerica)
AGTCTTGGACCGGTGTCTGAAAGGCAGCTCTTCCAAATGTTCTTGTTCGT
TGTATTCACTGGTTTGAGGTGGCATTTTCTTCCCAGGCGTTGGTTTGTAT
GTGAATAAATACCACTGACTCTGTCAGTGATCGTTTGAATGTGCATTTCA
TATGACAGGTTGTTTGAGAGTAGGATACCCAGGTCTTTCACTgcactttt
tatttcgattggcTGCTGTACATCTGATTTGTAGACTTACATCTGATTTG
TAGACTGAGTGTACTTTCAgttgttcattttttccgtatgcaatgtgttc
aaacttttttccattgagCTCCATATTGTTGATGGATGTCAAGTCATAGA
CAATGTCTAGATCATCTTGAAGCAGACTCACACCTGCAGCGCAAGATATT
GCCTTCATAAGTCTTGTGTCGTCAGCAAAAGATGAGAGGATGGAATGTTT
AATCTTTTCGTTGATGTCACTAATCATTACCAGAAACAAGAGGGGGCCCA
GAACTGAGCCTTGTGGAACTCTGCTTGTAACTTTCGCTTTATCTGACAGG
AATGTGTTTATGGAAACTTTTTGGTATCTCTCAGTAAGGAAGGTTTGTAT
CCAGTTCAATAGTTGTCCTTTGATTCCATTAATTTTTAGCTTGTGTAGCA
AGATTTGATGGTCCACCTTGTCAAAGGCCTTGCTGAAGTCAAGGTAAATt
acatcaacattttcattgttttgtagGTGAN

Coding sequence (CDS) from alignment at sc0001995:1924..2654

>TCONS_00039022 ID=TCONS_00039022|Name=TCONS_00039022|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0001995:1924..2654 (Clytia hemisphaerica)
TCATATGACAGGTTGTTTGAGAGTAGGATACCCAGGTCTTTCACTgcact
ttttatttcgattggcTGCTGTACATCTGATTTGTAGACTTACATCTGAT
TTGTAGACTGAGTGTACTTTCAgttgttcattttttccgtatgcaatgtg
ttcaaacttttttccattgagCTCCATATTGTTGATGGATGTCAAGTCAT
AGACAATGTCTAGATCATCTTGAAGCAGACTCACACCTGCAGCGCAAGAT
ATTGCCTTCATAAGTCTTGTGTCGTCAGCAAAAGATGAGAGGATGGAATG
TTTAATCTTTTCGTTGATGTCACTAATCATTACCAGAAACAAGAGGGGGC
CCAGAACTGAGCCTTGTGGAACTCTGCTTGTAACTTTCGCTTTATCTGAC
AGGAATGTGTTTATGGAAACTTTTTGGTATCTCTCAGTAAGGAAGGTTTG
TATCCAGTTCAATAGTTGTCCTTTGATTCCATTAATTTTTAGCTTGTGTA
GCAAGATTTGATGGTCCACCTTGTCAAAGGCCTTGCTGAAGTCAAGGTAA
ATtacatcaacattttcattgttttgtagGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023474XLOC_023474Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039022-proteinTCONS_00039022-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039022-exon-sc0001995-1491911889:1924..2654TCONS_00039022-exon-sc0001995-1491911889:1924..2654Clytia hemisphaericaexon
TCONS_00039022-exon-sc0001995-1510915933:1924..2654TCONS_00039022-exon-sc0001995-1510915933:1924..2654Clytia hemisphaericaexon
TCONS_00039022-exon-sc0001995-1575043694:1924..2654TCONS_00039022-exon-sc0001995-1575043694:1924..2654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001995supercontigsc0001995:1924..2654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.88713	2.79435	5.39907	4.6278	2.99969	3.15736	3.30441	2.83388	2.04797	3.23325	2.93333	3.66802	2.96315	3.622	1.75724	2.30224	2.33777	2.56101	2.52423	5.49486	4.93519	4.95636	1.07623	2.11744	2.35223	3.02828	3.90993	6.27832	3.52596	4.81926
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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