TCONS_00039021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039021
Unique NameTCONS_00039021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039021 ID=TCONS_00039021|Name=TCONS_00039021|organism=Clytia hemisphaerica|type=transcript|length=886bp
TGTTGTCGGGTGTTCGAAGTTAGAAATTTcaacacccgacagtcgggtgc
actTTGTCGGGTGCTACATCTTGGGCGCTCTTAACAACACCCGACATGTA
GCGGGCGCGGGTGGCGATTTCCCTAGGGCGGAAAAACGGTTTCTTTTTGC
TACCACCCGACGCCCCGCCTGTAGTTGGGTGCGCGCCATTTTTGACGAAA
TACTCTAATTACTCTCTCAAGGCCAGTCTCCACTtccgcgcgctgcgatc
gcatattttttggcttcaatccttttggcttggaaaaaagattacgtcat
aaaaatgtaacgcgcactcgaaaaagtgcgatcgagaAACGCATGCAATt
gcaagtggagaccgacctTTCTCGTCAAACCAATTCTTTGGTAGGTCAAA
CAATGTGAGTTCCGGTTCTCGGGCTTTGATGTTCTTGGGAGAAGTTAACG
GATTAAcgcttttcttttctttttatttatggGTGATAAACGACGGTAAA
ACGacgaagacaaataatagagaTGTTTCATCAATGATTCATTATCAACG
CAAACTTCACTAAGTGTACCACCACCATTCTTGTACAAGTAACCATTGCG
TACATACAAAATGTTTGGATGGCTGGGGACAACGTAATATACGTATTACC
TGGATAAACCAACACGTCAGCGTGTTTTGTCATCAGAATGTAAgactaaa
acgaaaaaaagaagagagaaaaagcgAGCGGAATGTCATGCCTCAAACCT
AAACACGGAGAAATAGATTGACCATCGAGTGCAGGCTCGAATTTAAGAAT
ATCGAAACATTGATATGATCAAAGTACAGAATCGAAAGAAAGACACGACA
AATCTTTTACGATAACGGCTAATTACAGTTCACCAC
Run BLAST on NCBI

transcript from alignment at sc0001995:10796..12669-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039021 ID=TCONS_00039021|Name=TCONS_00039021|organism=Clytia hemisphaerica|type=transcript|length=1874bp|location=Sequence derived from alignment at sc0001995:10796..12669- (Clytia hemisphaerica)
TGTTGTCGGGTGTTCGAAGTTAGAAATTTCAACACCCGACAGTCGGGTGC
ACTTTGTCGGGTGCTACATCTTGGGCGCTCTTAACAACACCCGACATGTA
GCGGGCGCGGGTGGCGATTTCCCTAGGGCGGAAAAACGGTTTCTTTTTGC
TACCACCCGACGCCCCGCCTGTAGTTGGGTGCGCGCCATTTTTGACGAAA
TACTCTAATTACTCTCTCAAGGCCAGTCTCCACTTCCGCGCGCTGCGATC
GCATATTTTTTGGCTTCAATCCTTTTGGCTTGGAAAAAAGATTACGTCAT
AAAAATGTAACGCGCACTCGAAAAAGTGCGATCGAGAAACGCATGCAATT
GCAAGTGGAGACCGACCTTTCTCGTCAAACCAATTCTTTGGTAGGTCAAA
CAATGTGAGTTCCGGTTCTCGGGCTTTGATGTTCTTGGGAGAAGTTAACG
GATTAACGCTTTTCTTTTCTTTTTATTTATGGGTGATAAACGACGGTAAA
ACGACGAAGACAAATAATAGAGATGTTTCATCAATGATTCATTATCAACG
CAAACTTCACTAAGGTAGGCTTTCAAAGTGCCCAGTAGAAAACTATTCTG
CTCTGGGGTATTAAAGTTATCTAGGTAGGTTTTCCCACTTTTACCTACCT
GGAAATCGTGTGTCTTTAAATTTTTAAGTAACGTTCAATTTGTCTGTGCT
GATTGAGTAACTTTGTCAACTGGACGCTATATATTACCTGGGTTTTCGTT
TTGTAACGACACACTATATACCGAATTTTTTGTTCAATCTATTTAGTGTA
CCACCACCATTCTTGTACAAGTAACCATTGCGTACATACAAAATGTTTGG
ATGGCTGGGGACAACGTGCGTGTTGCTCAAAAGAAGAAACTGGAACAACC
TTTTTTTATTGATTAACAATTTAGACAATGTTCAAACCAGTTCAGACGTT
ACAGTTTCATGTCATATCGTTCCGGTATAGTTTCCATTACGGATCGAGAG
TGTTCATATTGGTTTCGAAACGTTTCGGAGCAAGAAAACGGAGCAGTTCC
GTTCCGATGAAATTAGTGGAACAAAACCGTTTCGATCTGTTTTGCTTTGT
ATGTAACGTCTTCAAATTTTGGCGTTCACACGTTCACACAGAACCGTTTC
TTTTCGGAACAATACGGAACCGTAACGTCTGAACATGGTCTTACAAACAA
TCTTTGAAATACATACAATTAAAAATATGTAAAATTATAAATTATAAGGC
CATTTGATCATCAATAAATCCAACAATGCATTTCCTCTGTTTTCTTCCTG
AGAAGGAGATAGAAAGTAGAAAAATTAACTAATAGACTACCGCCCTCTAT
TTTAAATCTCTTGTCTATTCACAGCTAAGTATCCATTATGTCTGAGGTTA
TAAAATCCCGATGAAATATTCTTAAAAGTATCCTTAGATTAACCAATTTA
AAAAAAGTCATTCCTGTCTCCACGCACTTACGTACGTCGTTAGTAAACTT
ACAACTAGCTTTTAATGCAGAATCACGTATCTACACAGACCATTTAGAAC
GCCATAGAAATTACGTCATCATGAAACTAATTGTCAGATGAGATTGAGCC
ATTTATATTATGATATTAAAGGTAATATACGTATTACCTGGATAAACCAA
CACGTCAGCGTGTTTTGTCATCAGAATGTAAGACTAAAACGAAAAAAAGA
AGAGAGAAAAAGCGAGCGGAATGTCATGCCTCAAACCTAAACACGGAGAA
ATAGATTGACCATCGAGTGCAGGCTCGAATTTAAGAATATCGAAACATTG
ATATGATCAAAGTACAGAATCGAAAGAAAGACACGACAAATCTTTTACGA
TAACGGCTAATTACAGTTCACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023473XLOC_023473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039021-exon-sc0001995-1575043694:12106..12669TCONS_00039021-exon-sc0001995-1575043694:12106..12669Clytia hemisphaericaexon
TCONS_00039021-exon-sc0001995-1575043694:11805..11873TCONS_00039021-exon-sc0001995-1575043694:11805..11873Clytia hemisphaericaexon
TCONS_00039021-exon-sc0001995-1575043694:10796..11048TCONS_00039021-exon-sc0001995-1575043694:10796..11048Clytia hemisphaericaexon
TCONS_00039021-exon-sc0001995-1510915933:12106..12669TCONS_00039021-exon-sc0001995-1510915933:12106..12669Clytia hemisphaericaexon
TCONS_00039021-exon-sc0001995-1510915933:11805..11873TCONS_00039021-exon-sc0001995-1510915933:11805..11873Clytia hemisphaericaexon
TCONS_00039021-exon-sc0001995-1510915933:10796..11048TCONS_00039021-exon-sc0001995-1510915933:10796..11048Clytia hemisphaericaexon
TCONS_00039021-exon-sc0001995-1491911889:12106..12669TCONS_00039021-exon-sc0001995-1491911889:12106..12669Clytia hemisphaericaexon
TCONS_00039021-exon-sc0001995-1491911889:11805..11873TCONS_00039021-exon-sc0001995-1491911889:11805..11873Clytia hemisphaericaexon
TCONS_00039021-exon-sc0001995-1491911889:10796..11048TCONS_00039021-exon-sc0001995-1491911889:10796..11048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001995supercontigsc0001995:10796..12669 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.421482	0.313842	0.564015	0.500162	1.62461	1.35834	1.16506	1.5632	0.379325	1.05451	0.804499	0.57269	0.906755	1.04508	0.642876	0.988678	0.864051	1.00785	0.488301	1.17514	1.00898	0.489458	0.857204	1.2853	0.732009	0.572122	2.59135	2.91244	2.31627	1.52593
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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