TCONS_00039020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039020
Unique NameTCONS_00039020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039020 ID=TCONS_00039020|Name=TCONS_00039020|organism=Clytia hemisphaerica|type=transcript|length=916bp
CTCTTATCCATGAAGCAATTGTATCGCGTCCATCAGTAAAGTTAAATAGT
GCGAATGCATGTGACTCTGGGAACGAGTTTGGGCGCAACCTCGTCCCGTG
TATCCTAGGTTTTTTTACGTTACTGATCGATAGAAACGCCATTNTAAATA
GTGCGAATGCATGTGACTCTGGGAATAAGTTTGGGCGCAACCTCGTCCCG
TGTATCCTAGGTTTTTTTACGTTACTGATCGATAGAAACACCATTTACCT
GACATTAACCCTTTACCTTCGGGAGCCAACCTCTCATGTCAACTAAATAT
CTATCATCATTCTTTTTATTTAGAGTCACAAACAGAGAATGAATCAAATA
GCGAAACAGtcTTACATTCTGATGACAAAACACGCTGACGTGTTGGTTTA
TCCAGGAAGAAAACAGAGGAAATGCATTGTTGGATTTATTGATGATCAAA
TGGCcttataatttataattttacatatttttaattgtatgtatttcaaa
gattgtttgtaagaccatgttcagacgttacggttccgtattGTTCCGAA
AAGAAACGGTTCTGTGTGAACGTGTGAACGCCAAAATTTGAAGACGTTAc
atacaaagcaaaacagatcgaaacggttttgtTCCACTaatttcatcgga
acggaactgctccgttttcttgctccgaaacgtttcgaaaccaatatgaa
cactctcgatccgtaaTGGAAACTATACCGGAACGATATGACATGAAACT
GTAACGTCTGAACTGGTTTGAACATTGTCTAAATTGTTAATCAATAAAAA
AAGGTTGTTCCAGTTTCTTCTTTTGAGCAACACGCACGTTGTCCCCAGCC
ATCCAAACATTTTGTATGTACGCAATGGTTACTTGTACAAGAATGGTGGT
GGTACACTAAATAGAT
Run BLAST on NCBI

transcript from alignment at sc0001995:10355..11883+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039020 ID=TCONS_00039020|Name=TCONS_00039020|organism=Clytia hemisphaerica|type=transcript|length=1529bp|location=Sequence derived from alignment at sc0001995:10355..11883+ (Clytia hemisphaerica)
CTCTTATCCATGAAGCAATTGTATCGCGTCCATCAGTAAAGTTAAATAGT
GCGAATGCATGTGACTCTGGGAACGAGTTTGGGCGCAACCTCGTCCCGTG
TATCCTAGGTTTTTTTACGTTACTGATCGATAGAAACGCCATTNTAAATA
GTGCGAATGCATGTGACTCTGGGAATAAGTTTGGGCGCAACCTCGTCCCG
TGTATCCTAGGTTTTTTTACGTTACTGATCGATAGAAACACCATTTACCT
GACATTAACCCTTTACCTTCGGGAGCCAACCTCTCATGTCAACTAAATAT
CTATCATCATTCTTTTTATTTAGAGTCACAAACAGAGAATGAATCAAATA
GCGAAACAGGTAATTAATTAGATATTCACATTTTAGTGTGTTGAACTGTA
ATTAGCCGTTATCGTAANCAATTAGATATTTACATTTTAGCGTGGTGAAC
TGTAATTAGCCGTTATCGTAAAAGATTTGTCGTGTCTTTCTTTCGATTCT
GTACTTTGATCATATCAATGTTTCGATATTCTTAAATTCGAGCCTGCACT
CGATGGTCAATCTATTTCTCCGTGTTTAGGTTTGAGGCATGACATTCCGC
TcgctttttctctcttctttttttcgttttagtcTTACATTCTGATGACA
AAACACGCTGACGTGTTGGTTTATCCAGGTAATACGTATATTACCTTTAA
TATCATAATATAAATGGCTCAATCTCATCTGACAATTAGTTTCATGATGA
CGTAATTTCTATGGCGTTCTAAATGGTCTGTGTAGATACGTGATTCTGCA
TTAAAAGCTAGTTGTAAGTTTACTAACGACGTACGTAAGTGCGTGGAGAC
AGgaatgactttttttaaattggttAATCTAAGgatacttttaagaatat
ttcatcGGGATTTTATAACCTCAGACATAATGGATACTTAGCTGTGAATA
GACAAGAGATTTAAAATAGAGGGCGGTAGTCTATTAGTTAATTTTTCTAC
TTTCTATCTCCTTCTCAGGAAGAAAACAGAGGAAATGCATTGTTGGATTT
ATTGATGATCAAATGGCcttataatttataattttacatatttttaattg
tatgtatttcaaagattgtttgtaagaccatgttcagacgttacggttcc
gtattGTTCCGAAAAGAAACGGTTCTGTGTGAACGTGTGAACGCCAAAAT
TTGAAGACGTTAcatacaaagcaaaacagatcgaaacggttttgtTCCAC
Taatttcatcggaacggaactgctccgttttcttgctccgaaacgtttcg
aaaccaatatgaacactctcgatccgtaaTGGAAACTATACCGGAACGAT
ATGACATGAAACTGTAACGTCTGAACTGGTTTGAACATTGTCTAAATTGT
TAATCAATAAAAAAAGGTTGTTCCAGTTTCTTCTTTTGAGCAACACGCAC
GTTGTCCCCAGCCATCCAAACATTTTGTATGTACGCAATGGTTACTTGTA
CAAGAATGGTGGTGGTACACTAAATAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023472XLOC_023472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039020-exon-sc0001995-1491911889:10355..10713TCONS_00039020-exon-sc0001995-1491911889:10355..10713Clytia hemisphaericaexon
TCONS_00039020-exon-sc0001995-1510915933:10355..10713TCONS_00039020-exon-sc0001995-1510915933:10355..10713Clytia hemisphaericaexon
TCONS_00039020-exon-sc0001995-1575043694:10355..10713TCONS_00039020-exon-sc0001995-1575043694:10355..10713Clytia hemisphaericaexon
TCONS_00039020-exon-sc0001995-1491911889:10987..11032TCONS_00039020-exon-sc0001995-1491911889:10987..11032Clytia hemisphaericaexon
TCONS_00039020-exon-sc0001995-1510915933:10987..11032TCONS_00039020-exon-sc0001995-1510915933:10987..11032Clytia hemisphaericaexon
TCONS_00039020-exon-sc0001995-1575043694:10987..11032TCONS_00039020-exon-sc0001995-1575043694:10987..11032Clytia hemisphaericaexon
TCONS_00039020-exon-sc0001995-1491911889:11373..11883TCONS_00039020-exon-sc0001995-1491911889:11373..11883Clytia hemisphaericaexon
TCONS_00039020-exon-sc0001995-1510915933:11373..11883TCONS_00039020-exon-sc0001995-1510915933:11373..11883Clytia hemisphaericaexon
TCONS_00039020-exon-sc0001995-1575043694:11373..11883TCONS_00039020-exon-sc0001995-1575043694:11373..11883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001995supercontigsc0001995:10355..11883 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54916	0.641934	2.36496	2.61811	2.36641	1.49455	3.26248	3.92151	2.86629	3.20102	2.90689	3.34036	2.30914	2.25665	2.70652	2.88719	2.8382	3.69191	3.17874	3.50082	4.36371	3.99429	2.12456	3.06694	1.99161	2.1955	4.71141	5.81922	3.34075	3.13812
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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