TCONS_00039005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039005
Unique NameTCONS_00039005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039005 ID=TCONS_00039005|Name=TCONS_00039005|organism=Clytia hemisphaerica|type=transcript|length=553bp
aagcGCCAAATCCATATAAATCACGACAGATTTTCGCATGAACAGGTGCT
GCGTTACAGATTGTCCATAAACTAGGcgtaatattttggtcaatgaTACA
ACAcaatttgaaaagttctttacTGACTTTGAACATTTcatttaaatcat
tttcattgaaatttatAATGCGCACACTAGAGGATAATAATTTCCTCAAT
TCAATGCATTGCAGGTGGATCTCAAGTAATGGCTGTCTCAATTTTAATTT
GTCGATTTCATTGAAGATAAAGTAAATCAATTGAGGAAAGTTCCTTAGAA
AATTCAAGCTCTCTTTTCCTCTAAATCTAAATGTGAAGTCTTTATCACCT
TTTGAAAAGGACTAATTGAACCAACGTATAATTTTCTTCGATAAAAAGCT
TACAGTTCATATCATGATGAATAAAATccacaaatttaaaaaaatgggcT
CCTGCTGGAATATCTTTAAATGCTTTGGCATTTGAATAATTTGTTTCCGC
GGTGcatattttaaacaatttcaTAAAGTGATCTTTGACAGTGTTATTCT
TTA
Run BLAST on NCBI

transcript from alignment at sc0001986:13468..14020

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039005 ID=TCONS_00039005|Name=TCONS_00039005|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at sc0001986:13468..14020 (Clytia hemisphaerica)
TAAAGAATAACACTGTCAAAGATCACTTTAtgaaattgtttaaaatatgC
ACCGCGGAAACAAATTATTCAAATGCCAAAGCATTTAAAGATATTCCAGC
AGGAgcccatttttttaaatttgtggATTTTATTCATCATGATATGAACT
GTAAGCTTTTTATCGAAGAAAATTATACGTTGGTTCAATTAGTCCTTTTC
AAAAGGTGATAAAGACTTCACATTTAGATTTAGAGGAAAAGAGAGCTTGA
ATTTTCTAAGGAACTTTCCTCAATTGATTTACTTTATCTTCAATGAAATC
GACAAATTAAAATTGAGACAGCCATTACTTGAGATCCACCTGCAATGCAT
TGAATTGAGGAAATTATTATCCTCTAGTGTGCGCATTataaatttcaatg
aaaatgatttaaatgAAATGTTCAAAGTCAgtaaagaacttttcaaattg
TGTTGTAtcattgaccaaaatattacgCCTAGTTTATGGACAATCTGTAA
CGCAGCACCTGTTCATGCGAAAATCTGTCGTGATTTATATGGATTTGGCg
ctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023461XLOC_023461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039005-exon-sc0001986-1491911889:13468..14020TCONS_00039005-exon-sc0001986-1491911889:13468..14020Clytia hemisphaericaexon
TCONS_00039005-exon-sc0001986-1510915933:13468..14020TCONS_00039005-exon-sc0001986-1510915933:13468..14020Clytia hemisphaericaexon
TCONS_00039005-exon-sc0001986-1575043694:13468..14020TCONS_00039005-exon-sc0001986-1575043694:13468..14020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001986supercontigsc0001986:13468..14020 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103133	0	0	0	2.64253	0.549517	1.45853	1.86199	0.0869082	0.10765	0.522438	0.480802	0	0.142464	1.69831	0.754156	0.619372	0.476127	1.09633	1.14723	0.897433	1.02139	0.354751	0.96756	0.221459	0.59294	0.98991	0.301845	0.457878	0.583132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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