TCONS_00039000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039000
Unique NameTCONS_00039000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039000 ID=TCONS_00039000|Name=TCONS_00039000|organism=Clytia hemisphaerica|type=transcript|length=580bp
CCAGCCATCAGAAATGATGTCGACGTCAAAGTCAATGGATAGTCAATGCT
CTAAGCTACACGCCAGCGAGAGTCCAGTCAAGGAGAAGACTTCAATTAAA
TATCCACAGCGTTTCCAGCTTGATCTCGTCAATGGAGCCCAGTATTGGCA
ACTGGTACGTGCCTATCTTGAATACAACCTTGGGTTTAGAACGTTGAACG
ACGCCGTGGCTTTCTCGTTGTTTCAAACCTATGACAAATTTCAAGCCTCG
ATGAACAGCCCGAGACCACCAACGACGGCTGATCCAAAGATCGACGCCTC
TTTGATAGTAGTTAACAAACTACGTCCAAATTTTGATCTGCCTGGATTCT
TGAAAAAGTATCCGTCATGCGTCGAAACCATCAAACAAATACGCAAGAAA
ATTGGCGTCAAATTCAATGCTTCTATTTTGTAAATTTTTTCATATATATT
TTTCACTAAATGTCTTCACTGGAGTAGCTCTTACAAGAATCAAATCTGTG
CCTTTTTTACTGATGATTTTTTTATGAAATTTGGATAAGTATTGGCGATT
TCAACAGTCTACTGGTCTACTTGGtacaaa
Run BLAST on NCBI

protein sequence of TCONS_00039000-protein

>TCONS_00039000-protein ID=TCONS_00039000-protein|Name=TCONS_00039000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
QPSEMMSTSKSMDSQCSKLHASESPVKEKTSIKYPQRFQLDLVNGAQYWQ
LVRAYLEYNLGFRTLNDAVAFSLFQTYDKFQASMNSPRPPTTADPKIDAS
LIVVNKLRPNFDLPGFLKKYPSCVETIKQIRKKIGVKFNASIL
Run BLAST on NCBI

transcript from alignment at sc0001985:23326..24021-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039000 ID=TCONS_00039000|Name=TCONS_00039000|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at sc0001985:23326..24021- (Clytia hemisphaerica)
CCAGCCATCAGAAATGATGTCGACGTCAAAGTCAATGGATAGTCAATGCT
CTAAGCTACACGGTAAGTTCATGTCATTTTTCTATTCTGAATATAGTGAG
CGTCATATAAACGAGTTAAAGCAAAGCATAAGCACTTGTGGTATGGAAAA
TTGACATAAGGTATTTTCCCTATTTCAGCCAGCGAGAGTCCAGTCAAGGA
GAAGACTTCAATTAAATATCCACAGCGTTTCCAGCTTGATCTCGTCAATG
GAGCCCAGTATTGGCAACTGGTACGTGCCTATCTTGAATACAACCTTGGG
TTTAGAACGTTGAACGACGCCGTGGCTTTCTCGTTGTTTCAAACCTATGA
CAAATTTCAAGCCTCGATGAACAGCCCGAGACCACCAACGACGGCTGATC
CAAAGATCGACGCCTCTTTGATAGTAGTTAACAAACTACGTCCAAATTTT
GATCTGCCTGGATTCTTGAAAAAGTATCCGTCATGCGTCGAAACCATCAA
ACAAATACGCAAGAAAATTGGCGTCAAATTCAATGCTTCTATTTTGTAAA
TTTTTTCATATATATTTTTCACTAAATGTCTTCACTGGAGTAGCTCTTAC
AAGAATCAAATCTGTGCCTTTTTTACTGATGATTTTTTTATGAAATTTGG
ATAAGTATTGGCGATTTCAACAGTCTACTGGTCTACTTGGTACAAA

Coding sequence (CDS) from alignment at sc0001985:23326..24021-

>TCONS_00039000 ID=TCONS_00039000|Name=TCONS_00039000|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0001985:23326..24021- (Clytia hemisphaerica)
CCAGCGAGAGTCCAGTCAAGGAGAAGACTTCAATTAAATATCCACAGCGT
TTCCAGCTTGATCTCGTCAATGGAGCCCAGTATTGGCAACTGGTACGTGC
CTATCTTGAATACAACCTTGGGTTTAGAACGTTGAACGACGCCGTGGCTT
TCTCGTTGTTTCAAACCTATGACAAATTTCAAGCCTCGATGAACAGCCCG
AGACCACCAACGACGGCTGATCCAAAGATCGACGCCTCTTTGATAGTAGT
TAACAAACTACGTCCAAATTTTGATCTGCCTGGATTCTTGAAAAAGTATC
CGTCATGCGTCGAAACCATCAAACAAATACGCAAGAAAATTGGCGTCAAA
TTCAATGCTTCTATTTTGTAACAGCCATCAGAAATGATGTCGACGTCAAA
GTCAATGGATAGTCAATGCTCTAAGCTACACGCCAGCGAGAGTCCAGTCA
AGGAGAAGACTTCAATTAAATATCCACAGCGTTTCCAGCTTGATCTCGTC
AATGGAGCCCAGTATTGGCAACTGGTACGTGCCTATCTTGAATACAACCT
TGGGTTTAGAACGTTGAACGACGCCGTGGCTTTCTCGTTGTTTCAAACCT
ATGACAAATTTCAAGCCTCGATGAACAGCCCGAGACCACCAACGACGGCT
GATCCAAAGATCGACGCCTCTTTGATAGTAGTTAACAAACTACGTCCAAA
TTTTGATCTGCCTGGATTCTTGAAAAAGTATCCGTCATGCGTCGAAACCA
TCAAACAAATACGCAAGAAAATTGGCGTCAAATTCAATGCTTCTATTTTG
TAACAGCCATCAGAAATGATGTCGACGTCAAAGTCAATGGATAGTCAATG
CTCTAAGCTACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023456XLOC_023456Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039000-proteinTCONS_00039000-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039000-exon-sc0001985-1575043694:23960..24021TCONS_00039000-exon-sc0001985-1575043694:23960..24021Clytia hemisphaericaexon
TCONS_00039000-exon-sc0001985-1575043694:23326..23843TCONS_00039000-exon-sc0001985-1575043694:23326..23843Clytia hemisphaericaexon
TCONS_00039000-exon-sc0001985-1510915933:23960..24021TCONS_00039000-exon-sc0001985-1510915933:23960..24021Clytia hemisphaericaexon
TCONS_00039000-exon-sc0001985-1510915933:23326..23843TCONS_00039000-exon-sc0001985-1510915933:23326..23843Clytia hemisphaericaexon
TCONS_00039000-exon-sc0001985-1491911889:23960..24021TCONS_00039000-exon-sc0001985-1491911889:23960..24021Clytia hemisphaericaexon
TCONS_00039000-exon-sc0001985-1491911889:23326..23843TCONS_00039000-exon-sc0001985-1491911889:23326..23843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001985supercontigsc0001985:23326..24021 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.128959	0.509525	0.860608	1.72648	0.161167	0.798524	1.45325	0.127375	0.0635987	0.0660479	0	0.23309	0.0717871	0.0735794	0	0	0.0924579	0	0.109644	0.0996827	0.102671	0	0.524496	0.139939	0.106139	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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