TCONS_00038999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038999
Unique NameTCONS_00038999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038999 ID=TCONS_00038999|Name=TCONS_00038999|organism=Clytia hemisphaerica|type=transcript|length=717bp
TTTGACtatatttctcaattttttggtgtttctgTTCTCCTCCTTCCATT
GTTACACAACCTAAACCCATTCCGTATTCTCTCAAGCAAGTTTCCGCATG
TACTGGTGCAACATTACAAACAGTCCACATACTTGGTGTCACCGATTTAT
TAAATAAACAACAGCTAACAAAAAGTTTCCGCGCTGAATTTTTCATATCT
AACAATATGTCCTCATCAAAACTAGTAATGCGAACCATGTAGCTAATAAT
TTTACGATGTTGCACGGAAATGAAATGAAACTGTGCTAATCGTTGCTTAG
AACGGGCAGAGATATTCTTGTTTATCAACAACGAGATTAGACGAGGAAAG
TTTTTCATATATGCAAAGCTTTCCTTTCCACGAAACCGGAATCGAAAATC
CTTCTCAATATTGCCAGAATTTTCATTAAACCAttgaacaattttctttt
tcagaaaattacagTTCATACCGTGATGAACAAATGAAAGAAACTCctga
aaaatgttattttctggTATTTCATCAACATTCTTACAAAATCCGATTTT
TGCCTCAGCAAAAACAACTCTTAATATCGCCATAGATAAATCTTTGCAAG
TATTGTTTTTAAGGTGCAGTGGTTCACATTTTATACGATCAACATATTCT
TCAACTAATGGCTCAAACTCTTGCCTACATTTTAATGTCCTAATGTAAGT
TGTCAGTAAATTTCTTT
Run BLAST on NCBI

protein sequence of TCONS_00038999-protein

>TCONS_00038999-protein ID=TCONS_00038999-protein|Name=TCONS_00038999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
RNLLTTYIRTLKCRQEFEPLVEEYVDRIKCEPLHLKNNTCKDLSMAILRV
VFAEAKIGFCKNVDEIPENNIFQEFLSFVHHGMNCNFLKKKIVQWFNENS
GNIEKDFRFRFRGKESFAYMKNFPRLISLLINKNISARSKQRLAQFHFIS
VQHRKIISYMVRITSFDEDILLDMKNSARKLFVSCCLFNKSVTPSMWTVC
NVAPVHAETCLREYGMGLGCVTMEGGEQKHQKIEKYSQ
Run BLAST on NCBI

transcript from alignment at sc0001984:24252..24968

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038999 ID=TCONS_00038999|Name=TCONS_00038999|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at sc0001984:24252..24968 (Clytia hemisphaerica)
AAAGAAATTTACTGACAACTTACATTAGGACATTAAAATGTAGGCAAGAG
TTTGAGCCATTAGTTGAAGAATATGTTGATCGTATAAAATGTGAACCACT
GCACCTTAAAAACAATACTTGCAAAGATTTATCTATGGCGATATTAAGAG
TTGTTTTTGCTGAGGCAAAAATCGGATTTTGTAAGAATGTTGATGAAATA
ccagaaaataacatttttcagGAGTTTCTTTCATTTGTTCATCACGGTAT
GAActgtaattttctgaaaaagaaaattgttcaaTGGTTTAATGAAAATT
CTGGCAATATTGAGAAGGATTTTCGATTCCGGTTTCGTGGAAAGGAAAGC
TTTGCATATATGAAAAACTTTCCTCGTCTAATCTCGTTGTTGATAAACAA
GAATATCTCTGCCCGTTCTAAGCAACGATTAGCACAGTTTCATTTCATTT
CCGTGCAACATCGTAAAATTATTAGCTACATGGTTCGCATTACTAGTTTT
GATGAGGACATATTGTTAGATATGAAAAATTCAGCGCGGAAACTTTTTGT
TAGCTGTTGTTTATTTAATAAATCGGTGACACCAAGTATGTGGACTGTTT
GTAATGTTGCACCAGTACATGCGGAAACTTGCTTGAGAGAATACGGAATG
GGTTTAGGTTGTGTAACAATGGAAGGAGGAGAAcagaaacaccaaaaaat
tgagaaatataGTCAAA

Coding sequence (CDS) from alignment at sc0001984:24252..24968

>TCONS_00038999 ID=TCONS_00038999|Name=TCONS_00038999|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0001984:24252..24968 (Clytia hemisphaerica)
AGAAATTTACTGACAACTTACATTAGGACATTAAAATGTAGGCAAGAGTT
TGAGCCATTAGTTGAAGAATATGTTGATCGTATAAAATGTGAACCACTGC
ACCTTAAAAACAATACTTGCAAAGATTTATCTATGGCGATATTAAGAGTT
GTTTTTGCTGAGGCAAAAATCGGATTTTGTAAGAATGTTGATGAAATAcc
agaaaataacatttttcagGAGTTTCTTTCATTTGTTCATCACGGTATGA
ActgtaattttctgaaaaagaaaattgttcaaTGGTTTAATGAAAATTCT
GGCAATATTGAGAAGGATTTTCGATTCCGGTTTCGTGGAAAGGAAAGCTT
TGCATATATGAAAAACTTTCCTCGTCTAATCTCGTTGTTGATAAACAAGA
ATATCTCTGCCCGTTCTAAGCAACGATTAGCACAGTTTCATTTCATTTCC
GTGCAACATCGTAAAATTATTAGCTACATGGTTCGCATTACTAGTTTTGA
TGAGGACATATTGTTAGATATGAAAAATTCAGCGCGGAAACTTTTTGTTA
GCTGTTGTTTATTTAATAAATCGGTGACACCAAGTATGTGGACTGTTTGT
AATGTTGCACCAGTACATGCGGAAACTTGCTTGAGAGAATACGGAATGGG
TTTAGGTTGTGTAACAATGGAAGGAGGAGAAcagaaacaccaaaaaattg
agaaatataGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023455XLOC_023455Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038999-proteinTCONS_00038999-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038999-exon-sc0001984-1491911889:24252..24968TCONS_00038999-exon-sc0001984-1491911889:24252..24968Clytia hemisphaericaexon
TCONS_00038999-exon-sc0001984-1510915933:24252..24968TCONS_00038999-exon-sc0001984-1510915933:24252..24968Clytia hemisphaericaexon
TCONS_00038999-exon-sc0001984-1575043694:24252..24968TCONS_00038999-exon-sc0001984-1575043694:24252..24968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001984supercontigsc0001984:24252..24968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139676	0.204309	0	0.0773618	0	0.148845	0.448939	0.252175	0.0588512	0.0728967	0	0.186047	0.0464471	0.0482358	0.277595	0.63836	0.419417	0.322417	0.0742394	0.388431	0.607711	0.29642	0.3203	0.1456	0	0.133839	0.191524	0.408799	0	0.0789753
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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