|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038997 ID=TCONS_00038997|Name=TCONS_00038997|organism=Clytia hemisphaerica|type=transcript|length=1114bp
TGTATATCGAAAGGCTTTGAGTAAATATGGACTTTGGAATTAGCTTCGAG
TTGATCATGGCAAAGAATTTTGCTTATGTCTCTGATTTTGACACATCTGA
CCCAGTCATTAAGTACTGCTTATCCTGGATTTCCATATATGTTGCAACAG
AAGCAGCTGAACACTTAATCAATTCTTGGAATTTCCATAGAGTCCCTGGT
CCGAACGGTTGTGTTCCATTTCAGAATATGGTAGATACAAAGCAAACTGC
TGTCCTGGATGAAATGCTCATTCCAACAACACCCGAGGCTGTAAGGATGT
TTGAAGAAAATGGAGGAGCTCTAACAAGGAATGCTGATTTTGGGTATGAC
CCTTTGGGTGCTATTGACCATGCATTTCAATCCAGACATTGTGTGTTTCA
AGCAAACCAACCACTGGTAGAGACCTCTTCAGCTCTGTTGTACATGGAGA
CCACTTACCATTGGAAGAAGCTTTTAAATGTTTTTATGAACTTACAGTAA
ATTTGGCTGATCAATTTGTTCAGTAGTATTCAGGGTTCAATTATAAATTT
TAAAAAAAGGCAGCGCCGCAGGCGAAAACGTTTTCACTGTTTGAGAAGTA
TTTTTAGTATTTTGCGATGTTGTTTGGAAGAAAATGCGAAAGTATCTTTA
ATGCATTTCTCTAGAAAAGTGAAGTAGTGAGTTTATAAAGTTTTGAAGTA
TTGAGTTGATCAAGTTCCTTGAGTTGATAAAGCAATAGATAAACGAATGA
ATAAAGCTGCAAAGTAGTGAGCTTGTAAACTAAAGATAAACGATTGAATA
AAGTAGCAAGTCGATAACGCAATAGATAAACAAATGAATAAAGTTCCGAG
GTAGAGAGTTTATAAAGTATATAATAGACAAACGAATGAATGAAGTAGCA
AGATGGGTGTTTTTTTTAATTTTTTAGCTTCGCATTTTAGAGTTAGCAAA
TCTTTTTGGGTCGCTAAACCTTAAATACACTTCGCATTTTGCGAAGTGGG
AAGCTATAATTCGAACCCTGGTATTTTTAATATTTTTGGACCTACATCAG
AGGTCCTTTAAATTAACCCTTGTTTGTTCGTTCGTTTTATTATTTTTTAT
TTTTTACATCGTAC Run BLAST on NCBI protein sequence of TCONS_00038997-protein >TCONS_00038997-protein ID=TCONS_00038997-protein|Name=TCONS_00038997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MDFGISFELIMAKNFAYVSDFDTSDPVIKYCLSWISIYVATEAAEHLINS
WNFHRVPGPNGCVPFQNMVDTKQTAVLDEMLIPTTPEAVRMFEENGGALT
RNADFGYDPLGAIDHAFQSRHCVFQANQPLVETSSALLYMETTYHWKKLL
NVFMNLQ Run BLAST on NCBI transcript from alignment at sc0001984:11084..12197 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038997 ID=TCONS_00038997|Name=TCONS_00038997|organism=Clytia hemisphaerica|type=transcript|length=1114bp|location=Sequence derived from alignment at sc0001984:11084..12197 (Clytia hemisphaerica)
GTACGATGTAAAAAATAAAAAATAATAAAACGAACGAACAAACAAGGGTT
AATTTAAAGGACCTCTGATGTAGGTCCAAAAATATTAAAAATACCAGGGT
TCGAATTATAGCTTCCCACTTCGCAAAATGCGAAGTGTATTTAAGGTTTA
GCGACCCAAAAAGATTTGCTAACTCTAAAATGCGAAGCTAAAAAATTAAA
AAAAACACCCATCTTGCTACTTCATTCATTCGTTTGTCTATTATATACTT
TATAAACTCTCTACCTCGGAACTTTATTCATTTGTTTATCTATTGCGTTA
TCGACTTGCTACTTTATTCAATCGTTTATCTTTAGTTTACAAGCTCACTA
CTTTGCAGCTTTATTCATTCGTTTATCTATTGCTTTATCAACTCAAGGAA
CTTGATCAACTCAATACTTCAAAACTTTATAAACTCACTACTTCACTTTT
CTAGAGAAATGCATTAAAGATACTTTCGCATTTTCTTCCAAACAACATCG
CAAAATACTAAAAATACTTCTCAAACAGTGAAAACGTTTTCGCCTGCGGC
GCTGCCTTTTTTTAAAATTTATAATTGAACCCTGAATACTACTGAACAAA
TTGATCAGCCAAATTTACTGTAAGTTCATAAAAACATTTAAAAGCTTCTT
CCAATGGTAAGTGGTCTCCATGTACAACAGAGCTGAAGAGGTCTCTACCA
GTGGTTGGTTTGCTTGAAACACACAATGTCTGGATTGAAATGCATGGTCA
ATAGCACCCAAAGGGTCATACCCAAAATCAGCATTCCTTGTTAGAGCTCC
TCCATTTTCTTCAAACATCCTTACAGCCTCGGGTGTTGTTGGAATGAGCA
TTTCATCCAGGACAGCAGTTTGCTTTGTATCTACCATATTCTGAAATGGA
ACACAACCGTTCGGACCAGGGACTCTATGGAAATTCCAAGAATTGATTAA
GTGTTCAGCTGCTTCTGTTGCAACATATATGGAAATCCAGGATAAGCAGT
ACTTAATGACTGGGTCAGATGTGTCAAAATCAGAGACATAAGCAAAATTC
TTTGCCATGATCAACTCGAAGCTAATTCCAAAGTCCATATTTACTCAAAG
CCTTTCGATATACA Coding sequence (CDS) from alignment at sc0001984:11084..12197 >TCONS_00038997 ID=TCONS_00038997|Name=TCONS_00038997|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0001984:11084..12197 (Clytia hemisphaerica)
TTACTGTAAGTTCATAAAAACATTTAAAAGCTTCTTCCAATGGTAAGTGG
TCTCCATGTACAACAGAGCTGAAGAGGTCTCTACCAGTGGTTGGTTTGCT
TGAAACACACAATGTCTGGATTGAAATGCATGGTCAATAGCACCCAAAGG
GTCATACCCAAAATCAGCATTCCTTGTTAGAGCTCCTCCATTTTCTTCAA
ACATCCTTACAGCCTCGGGTGTTGTTGGAATGAGCATTTCATCCAGGACA
GCAGTTTGCTTTGTATCTACCATATTCTGAAATGGAACACAACCGTTCGG
ACCAGGGACTCTATGGAAATTCCAAGAATTGATTAAGTGTTCAGCTGCTT
CTGTTGCAACATATATGGAAATCCAGGATAAGCAGTACTTAATGACTGGG
TCAGATGTGTCAAAATCAGAGACATAAGCAAAATTCTTTGCCATGATCAA
CTCGAAGCTAATTCCAAAGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038997-exon-sc0001984-1491911889:11084..12197 | TCONS_00038997-exon-sc0001984-1491911889:11084..12197 | Clytia hemisphaerica | exon |
| TCONS_00038997-exon-sc0001984-1510915933:11084..12197 | TCONS_00038997-exon-sc0001984-1510915933:11084..12197 | Clytia hemisphaerica | exon |
| TCONS_00038997-exon-sc0001984-1575043694:11084..12197 | TCONS_00038997-exon-sc0001984-1575043694:11084..12197 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001984 | supercontig | sc0001984:11084..12197 . |
Blast
The following BLAST results are available for this feature:
|
