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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038993 ID=TCONS_00038993|Name=TCONS_00038993|organism=Clytia hemisphaerica|type=transcript|length=1060bp
aattgatttttctcatcctatttttttagaaagaaaaactttataTCAAA
ATTATGTATTCAAAATGCAAGgagattttggttgttttcaatCATTGAAA
GATGGCTAACGATGGCTTCAATTTACAATTGGATGGTTTGGTGTTGGGTT
GAAATGTTTGGGATCTAATATatacAGTATCAAAACTCCACTGTGTGGTC
ACTGGGTTTATTTGAAATGAATCTTTTGTGGTATTTTGCTGTCATCTTTT
CCAACATCTTTTGTCAAACAGTTCATATCAAAAGCTTATTTATTTGGAAA
GGTAAGATTTCTTGGTGTTCGTCAATAGCCAATAGaacataaataaataa
ataataataatgatgatgCTTTATATTCCTTAAACATAGTATCATAGTTA
AGActttttcatttagatattcTTCGTCGTAGATTTTGGTTGACTCCTCT
GAATCTTCAGTGGATTCGTCAACACCATGAATAATTAGATTGCATGCCGT
GGATTGAATCTGTCGTTCTCCTGTTTTCCCTTCGAAGTACGTTTTCTATG
TTCTTCTCGATTTACCTCGACGCGACTGCTGCGTAGTTTTGTGAtttatt
ttctcctttcttctcaATTATGTCTTCCATCTTCTTTTCGATTGTTGCCA
TTCTGGTCTCAAAGCTATCCTTTATTTCGCTGGTCATTGTGTTAACGTCT
TTGGACTTAAGTTGAGTGATTTCTACGTCCTGGGATTTCATTATGTTTTC
GCAAGTTTTTATCTCCTTTTGGAATCCTGAAACTGTTGATGTTTCACATG
AATTGACCCGTTCCAATAGATCAGGAGTGATCACGACACAGTTTTGACAA
ATGAAAGCTCTCGATTTGTATGTTAGACATAATTGGATTTGATAGACGGG
GAGCTTTGAACAAATGTAGTGTACGATTCGATTTCACTTCTTAAATTCAA
GTGTGTCTTTGGATCTTCCTTCTTCACTTGTAACACATTCAGATGGGCTG
CAAAGGTCGTGAATTGATGCTGAATTCGGTTGTTTTCgtagattttcctg
aattttctcc Run BLAST on NCBI transcript from alignment at sc0001983:31542..33818- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038993 ID=TCONS_00038993|Name=TCONS_00038993|organism=Clytia hemisphaerica|type=transcript|length=2277bp|location=Sequence derived from alignment at sc0001983:31542..33818- (Clytia hemisphaerica)
AATTGATTTTTCTCATCCTATTTTTTTAGAAAGAAAAACTTTATATCAAA
ATTATGTATTCAAAATGCAAGGAGATTTTGGTTGTTTTCAATCATTGAAA
GATGGCTAACGATGGCTTCAATTTACAATTGGATGGTTTGGTGTTGGGTT
GAAATGTTTGGGATCTAATATGTAAGAAGGACGACCTCTTTCACATTTTG
AGGTTTTCTGAAGGGCAAGGGTGACGCATTTTCCACAGTGTTATTCCCCC
TTGATGAATCTGAAGATACGGAGTTGAATTTCATAAATACCCTAAGAATC
GGTCTTTCCTGTTTCATTTATTTACCATGACACATCTGTGGAATATTTTC
TTTCCAGTTAGGCATCTGTTCTACACCTATAGTACAATGAAGTATAAGCA
TTGATTTCAAAGCCCCAAATNATCTGTTCTACACCTATAGTACAATGAAG
TATAAGCATTGATTTCAAAGCCCCAAATGGGCTAGATCCGAAACTCCTGG
ATGGAAAATGAAGCCACTCGTGCCACTCGTCACCCGTTTGTTTTTCAAAC
AAAATTTCTAAATGTGGGGCAAGCTTAAGACTTCACTTTTTCGTTGCTTG
GGAAANGCCCCAAATGGGCTAGATCCGAAACTCCTGGATGGAAAATGAAG
CCACTCGTGCCACTCGTCACCCGTTTGTTTTTCAAACAAAATTTCTAAAT
GTGGGGTTGAAGATTCATCTCTAGCCCATTCGGGGCTTCAAACTCAATGA
GAATAAGTAACCTTCCCTTAACCTTCCCCTACATTTCTCCTTGCCTAAAG
ACAAATACGGCCAGCGCTTAATAAAAATACAACGAATTATATCAAGAAAA
TGCTGTGAATTTGCCACACAGCTCCGAGTTTGACACTTCCAGGACAATTA
TTAGGCCTATGGGTAATAGGATTATCATCAAAAGAAGACAGATCTCGGGC
TAATCTTCTTTGTCTGAATTTTCATTCATTCAAACCCTAAAATTGGATTA
AGTTATCGTAAATTTTGTCTTTGAAATTTAACAAAGGTCTCTTTTTTTCA
AAATTAAAAAAAACCCATATATTATGAAATGATATATTATTTAATGTTTT
GACATAAAGTGATAGAAAATTGTAAAAATCGCATTAGTTTTAAATGAGGT
TGAGGGTAATTCATTTGACTTCAAAACCCAGAGAGAAATGTTCAGTTATT
TTACCATTTAAACTCTTTGCAGATCTATTCAAAATGCGGGCTGCTTTCTA
GCACATTAAACCCACATAGCTCAATATTATCCCTCAGCCAGTGTCAAATT
ACCCCAATATTTGAACTTCTCATTTCAGCTTCTAGAATTAATTTATTTTT
CTCCTCTGATGTTTTCTGCTGATTTTTTTCTTTTTCAGATACAGTATCAA
AACTCCACTGTGTGGTCACTGGGTTTATTTGAAATGAATCTTTTGTGGTA
TTTTGCTGTCATCTTTTCCAACATCTTTTGTCAAACAGTTCATATCAAAA
GCTTATTTATTTGGAAAGGTAAGATTTCTTGGTGTTCGTCAATAGCCAAT
AGAACATAAATAAATAAATAATAATAATGATGATGCTTTATATTCCTTAA
ACATAGTATCATAGTTAAGACTTTTTCATTTAGATATTCTTCGTCGTAGA
TTTTGGTTGACTCCTCTGAATCTTCAGTGGATTCGTCAACACCATGAATA
ATTAGATTGCATGCCGTGGATTGAATCTGTCGTTCTCCTGTTTTCCCTTC
GAAGTACGTTTTCTATGTTCTTCTCGATTTACCTCGACGCGACTGCTGCG
TAGTTTTGTGATTTATTTTCTCCTTTCTTCTCAATTATGTCTTCCATCTT
CTTTTCGATTGTTGCCATTCTGGTCTCAAAGCTATCCTTTATTTCGCTGG
TCATTGTGTTAACGTCTTTGGACTTAAGTTGAGTGATTTCTACGTCCTGG
GATTTCATTATGTTTTCGCAAGTTTTTATCTCCTTTTGGAATCCTGAAAC
TGTTGATGTTTCACATGAATTGACCCGTTCCAATAGATCAGGAGTGATCA
CGACACAGTTTTGACAAATGAAAGCTCTCGATTTGTATGTTAGACATAAT
TGGATTTGATAGACGGGGAGCTTTGAACAAATGTAGTGTACGATTCGATT
TCACTTCTTAAATTCAAGTGTGTCTTTGGATCTTCCTTCTTCACTTGTAA
CACATTCAGATGGGCTGCAAAGGTCGTGAATTGATGCTGAATTCGGTTGT
TTTCGTAGATTTTCCTGAATTTTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038993-exon-sc0001983-1575043694:33648..33818 | TCONS_00038993-exon-sc0001983-1575043694:33648..33818 | Clytia hemisphaerica | exon |
| TCONS_00038993-exon-sc0001983-1575043694:31542..32430 | TCONS_00038993-exon-sc0001983-1575043694:31542..32430 | Clytia hemisphaerica | exon |
| TCONS_00038993-exon-sc0001983-1510915933:33648..33818 | TCONS_00038993-exon-sc0001983-1510915933:33648..33818 | Clytia hemisphaerica | exon |
| TCONS_00038993-exon-sc0001983-1510915933:31542..32430 | TCONS_00038993-exon-sc0001983-1510915933:31542..32430 | Clytia hemisphaerica | exon |
| TCONS_00038993-exon-sc0001983-1491911889:33648..33818 | TCONS_00038993-exon-sc0001983-1491911889:33648..33818 | Clytia hemisphaerica | exon |
| TCONS_00038993-exon-sc0001983-1491911889:31542..32430 | TCONS_00038993-exon-sc0001983-1491911889:31542..32430 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001983 | supercontig | sc0001983:31542..33818 - |
Blast
The following BLAST results are available for this feature:
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