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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038992 ID=TCONS_00038992|Name=TCONS_00038992|organism=Clytia hemisphaerica|type=transcript|length=987bp
AGAAAATAgagtcaagaaaaaaaaatcatgtcGTTCTTTGATGAAGTTGA
GAAACATTTTGGAAATCGATGTCTGTATGCTGCGTTAAGTTTAGAGAAAG
AGGCTGACGAGAAGCAAATCAAGAGAGCTTACCACAAGTTTTCATTATTA
TGCCATCCTGATCGATCAAGTGAAGATAAAAAAGAGACCAATAAAGTAAG
ATTTCAAATCTTATCGAAAATCCATTCCGTTTTGAGCGATAAAGAAAAGA
GAGCAGTTTATGATGAAACCAGAGAACTTTCTGATGAAAGTGATATTTTT
ACACAAAATAAAGATTGGGAATCTTATTGGCGTGTTCTgtttaaaaaagt
ttccaaGAAAGATATTGAAGAATTTGAAGCAGAATATAAACACAGTGACA
GGGAAGCACAGGACTTGAAACAATGTTATGTTGAATTTGAAGGAGATATG
GAACAAATTATGGATAATATTATGTGCTCAACGTTTGAAGATGAGGAACG
ATTCTGTGAATTGATTAGAAAATGGATATCAGATGGGGAGGTTCCAGAAT
ATGAAGCATTTGTAAAAGAcagcaagaaaaacaaaaagaaacggAAGAAA
CAGGCGAAGAAGGAAGAAACGGAGGCAGACGAACTTGCAAAAGAACTTGG
TCTCAATAAAGATGCGAGTCTTGAGAATATGATTCTAGCAAGAAAGGCTG
ACCGCCAAAAAGACcaagaaaacttttttgcaaaactCGAAGAAAAATAT
GCCAAGAAACCCAAGACAAGtggaaagagaaagagaaagtgATAAAAATC
TACCTTAccgtttttttttgctctaattCTTTAGTTATACTATTTgtaat
tttgttctgtttttaaCCCTATAGTCTATAGATaatagaataaaaatatt
tatttctaattgaatttatataaaattagcaaatattttcaattaaattc
ttgcagttttaaaattcatcaaCCAACATCAACCATT Run BLAST on NCBI protein sequence of TCONS_00038992-protein >TCONS_00038992-protein ID=TCONS_00038992-protein|Name=TCONS_00038992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MSFFDEVEKHFGNRCLYAALSLEKEADEKQIKRAYHKFSLLCHPDRSSED
KKETNKVRFQILSKIHSVLSDKEKRAVYDETRELSDESDIFTQNKDWESY
WRVLFKKVSKKDIEEFEAEYKHSDREAQDLKQCYVEFEGDMEQIMDNIMC
STFEDEERFCELIRKWISDGEVPEYEAFVKDSKKNKKKRKKQAKKEETEA
DELAKELGLNKDASLENMILARKADRQKDQENFFAKLEEKYAKKPKTSGK
RKRK Run BLAST on NCBI transcript from alignment at sc0001983:16370..17956- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038992 ID=TCONS_00038992|Name=TCONS_00038992|organism=Clytia hemisphaerica|type=transcript|length=1587bp|location=Sequence derived from alignment at sc0001983:16370..17956- (Clytia hemisphaerica)
AGAAAATAGAGTCAAGAAAAAAAAATCATGTCGTTCTTTGATGAAGTTGA
GAAACATTTTGGAAATCGATGTCTGTATGCTGCGTTAAGTTTAGAGAAAG
AGGCTGACGAGAAGCAAATCAAGAGAGCTTACCACAAGTTTTCATTATTA
TGCCATCCTGATCGATCAAGTGAAGATAAAAAAGAGACCAATAAAGTAAG
ATTTCAAATCTTATCGAAAATCCATTCCGTTTTGAGCGATAAAGAAAAGA
GAGCAGTTTATGATGAAACCAGAGAACTTTCTGATGAAAGTGATATTTTT
ACACAAAATAAAGATTGGGAATCTTATTGGCGTGTTCTGTTTAAAAAAGT
TTCCAAGAAAGATATTGAAGAATTTGAAGCAGAATATAAACACAGTGACA
GGGAAGCACAGGACTTGAAACAATGTTATGTTGAATTTGAAGGAGATATG
GAACAAATTATGGATAATATTATGTGCTCAACGTTTGAAGATGAGGAACG
ATTCTGTGAATTGATTAGAAAATGGATATCAGATGGGGAGGTTCCAGAAT
ATGAAGCATTTGTAAAAGACAGCAAGAAAAACAAAAAGAAACGGAAGAAA
CAGGTTTGTTTCATCATTCATTTGTTAATTCCATTAGTCATTTCAGGTTG
TCTTTTGACATGCACCTTATAGTATTTTTCCTCTTCTATTGGAATCATCA
CCATCCCCTTAGTTGTAATTCATGTCAAATTAAATTAAGAGAAATATTTG
GGAACAAGAGTAGCGTAGCATGAGGAGTCCCAATTCTGAATTTTTACAGT
TTTAGAGTAGGAAATTTTGTTAACATTTTGTTAACACAGACGCCTCTCCC
TGAGATTCATTTAAATTCTTAGGGAATTCCACATATTGAAGTGAAAATTA
TATTCCTTTGTATGGTAGAGAGGCACTTTCCCAAAATATTTCTATTCATT
TTCAAAGGAAGATATTCTTTTGTATTTAGAAAAAATTCAGTTCCTGTATT
TTTTAAGGAAAATTGGTTTTTATTATGACAATTTTCTTTTTATAAGAAGC
TTGATTTAGCCTGGATATTCCTTAAACTAATCTTCACAATAGACAAAGCA
AGCTAAATTTATTTCCAACGAAAATTGTTACTGTCAAAATAAATTTCCTT
GAGATAGTATTAGTAAAATATTTAAGTTATTTTTTACTTATTTTCTTCGA
AAGGCGAAGAAGGAAGAAACGGAGGCAGACGAACTTGCAAAAGAACTTGG
TCTCAATAAAGATGCGAGTCTTGAGAATATGATTCTAGCAAGAAAGGCTG
ACCGCCAAAAAGACCAAGAAAACTTTTTTGCAAAACTCGAAGAAAAATAT
GCCAAGAAACCCAAGACAAGTGGAAAGAGAAAGAGAAAGTGATAAAAATC
TACCTTACCGTTTTTTTTTGCTCTAATTCTTTAGTTATACTATTTGTAAT
TTTGTTCTGTTTTTAACCCTATAGTCTATAGATAATAGAATAAAAATATT
TATTTCTAATTGAATTTATATAAAATTAGCAAATATTTTCAATTAAATTC
TTGCAGTTTTAAAATTCATCAACCAACATCAACCATT Coding sequence (CDS) from alignment at sc0001983:16370..17956- >TCONS_00038992 ID=TCONS_00038992|Name=TCONS_00038992|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0001983:16370..17956- (Clytia hemisphaerica)
GCGAAGAAGGAAGAAACGGAGGCAGACGAACTTGCAAAAGAACTTGGTCT
CAATAAAGATGCGAGTCTTGAGAATATGATTCTAGCAAGAAAGGCTGACC
GCCAAAAAGACCAAGAAAACTTTTTTGCAAAACTCGAAGAAAAATATGCC
AAGAAACCCAAGACAAGTGGAAAGAGAAAGAGAAAGTGAATGTCGTTCTT
TGATGAAGTTGAGAAACATTTTGGAAATCGATGTCTGTATGCTGCGTTAA
GTTTAGAGAAAGAGGCTGACGAGAAGCAAATCAAGAGAGCTTACCACAAG
TTTTCATTATTATGCCATCCTGATCGATCAAGTGAAGATAAAAAAGAGAC
CAATAAAGTAAGATTTCAAATCTTATCGAAAATCCATTCCGTTTTGAGCG
ATAAAGAAAAGAGAGCAGTTTATGATGAAACCAGAGAACTTTCTGATGAA
AGTGATATTTTTACACAAAATAAAGATTGGGAATCTTATTGGCGTGTTCT
GTTTAAAAAAGTTTCCAAGAAAGATATTGAAGAATTTGAAGCAGAATATA
AACACAGTGACAGGGAAGCACAGGACTTGAAACAATGTTATGTTGAATTT
GAAGGAGATATGGAACAAATTATGGATAATATTATGTGCTCAACGTTTGA
AGATGAGGAACGATTCTGTGAATTGATTAGAAAATGGATATCAGATGGGG
AGGTTCCAGAATATGAAGCATTTGTAAAAGACAGCAAGAAAAACAAAAAG
AAACGGAAGAAACAGGCGAAGAAGGAAGAAACGGAGGCAGACGAACTTGC
AAAAGAACTTGGTCTCAATAAAGATGCGAGTCTTGAGAATATGATTCTAG
CAAGAAAGGCTGACCGCCAAAAAGACCAAGAAAACTTTTTTGCAAAACTC
GAAGAAAAATATGCCAAGAAACCCAAGACAAGTGGAAAGAGAAAGAGAAA
GTGAATGTCGTTCTTTGATGAAGTTGAGAAACATTTTGGAAATCGATGTC
TGTATGCTGCGTTAAGTTTAGAGAAAGAGGCTGACGAGAAGCAAATCAAG
AGAGCTTACCACAAGTTTTCATTATTATGCCATCCTGATCGATCAAGTGA
AGATAAAAAAGAGACCAATAAAGTAAGATTTCAAATCTTATCGAAAATCC
ATTCCGTTTTGAGCGATAAAGAAAAGAGAGCAGTTTATGATGAAACCAGA
GAACTTTCTGATGAAAGTGATATTTTTACACAAAATAAAGATTGGGAATC
TTATTGGCGTGTTCTGTTTAAAAAAGTTTCCAAGAAAGATATTGAAGAAT
TTGAAGCAGAATATAAACACAGTGACAGGGAAGCACAGGACTTGAAACAA
TGTTATGTTGAATTTGAAGGAGATATGGAACAAATTATGGATAATATTAT
GTGCTCAACGTTTGAAGATGAGGAACGATTCTGTGAATTGATTAGAAAAT
GGATATCAGATGGGGAGGTTCCAGAATATGAAGCATTTGTAAAAGACAGC
AAGAAAAACAAAAAGAAACGGAAGAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038992-exon-sc0001983-1575043694:17354..17956 | TCONS_00038992-exon-sc0001983-1575043694:17354..17956 | Clytia hemisphaerica | exon |
| TCONS_00038992-exon-sc0001983-1575043694:16370..16753 | TCONS_00038992-exon-sc0001983-1575043694:16370..16753 | Clytia hemisphaerica | exon |
| TCONS_00038992-exon-sc0001983-1510915933:17354..17956 | TCONS_00038992-exon-sc0001983-1510915933:17354..17956 | Clytia hemisphaerica | exon |
| TCONS_00038992-exon-sc0001983-1510915933:16370..16753 | TCONS_00038992-exon-sc0001983-1510915933:16370..16753 | Clytia hemisphaerica | exon |
| TCONS_00038992-exon-sc0001983-1491911889:17354..17956 | TCONS_00038992-exon-sc0001983-1491911889:17354..17956 | Clytia hemisphaerica | exon |
| TCONS_00038992-exon-sc0001983-1491911889:16370..16753 | TCONS_00038992-exon-sc0001983-1491911889:16370..16753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001983 | supercontig | sc0001983:16370..17956 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00038992 vs. Swiss-Prot (Human)
Match: DNJC9 (DnaJ homolog subfamily C member 9 OS=Homo sapiens GN=DNAJC9 PE=1 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 1.076e-69 Identity = 115/242 (47.52%), Postives = 168/242 (69.42%), Query Frame = 1
Query: 28 MSFFDEVEKHFGNRCLYAALSLEKEADEKQIKRAYHKFSLLCHPDRSSEDKKETNKVRFQILSKIHSVLSDKEKRAVYDETRELSDESDIFTQNKDWESYWRVLFKKVSKKDIEEFEAEYKHSDREAQDLKQCYVEFEGDMEQIMDNIMCSTFEDEERFCELIRKWISDGEVPEYEAFVXXXXXXXXXXXXXXXXEETEADELAKELGLNKDA-SLENMILARKADRQKDQENFFAKLEEKY 750
M D E+ FG LY L + +EA + +++R YHK SL HPDR E KE RFQIL K++SVLSD+E+RAVYDE + ++S + TQ++DWE+YWR+LFKK+S +DI+ FE YK S+ E D+KQ Y++F+GDM+QIM++++C + +E R +I++ I GEVP Y AFVK+SK+ RK++A++E EA+ KELGL++ SL+ I +R+ DRQK+ +NF A++E KY
Sbjct: 1 MGLLDLCEEVFGTADLYRVLGVRREASDGEVRRGYHKVSLQVHPDRVGEGDKEDATRRFQILGKVYSVLSDREQRAVYDEQGTVDEDSPVLTQDRDWEAYWRLLFKKISLEDIQAFEKTYKGSEEELADIKQAYLDFKGDMDQIMESVLCVQYTEEPRIRNIIQQAIDAGEVPSYNAFVKESKQKMNARKRRAQEEAKEAEMSRKELGLDEGVDSLKAAIQSRQKDRQKEMDNFLAQMEAKY 242
The following BLAST results are available for this feature:
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