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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038987 ID=TCONS_00038987|Name=TCONS_00038987|organism=Clytia hemisphaerica|type=transcript|length=1001bp
CAAAATTCCAAAAACAATTGCAGATAGTTCATCACcgaaataaaaatctt
ttgaaacatTAACAACACGCCAATATTCAAAAGAAGTGCCCTGATTCCTT
CGTTGAAACTTTAAACATTTCTCAAAATCCTTTGTATGGAGAAGAAAAAA
GGTTGCAGTTTCCCATGCAATTTTCAAATCTTCAACCAGAAAATCCCCCA
AATCTTCTTGGTACctgttgttttttctgttcaCGAAATCCAGACGATTA
CGACCCTTATTGAATTCCTTTCTCATGAATAAATATTTATCCGTcttgaa
catttttttattcccCATCATCGCGGAGATCGCTTTGTACCAGTTACCAT
AAGAAGGGTACAAAAGTGAAGATTTATTTCCTTCGTGAAAGTATTCTGCT
CCCCAAACCAAACGATCGATCGTCGTCATATTTTCCACAACTTCATTCGC
AGCTTGGTTTTGCTTTTGAATGAcgcttttcaaattttcaatttctccgT
TCAAATGTTGGACAGTTGCTTCTTTCTCTGTCATCTCTTTCTCCATCTCA
TTCAATTTTGTCTCCGTTtgtaagattttaattttgtgttcgttttccaa
atctttcattttcattttccattcattttctTTTACTACTATTTCCTTTT
CGTGCTCGTTGGCTACTAATTGTTTCTCCTTTTCAAACAAGTTATTTTGC
AGCTCGTCGTTCTGTTTTTGGAGTTGTTGATCGGCTTGAACTTGACTTGA
TTGAGATTCACAAGAATTCTTTAATTTGAACATCTCAAATTGATGAGATa
aagtttgattttctttttctagctgcatgattttcaacgttttttcgTTT
TCAGATTCCAGTTGTTGAATCTTAAATTCCATTTTAAGTTTCTCAATctc
tttttgatgttcttctttgAGCTTTGCAATTTGCTGATCGTCAGCAACTT
GTGGCACATTCCTCCCACTACCACTGTGAGCCAAATTCCTCTCGTCAGAA
T Run BLAST on NCBI protein sequence of TCONS_00038987-protein >TCONS_00038987-protein ID=TCONS_00038987-protein|Name=TCONS_00038987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
SDERNLAHSGSGRNVPQVADDQQIAKLKEEHQKEIEKLKMEFKIQQLESE
NEKTLKIMQLEKENQTLSHQFEMFKLKNSCESQSSQVQADQQLQKQNDEL
QNNLFEKEKQLVANEHEKEIVVKENEWKMKMKDLENEHKIKILQTETKLN
EMEKEMTEKEATVQHLNGEIENLKSVIQKQNQAANEVVENMTTIDRLVWG
AEYFHEGNKSSLLYPSYGNWYKAISAMMGNKKMFKTDKYLFMRKEFNKGR
NRLDFVNRKNNRYQEDLGDFLVEDLKIAWETATFFLLHTKDFEKCLKFQR
RNQGTSFEYWRVVNVSKDFYFGDELSAIVFGIL Run BLAST on NCBI transcript from alignment at sc0001982:17011..18011 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038987 ID=TCONS_00038987|Name=TCONS_00038987|organism=Clytia hemisphaerica|type=transcript|length=1001bp|location=Sequence derived from alignment at sc0001982:17011..18011 (Clytia hemisphaerica)
ATTCTGACGAGAGGAATTTGGCTCACAGTGGTAGTGGGAGGAATGTGCCA
CAAGTTGCTGACGATCAGCAAATTGCAAAGCTcaaagaagaacatcaaaa
agagATTGAGAAACTTAAAATGGAATTTAAGATTCAACAACTGGAATCTG
AAAAcgaaaaaacgttgaaaatcatgcagctagaaaaagaaaatcaaact
ttATCTCATCAATTTGAGATGTTCAAATTAAAGAATTCTTGTGAATCTCA
ATCAAGTCAAGTTCAAGCCGATCAACAACTCCAAAAACAGAACGACGAGC
TGCAAAATAACTTGTTTGAAAAGGAGAAACAATTAGTAGCCAACGAGCAC
GAAAAGGAAATAGTAGTAAAagaaaatgaatggaaaatgaaaatgaaaga
tttggaaaacgaacacaaaattaaaatcttacaAACGGAGACAAAATTGA
ATGAGATGGAGAAAGAGATGACAGAGAAAGAAGCAACTGTCCAACATTTG
AAcggagaaattgaaaatttgaaaagcgTCATTCAAAAGCAAAACCAAGC
TGCGAATGAAGTTGTGGAAAATATGACGACGATCGATCGTTTGGTTTGGG
GAGCAGAATACTTTCACGAAGGAAATAAATCTTCACTTTTGTACCCTTCT
TATGGTAACTGGTACAAAGCGATCTCCGCGATGATGgggaataaaaaaat
gttcaagACGGATAAATATTTATTCATGAGAAAGGAATTCAATAAGGGTC
GTAATCGTCTGGATTTCGtgaacagaaaaaacaacagGTACCAAGAAGAT
TTGGGGGATTTTCTGGTTGAAGATTTGAAAATTGCATGGGAAACTGCAAC
CTTTTTTCTTCTCCATACAAAGGATTTTGAGAAATGTTTAAAGTTTCAAC
GAAGGAATCAGGGCACTTCTTTTGAATATTGGCGTGTTGTTAatgtttca
aaagatttttatttcgGTGATGAACTATCTGCAATTGTTTTTGGAATTTT
G Coding sequence (CDS) from alignment at sc0001982:17011..18011 >TCONS_00038987 ID=TCONS_00038987|Name=TCONS_00038987|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at sc0001982:17011..18011 (Clytia hemisphaerica)
TCTGACGAGAGGAATTTGGCTCACAGTGGTAGTGGGAGGAATGTGCCACA
AGTTGCTGACGATCAGCAAATTGCAAAGCTcaaagaagaacatcaaaaag
agATTGAGAAACTTAAAATGGAATTTAAGATTCAACAACTGGAATCTGAA
AAcgaaaaaacgttgaaaatcatgcagctagaaaaagaaaatcaaacttt
ATCTCATCAATTTGAGATGTTCAAATTAAAGAATTCTTGTGAATCTCAAT
CAAGTCAAGTTCAAGCCGATCAACAACTCCAAAAACAGAACGACGAGCTG
CAAAATAACTTGTTTGAAAAGGAGAAACAATTAGTAGCCAACGAGCACGA
AAAGGAAATAGTAGTAAAagaaaatgaatggaaaatgaaaatgaaagatt
tggaaaacgaacacaaaattaaaatcttacaAACGGAGACAAAATTGAAT
GAGATGGAGAAAGAGATGACAGAGAAAGAAGCAACTGTCCAACATTTGAA
cggagaaattgaaaatttgaaaagcgTCATTCAAAAGCAAAACCAAGCTG
CGAATGAAGTTGTGGAAAATATGACGACGATCGATCGTTTGGTTTGGGGA
GCAGAATACTTTCACGAAGGAAATAAATCTTCACTTTTGTACCCTTCTTA
TGGTAACTGGTACAAAGCGATCTCCGCGATGATGgggaataaaaaaatgt
tcaagACGGATAAATATTTATTCATGAGAAAGGAATTCAATAAGGGTCGT
AATCGTCTGGATTTCGtgaacagaaaaaacaacagGTACCAAGAAGATTT
GGGGGATTTTCTGGTTGAAGATTTGAAAATTGCATGGGAAACTGCAACCT
TTTTTCTTCTCCATACAAAGGATTTTGAGAAATGTTTAAAGTTTCAACGA
AGGAATCAGGGCACTTCTTTTGAATATTGGCGTGTTGTTAatgtttcaaa
agatttttatttcgGTGATGAACTATCTGCAATTGTTTTTGGAATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038987-exon-sc0001982-1491911889:17011..18011 | TCONS_00038987-exon-sc0001982-1491911889:17011..18011 | Clytia hemisphaerica | exon |
| TCONS_00038987-exon-sc0001982-1510915933:17011..18011 | TCONS_00038987-exon-sc0001982-1510915933:17011..18011 | Clytia hemisphaerica | exon |
| TCONS_00038987-exon-sc0001982-1575043694:17011..18011 | TCONS_00038987-exon-sc0001982-1575043694:17011..18011 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001982 | supercontig | sc0001982:17011..18011 . |
Blast
The following BLAST results are available for this feature:
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